BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485334
Length=1129
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49720.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1827 0.0
AT5G65810.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 765 0.0
> AT3G49720.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast thylakoid membrane, Golgi apparatus,
plasma membrane, membrane; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G65810.1);
Has 64 Blast hits to 64 proteins in 11 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:18440003-18442198
REVERSE LENGTH=1139
Length=1139
Score = 1827 bits (989), Expect = 0.0
Identities = 1088/1135 (96%), Gaps = 9/1135 (1%)
Strand=Plus/Plus
Query 1 ATATTAACACTTCGAAGCTTCTTCTTCATTTTAAGTAAATTCAAGTG-GA-G-GTGTTTA 57
||||||||||||||||||||||||||| ||| |||||||||||||| || | |||||||
Sbjct 5 ATATTAACACTTCGAAGCTTCTTCTTC-CTTT-AGTAAATTCAAGTGTGAGGTGTGTTTA 62
Query 58 TTCATAAAGTGCTCATTTTCTCGGATCTCAGATCTTAGATCCAAACCCTCCTCGTTTCAT 117
|| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 63 TTGATAAAGTGCTCATTTTCTCGGATCTCAGATCTTAGATCCAAACCCTCATTATTTCAT 122
Query 118 TGATCCAAGATCTAATAGCTTGAGCTTG-TGGGGATTTTAGTTATGGCGAGACGGCAAGT 176
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 123 TGATCCAAGATCTAATAGCTTGAGCTTGCT-GGGATTTTAGTTATGGCGAGACGGCAAGT 181
Query 177 AGGTTCAACAAGACGTGTAGGAGATGGTGGAAGCTTCCCGTTTGCAGGAGCTTTGCATTC 236
|||||||||||||||||| || ||||||||||||||||| |||||||||||||| || ||
Sbjct 182 AGGTTCAACAAGACGTGTTGGCGATGGTGGAAGCTTCCCTTTTGCAGGAGCTTTACACTC 241
Query 237 AAAGTCTCGATCTTCTCCACTACTCTCTATTTGCCTTGTCCTTTTGGGGGCTTGCCTTCT 296
|||||||||||||||||||||||| |||||||||||||| ||| |||||||||| |||||
Sbjct 242 AAAGTCTCGATCTTCTCCACTACTATCTATTTGCCTTGTTCTTGTGGGGGCTTGTCTTCT 301
Query 297 TATTGGTTATGCTTACAGTGGTCCAGGTATCTTTAAAAGTATCAAAGAAGTCAGCAAAGT 356
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 302 CATTGGTTATGCTTACAGTGGTCCAGGTATATTTAAAAGTATCAAAGAAGTTAGCAAAGT 361
Query 357 TACAGGTGACTATTCTTGCACAGCAGAAGTCCAAAGAGCCATTCCTGTTCTTAAGAAGGC 416
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 362 TACAGGTGACTATTCTTGCACAGCAGAAGTCCAAAGAGCCATTCCTGTACTTAAGAAGGC 421
Query 417 TTATGGAGATGGCATGCGCAAAGTCTTGCATGTGGGCCCTGACACATGCTCAGTGGTTTC 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TTATGGAGATGGCATGCGCAAAGTCTTGCATGTGGGCCCTGACACATGCTCAGTGGTTTC 481
Query 477 CAGTCTACTGAAAGAAGAAGAGACTGAAGCATGGGGTGTTGAACCATATGACATCGAGGA 536
||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 482 CAGTCTATTGAAAGAAGAAGAGACTGAAGCATGGGGTGTTGAACCATATGATATTGAGGA 541
Query 537 TGCAGATTCTCACTGCAAGAGTTTTGTGAGCAAAGGCCTTGTACGTGTGGCTGATATCAA 596
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 542 TGCAGATTCTCACTGCAAGAGTTTTGTGAGCAAAGGTCTTGTACGTGTTGCTGATATCAA 601
Query 597 GTTCCCTCTGCCCTACCGGGCAAAATCTTTCTCTCTTGTGATTGTGTCAGATGCTCTGGA 656
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 602 GTTTCCTCTGCCCTACCGGGCAAAATCCTTCTCTCTTGTGATTGTGTCAGATGCTCTGGA 661
Query 657 TTATCTCTCACCCAAGTACCTGAACAAGACTGTGCCTGAACTCGCAAGGGTGGCTTCAGA 716
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 662 TTATCTCTCACCCAAGTACCTGAACAAGACCGTTCCTGAACTCGCAAGGGTGGCTTCAGA 721
Query 717 CGGTGTTGTTCTTTTTGCAGGTCTCCCTGGTCAGCAGAGAGCTAAAGTTGCTGAACTGTC 776
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 722 CGGTGTGGTTCTTTTTGCAGGTCTCCCTGGTCAGCAGAGAGCTAAAGTTGCTGAACTCTC 781
Query 777 TAAATTCGGCCGACCCGCTAAAATGCGTAGTGCATCGTGGTGGAACCGCTTTTTCGTCCA 836
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 782 TAAATTCGGCCGACCCGCTAAAATGCGTAGCGCATCGTGGTGGAACCGCTTTTTCGTCCA 841
Query 837 GACAAACTTAGAAGAAAACGAAGCACCAAGCAAGAAGTTCGATCAGGCTGTTTCCAAAGG 896
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 842 GACAAACTTAGAAGAAAACGATGCACCAAGCAAGAAGTTCGAACAGGCTGTTTCCAAAGG 901
Query 897 ATTATACAAACCAGCCTGCCAAGTCTTCCACCTCAAGCCATTACATTAACCAGCCACCAC 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 ATTATACAAACCAGCCTGCCAAGTCTTCCACCTCAAGCCATTACATTAACCAGCCACCAC 961
Query 957 CAA-GCCTATTGGGTCCACACCAAAGCATATTTACACGTAGAGCCGCACGaaaaaaaaaa 1015
||| ||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 962 CAAAGCCTACTGGTTCCACACCAAAGCATATTTACACGTAGAGCCGCACGCGAAAAAAAA 1021
Query 1016 aaaTAGCGTAATCGATATT-CTCCTTGTATTTTGTAACAGGTCAGTTTTTATCCTTCAAT 1074
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 AAATAGCGTAATCGATATTTCTCCTTGTATTTTGTAACAGGTCAGTTTTTATCCTTCAAT 1081
Query 1075 GTTGTATCGGTCAACACAATTTTTCCTATTCAATTAAATCATAATTATTATCACC 1129
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 GTTGTATCCGCCAACACAATTTTTCCTATTCAATTAAATCATAATTATTATCACC 1136
> AT5G65810.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G49720.2);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:26337665-26339746 REVERSE LENGTH=1124
Length=1124
Score = 765 bits (414), Expect = 0.0
Identities = 656/771 (85%), Gaps = 24/771 (3%)
Strand=Plus/Plus
Query 186 AAGACGTGTAGGAGATGGTGGAAGCTTCCCGTTTGCAGGAGCTTTGCATTCAAAGTCTCG 245
||| |||||||| ||| ||||||||||||| |||| ||||||| |||||||||| || ||
Sbjct 197 AAGGCGTGTAGGGGATAGTGGAAGCTTCCCATTTGTAGGAGCTCTGCATTCAAAATCACG 256
Query 246 ATCTTCTCCACTACTCTCTA-TTTGCCTTGTCCTTTTGGGGGCTTGCCTTCTTATTGGTT 304
|| ||||| || | || | |||||||||| || |||| || |||||||| |||||||
Sbjct 257 TTCGTCTCCTCTGTTATC-AGTTTGCCTTGTTCTCGTGGGAGCATGCCTTCTCATTGGTT 315
Query 305 ATGCTTACAGTGGTCCAGGTATCTTTAAAAGTATCAAAGAAGTCAGCAAAG-TTACAGGT 363
|||||||||||||||||||||| || |||||||||| |||||||||| ||| ||||||||
Sbjct 316 ATGCTTACAGTGGTCCAGGTATGTTCAAAAGTATCAGAGAAGTCAGC-AAGATTACAGGT 374
Query 364 GACTATTCTTGCACAGCAGAAGTCCAAAGAGCCATTCCTGTTCTTAAGAAG-GCTTATGG 422
||||||||||||||||||||||| ||||||||||||||| ||||||||| | || |||||
Sbjct 375 GACTATTCTTGCACAGCAGAAGTTCAAAGAGCCATTCCTATTCTTAAGA-GTGCGTATGG 433
Query 423 AGATGGCATGCGCAAAGTCTTGCATGTGGGCCCTGACACATGCTCAGTGGTTTCCAGTCT 482
|||| |||||||||||||| |||| ||||| ||||| |||||||||||||| || |||||
Sbjct 434 AGATAGCATGCGCAAAGTCCTGCACGTGGGTCCTGAAACATGCTCAGTGGTCTCGAGTCT 493
Query 483 ACTGAAAGAAGAAGAGACTGAAGCATGGGGTGTTGAACCATATGACATCGAGGATGCAGA 542
|||| ||||||||||| |||||||||||||||||||||||||| | |||||||||||
Sbjct 494 GTTGAATGAAGAAGAGACAGAAGCATGGGGTGTTGAACCATATGATGTGGAGGATGCAGA 553
Query 543 TTCTCACTGCAAGAGT-TTTGTG-AGCAAAGGCCTTGTACGTGTGGCTGATATCAAGTTC 600
||| ||||||| ||| ||| || | ||| |||||||||||||||||||| ||||| |||
Sbjct 554 CTCTAACTGCAAAAGTCTTT-TGCA-CAAGGGCCTTGTACGTGTGGCTGACATCAAATTC 611
Query 601 CCTCTGCCCTACCGGGCAAAATC-TTTCTCTCTTGTGATTGTGTCAGATGCTCTGGATTA 659
||||| || |||||| |||| || ||| ||||||||||| || ||||| ||| |||||||
Sbjct 612 CCTCTTCCTTACCGGTCAAAGTCGTTT-TCTCTTGTGATCGTCTCAGACGCTTTGGATTA 670
Query 660 TCTCTCACCCAAGTACCTGAACAAGACTGTGCCTGAACTCGCAAGGGTGGCTTCAGACGG 719
|||||||||| |||||||||||| |||||||||||||| || | || |||||||| ||
Sbjct 671 CCTCTCACCCAGGTACCTGAACAAAACTGTGCCTGAACTTGCTCGCGTCGCTTCAGATGG 730
Query 720 TGTTGTTCTTTTTGCAGGTCTCCCTGGTCAGCAGAGAG-CTAAAGTTGCTGAACTGTCTA 778
||| |||||||| |||||| ||||||||| || | || |||||| || ||| |||| |
Sbjct 731 TGTCGTTCTTTTAGCAGGTAACCCTGGTCAACAAA-AGGCTAAAGGTGGGGAATTGTCGA 789
Query 779 AATTCGGCCGACCCGCTAAAATGCGTAG-TGCATCGTGGTGGAACCGCTTT-TTCGTC-C 835
|||| || || || |||||||||||||| | | |||||||||| ||| ||| ||| || |
Sbjct 790 AATTTGGACGGCCTGCTAAAATGCGTAGCT-CGTCGTGGTGGATCCG-TTTCTTC-TCAC 846
Query 836 AGACAAACTTAGAAGAAAACGAAGCACCAAGCAAGAAGTTCGATCAGGCTGTTTCCAA-A 894
|||| |||||||| |||||||||||| |||||||||| ||||| || || | |||||| |
Sbjct 847 AGACGAACTTAGAGGAAAACGAAGCAGCAAGCAAGAAATTCGAACAAGCAGCTTCCAAGA 906
Query 895 GGATT-ATACAAACCAGCCTGCCAAGTCTTCCACCTCAAGCCATTACATTA 944
| || |||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 907 G--TTCATACAAACCAGCTTGTCAAGTTTTCCACCTCAAGCCATTACATTA 955
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55371201135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5