BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485336
Length=2196
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49740.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3062 0.0
> AT3G49740.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:18447788-18450094 FORWARD LENGTH=2307
Length=2307
Score = 3062 bits (1658), Expect = 0.0
Identities = 2020/2195 (92%), Gaps = 24/2195 (1%)
Strand=Plus/Plus
Query 14 TATCAGCCATAGGC-GAAAGCTCGACTACGTTGCTCAATTTAAACCGGAGACTAACGGCT 72
||||||||||| || |||| ||| || ||||||||||||||||||||||||||||||| |
Sbjct 32 TATCAGCCATA-GCAGAAAACTCTACCACGTTGCTCAATTTAAACCGGAGACTAACGGGT 90
Query 73 CTCACTCGTTCCGGCGAGAACAGAAACGCTCTCAAGCTCTTCGCCGATGTTCACCGTTGT 132
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 91 CTCACTCGTTCCGGCGAGAACAGAAACGCTCTCAAGCTCTTCGCCGATGTTCACCGTTGC 150
Query 133 ATAACTCTGAGACCAGACCAGTACAGTGTCTCGTTAGCTATTACTGCAGCTGGGCACCTC 192
| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 151 ACAACTCTGAGACCAGACCAGTACAGTGTCTCGTTAGCTATTACTACAGCTAGGCACCTC 210
Query 193 CGTGATACCATCTTCGGTGGTCAGGTTCATTGCTATGCGATTCGCTCTGGTTTATTGTGT 252
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 CGTGATACTATCTTTGGTGGTCAGGTTCATTGCTATGCGATTCGCTCTGGTTTATTGTGT 270
Query 253 CACTCTCACGTCTCCAATACGCTTCTCTCGCTATACGCGAGATTAGGGAACTTAGCTTCG 312
||||||||||| |||||||||||||| |||||||| | ||||||||||||||||||||||
Sbjct 271 CACTCTCACGTTTCCAATACGCTTCTTTCGCTATATGAGAGATTAGGGAACTTAGCTTCG 330
Query 313 TTGAAGAGGAAGTTCGAAGAGATT-ATTGAACCTGATGTTTATTCATGGACGACGCTTTT 371
||||||| ||||||||| |||||| | ||||||||||||||||||||||||||||||| |
Sbjct 331 TTGAAGAAGAAGTTCGACGAGATTGA-TGAACCTGATGTTTATTCATGGACGACGCTTCT 389
Query 372 GAGTGCAAGTTTTAAGCTTGGTGATATAGAGTATGCCTTTGAGGTGTTTGATAAAATGCC 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 GAGTGCAAGTTTTAAGCTTGGTGATATAGAGTATGCCTTTGAGGTGTTTGATAAAATGCC 449
Query 432 TGAGAGGGATGATGTTGCGGTTTGGAATGCTATGATCACTGGTTGCAAAGAGAGTGGGTA 491
|||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 450 TGAGAGAGATGATGTTGCGATTTGGAATGCTATGATTACTGGTTGCAAAGAGAGTGGGTA 509
Query 492 TCAAGGAACGAGTATTGAGTTGTTTCGAGAAATGCACAAGCTTGGTGTTCGACATGATAA 551
||| | ||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 510 TCACGAAACGAGTGTTGAGTTGTTTCGAGAAATGCATAAGCTTGGTGTTCGACATGATAA 569
Query 552 GTTTGGCTTTGCTACTGTTTTGAGTATGTGTTACTATGGTTCTTTGGATTTTGGTAAGCA 611
|||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 570 GTTTGGGTTTGCTACTATTTTGAGTATGTGTGACTATGGTTCTTTGGATTTTGGTAAGCA 629
Query 612 GGTGCATTCGCTAGTTATAAAAGCTGGATTTTTTGTTGCATCATCTGTTGTGAATGCACT 671
|||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 630 GGTGCATTCGCTGGTTATAAAAGCTGGATTTTTTATTGCTTCATCTGTTGTGAATGCACT 689
Query 672 AATTACAATGTATTTCAATTGCCAAGTGGTTGTTGATGCTCGTCTGGTGTTTGAAGAAGC 731
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 690 AATTACAATGTATTTCAATTGCCAAGTGGTTGTTGATGCTTGTCTGGTGTTTGAAGAAAC 749
Query 732 TGATGTTGCTGTTCGTGATCAGGTCACTTTTAATGTGGTTATTGATGGTTTGGCTGGTTT 791
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 750 TGATGTTGCTGTTCGTGATCAGGTTACTTTTAATGTGGTTATTGATGGTTTGGCTGGTTT 809
Query 792 CAAAAGAGAGGAGTCTTTGTTGGTGTTTAGACAAATGGTCGAAGCTGGTCTTAGACCAAC 851
||||||||| ||||||||||||||||||||| ||||| | |||||| |||||||||||||
Sbjct 810 CAAAAGAGACGAGTCTTTGTTGGTGTTTAGAAAAATGCTAGAAGCTAGTCTTAGACCAAC 869
Query 852 TGATCTGACCTTTGTTAGCGTTATGAGTTCATGTTCATGTGAGACTATGGGACACCAAGT 911
||| ||||||||||||| |||||| ||||||||||||||| | ||||||||||||||||
Sbjct 870 CGATTTGACCTTTGTTAGTGTTATGGGTTCATGTTCATGTGCGGCTATGGGACACCAAGT 929
Query 912 ACATGGACTAGCCATCAAGACAGGGTATGAAGA-GTATACTTTGGTCAGCAATTCCACTA 970
|||||||||||||||||||||||| ||||| || |||||||||||| |||||| ||||||
Sbjct 930 ACATGGACTAGCCATCAAGACAGGTTATGA-GAAGTATACTTTGGTTAGCAATGCCACTA 988
Query 971 TGACAATGTATTCTTCTTTTGA-GAATTTTGGTGCGGCTCTTAAGGTTTTCGAGTCATTG 1029
|||||||||||||||||||||| || |||||||||||||| ||||||||| |||||||||
Sbjct 989 TGACAATGTATTCTTCTTTTGAAGA-TTTTGGTGCGGCTCATAAGGTTTTTGAGTCATTG 1047
Query 1030 GAAGAGAAAGATTTGATTACTTGGAATACAATGATTTCTGGTTATAACCAAGCGAACTTG 1089
||||||||||| ||| |||||||||| |||||||| || |||||||||||||||| |||
Sbjct 1048 GAAGAGAAAGACTTGGTTACTTGGAACACAATGATCTCAAGTTATAACCAAGCGAAATTG 1107
Query 1090 GGGCA-GTCTGCGTTGTTGTTGTACAAGCGAATGCATGGAATAGGAGTTAAACCGGATGA 1148
|| || ||||||| ||| | | |||||| ||||||| |||||||||||||||||||||
Sbjct 1108 GG-CAAGTCTGCGATGTCGGTATACAAGAGAATGCACATAATAGGAGTTAAACCGGATGA 1166
Query 1149 GTTTACTTTCGGAAGTCTTTTAGCAAGCTCTCTGGATTTGGATGCCCTGGAGATGGTTCA 1208
||||||||| |||||||||||||||| |||||||||||| |||| |||||||||||||||
Sbjct 1167 GTTTACTTTTGGAAGTCTTTTAGCAACCTCTCTGGATTTAGATGTCCTGGAGATGGTTCA 1226
Query 1209 AGCGTGTGTAATCAAATTCGGGCTTAGTTCAAAGATCGAAATTTCGAATGCACTGATATC 1268
||||||| ||||||| || ||||||||||||||||| |||||||| ||||| |||||||
Sbjct 1227 AGCGTGTATAATCAAGTTTGGGCTTAGTTCAAAGATTGAAATTTCCAATGCGTTGATATC 1286
Query 1269 TGCCTATTCGAAGCACGGAAAGATA-ACAAAGGCAGACCTAATATTCGAAAGTTCGCCGA 1327
|||||| |||||| | ||| ||||| | |||| | |||||| |||| ||||| || | ||
Sbjct 1287 TGCCTACTCGAAGAATGGACAGATAGAAAAAG-CTGACCTATTATTTGAAAGATCTCTGA 1345
Query 1328 AGAAGAATCTAATCTCATGGAACGCGATAATCTCGGGGTTTTACCATAATGGGTTTTCCT 1387
||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||| |||
Sbjct 1346 GGAAGAATCTTATCTCATGGAATGCGATAATCTCAGGGTTTTACCATAACGGGTTT-CCT 1404
Query 1388 TT-GAAGGTTTGGAAAGATTCTCTTGCTTGCTAGAAG-CAGAGGTCCTAATCATACCTGA 1445
|| |||||||||||||| ||||| ||||||||||| | ||||||||| |||| |||||||
Sbjct 1405 TTTGAAGGTTTGGAAAGGTTCTCGTGCTTGCTAGA-GTCAGAGGTCCGAATCCTACCTGA 1463
Query 1446 TGCTTATACTCTTAGCATTCTTTTGAGCATTTGCGTA-GACATTTCGTCTTTGATGCTCG 1504
|||||||||||| || | |||||||||||||||||| | || ||| |||||||||||||
Sbjct 1464 TGCTTATACTCTCAGTACCCTTTTGAGCATTTGCGTAAG-CACTTCATCTTTGATGCTCG 1522
Query 1505 GAGAGC-AGACTCACGCTTACGCCCTCAGACATGGGCAATTCAAGGAGACGTTGATTGGT 1563
|| ||| | ||||||||||||| ||| ||||| || |||||||||||||| ||||| |||
Sbjct 1523 GA-AGCCAAACTCACGCTTACGTCCTTAGACACGGCCAATTCAAGGAGACATTGATAGGT 1581
Query 1564 AATGCCTTTATCAACATGTACTCTCAATGCGGGACTCTACAAAAATCTCTTGCTGTATTC 1623
|||||| | || |||||||||||||||||||||||| ||||||| ||||||| || |||
Sbjct 1582 AATGCCCTCATAAACATGTACTCTCAATGCGGGACTATACAAAACTCTCTTGAAGTGTTC 1641
Query 1624 AATCAGATATCTGAAAAGGACACTGTGTCATGGAATTCTCTGATCTCTGCATACGCGAGA 1683
|||||||| |||||||| || ||||||||||||||||||||||||||||||| |||||
Sbjct 1642 AATCAGATGTCTGAAAAAGATGTTGTGTCATGGAATTCTCTGATCTCTGCATACTCGAGA 1701
Query 1684 CACGG-GAAAGGAGAGAGTGCGGTTCTTACCTACAAGACGATGCAAGATGAAGGCAAGGT 1742
||||| ||| ||||||| |||||| |||||||||||| |||||||||||||| |||||
Sbjct 1702 CACGGTGAA-GGAGAGAACGCGGTTAATACCTACAAGACAATGCAAGATGAAGGAAAGGT 1760
Query 1743 GGAT-CCCGATGCAGCCACATTATCAGCGGTTCTCTCTGCTTGCGGCCACGCCGGTTTAG 1801
|| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1761 C-ATTCCCGATGCAGCCACATTCTCAGCGGTTCTCTCTGCTTGCAGCCACGCCGGTTTAG 1819
Query 1802 TCAAAGAGGGACTCGAGATTTTCAACTCAATGGTGGAATTTCACGGTCTGATACCAAATG 1861
| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1820 TGGAAGAGGGACTCGAGATTTTCAACTCAATGGTGGAATTTCACGGTGTGATACGAAATG 1879
Query 1862 TGGATCATTTTTCATGCTTAGTTGACCTTCTTGGTCGAGCAGGTCACCTCGATGAAGCAG 1921
| |||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 1880 TAGATCATTTTTCATGCTTAGTTGACCTTCTTGGTCGAGCGGGCCACCTCGATGAAGCGG 1939
Query 1922 AAAGCTTGGTGAAAATCAGCGAGAAGACCATTGGGTCTCGGGTAGATGTGTGGTGGGCTT 1981
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1940 AAAGCTTGGTGAAAATCAGCGAAAAGACCATCGGGTCTCGGGTAGATGTGTGGTGGGCTT 1999
Query 1982 TGTTTAGTGCTTGTGCTGCTCATGGAGATTTGAAACTAGGGAAAATGGTTGCGAGGTTAC 2041
|||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||
Sbjct 2000 TGTTTAGTGCTTGTGCTGCTCATGGAGATTTGAAGCTAGGGAAGATGGTTGCGAAGTTAC 2059
Query 2042 TAATGGAGAAAGAGAAGAATGATCCATCGGTTTATGTTCAACTGTCGAATATATACGCAG 2101
||||||||||||||||| |||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 2060 TAATGGAGAAAGAGAAGGATGATCCATCAGTTTATGTTCAACTGTCCAATATCTACGCAG 2119
Query 2102 GAGCTGGTTTGTGGAAAGAAGCAGAAGAGACGAGAAAAGCCATCAACATGATTGGAGCTA 2161
|||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 2120 GAGCTGGTATGTGGAAAGAAGCAGAAGAGACGAGAAGAGCCATAAACATGATTGGAGCTA 2179
Query 2162 TGAAACAACGAGGTTGCAGCTGGATGAGATTGTAA 2196
|||||||||||||||||||||||||||||||||||
Sbjct 2180 TGAAACAACGAGGTTGCAGCTGGATGAGATTGTAA 2214
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108935182650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5