BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485337
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49750.1 | Symbols: AtRLP44, RLP44 | receptor like protein 4... 1341 0.0
AT5G65830.1 | Symbols: ATRLP57, RLP57 | receptor like protein 5... 617 4e-176
> AT3G49750.1 | Symbols: AtRLP44, RLP44 | receptor like protein
44 | chr3:18450426-18451494 REVERSE LENGTH=1069
Length=1069
Score = 1341 bits (726), Expect = 0.0
Identities = 790/822 (96%), Gaps = 0/822 (0%)
Strand=Plus/Plus
Query 22 AGTTACCGGTTACTCCTTCTCCTTCTACTAATCTTCGAAACGACACGACGTTTAACCACC 81
||| |||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||
Sbjct 76 AGTCACCGGTTACTCCTTCTCCTTCTACTAATCTTCCAAACGGCACAACGTTTAACCACC 135
Query 82 GCTGATCCAAACGACGAAGCGTGTTTAAAAAACCTCCGGCAAAACTTAGAAGATCCGGCG 141
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 136 GCCGATCCAAACGACGAAGCGTGTTTGAAAAACCTCCGGCAAAACTTAGAAGATCCGGCG 195
Query 142 AGTAATCTCCGTAACTGGACAAACTCCGTCTTCTCAAATCCATGCTCCGGCTTCACCTCT 201
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 AGTAATCTCCGTAACTGGACAAACTCCGTCTTCTCAAATCCATGCTCCGGCTTCACCTCA 255
Query 202 TACCTCCCCGGAGCTACCTGTAACAACGGGAGAATCTACAAActctctctcactaacctc 261
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 256 TACCTCCCCGGAGCTACCTGTAACAACGGAAGAATCTACAAACTCTCACTCACAAACCTC 315
Query 262 tctctcCGCGGCTCAATCTCACCGTTTCTATCAAACTGTACAAATCTCCAATCCCTAGAT 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 TCTCTCCGCGGCTCAATCTCACCGTTTCTATCAAACTGTACAAATCTCCAATCCCTAGAT 375
Query 322 CTATCTTCAAACCAGATCTCCGGTATCATCCCACCGGAGATTCAGTTTCTCGTTAACCTC 381
||||| ||||||||||||||||| | ||||||||||||||||||| |||||||||||||
Sbjct 376 CTATCATCAAACCAGATCTCCGGCGTAATCCCACCGGAGATTCAGTATCTCGTTAACCTC 435
Query 382 GCCGTATTAAACCTCTCATCGAATCAACTCTCCGGCGAAATCACTCCGCAGCTAGCTCTA 441
|||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 436 GCCGTACTAAACCTCTCATCGAATCATCTCTCCGGCGAAATCACTCCGCAGCTCGCTCTT 495
Query 442 TGCGCTTACTTAAACGTAATCGATCTCCACGATAACCAACTATCCGGTCAGATTCCGCAG 501
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 496 TGCGCTTACTTAAACGTAATCGATCTCCACGATAACGAATTATCCGGTCAGATTCCGCAG 555
Query 502 CAATTAGGTCTTTTAGCTCGGTTATCGGCGTTTGATGTGTCGAATAACAAACTTTCCGGT 561
||||||||||| ||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 556 CAATTAGGTCTATTAGCGAGGCTCTCGGCGTTTGATGTGTCGAATAACAAACTTTCCGGT 615
Query 562 CAGATTCCGACGTATTTGTCGAATAGGACTGGGAATTTCCCGAGGTTTAACGCGAGCTCG 621
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 616 CAGATTCCGACGTATTTGTCGAATAGGACTGGGAATTTCCCGAGGTTTAACGCGAGTTCG 675
Query 622 TTCATAGGGAATAAAGGATTGTATGGTTATCCGTTGCAGGAGATGATGATGAAGAGTAAA 681
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 TTTATAGGGAATAAAGGATTGTATGGTTATCCGTTGCAGGAGATGATGATGAAGAGTAAA 735
Query 682 GGTTTATCGGTGATGGCGATTGTTGGGATTGGACTTGGGAGTGGAATCGCGAGCTTGATG 741
||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 GGTTTGTCTGTGATGGCCATTGTTGGGATTGGACTTGGGAGTGGAATCGCGAGCTTGATG 795
Query 742 ATTAGTTTTACTGGTGTTTGTTTATGGTTGAGGATTACTGAGAAGAAGATTGTTGAAGAA 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 ATTAGTTTTACTGGTGTTTGTTTATGGTTGAGGATTACTGAGAAGAAGATTGTTGAAGAA 855
Query 802 GAAGGTAAGATTAGTCAATCTATGCCTGATTACTAAACTTAA 843
|||||||||||||||||||||||||||||||||||||| |||
Sbjct 856 GAAGGTAAGATTAGTCAATCTATGCCTGATTACTAAACGTAA 897
> AT5G65830.1 | Symbols: ATRLP57, RLP57 | receptor like protein
57 | chr5:26342116-26343321 REVERSE LENGTH=1206
Length=1206
Score = 617 bits (334), Expect = 4e-176
Identities = 679/841 (81%), Gaps = 41/841 (5%)
Strand=Plus/Plus
Query 18 GTTTAGTTACCGGTTACTCCTT-CTC--CTT-CTACT-AATCTTCGAAACGACACGA-CG 71
|||||| ||||||||||| ||| ||| ||| || | | | ||||||||| ||| | ||
Sbjct 110 GTTTAGCTACCGGTTACT-CTTCCTCATCTTCCTTTTGAGT-TTCGAAACGGCAC-AGCG 166
Query 72 TTTAACCACCGCTGATCCAAACGACGAAGCGTGTTTAAAAAACCTCCGGCAAAACTTAGA 131
||| ||||| ||| |||||||||||||| || || | || ||||| || | |||||
Sbjct 167 TTTGGTCACCGGTGACCCAAACGACGAAGCATGCTTGACGAATCTCCGTCAGAGTTTAGA 226
Query 132 AGATCCGGCGAGTAATCTCCGTAACTGGACAAACTCCGTCTTC-TCAAATCCATGCTCCG 190
|||||| || | ||||||||||||||||||||| ||| ||||| | |||||| |||||||
Sbjct 227 AGATCCAGCTAATAATCTCCGTAACTGGACAAAATCCTTCTTCAT-AAATCCTTGCTCCG 285
Query 191 GCTTCACCTCTTACCTCCCCGGAGCT-ACCTGTAACAACGGGAGAATCTACAAActct-c 248
||||| | ||||| || | |||| | | || ||||| || ||||| |||||||||| |
Sbjct 286 GCTTCTCTTCTTATCTTCATGGAG-TCATTTGCAACAATGGCAGAATTTACAAACTCTCC 344
Query 249 tctcactaacctctctctcCGCGGCTCAATCTCACCGTTTCTATCAAACTGTACAAATCT 308
| | || || ||||||||||| ||||||||||| |||||||| || || || ||||||||
Sbjct 345 T-TAACAAATCTCTCTCTCCGTGGCTCAATCTCTCCGTTTCTCTCTAATTGCACAAATCT 403
Query 309 CCAATCCCTAGATCTATCTTCAAACCAGATCTCCGGT-ATCATCCCACCGGAGATT-CAG 366
||||||||||||||||||||| |||||||||||||| | ||||| ||| | ||| |||
Sbjct 404 CCAATCCCTAGATCTATCTTCCAACCAGATCTCCGGCGAG-ATCCCGCCGCA-ATTACAG 461
Query 367 TTTCTCGTTAACCTCGCCGTA-TTAAACCTCTCATCGAATCAACTCTCCGG-CGAAATCA 424
||| |||||||||| ||||| |||| | |||| || |||| |||||||| | |||||
Sbjct 462 TTTTTCGTTAACCTAGCCGTTCTTAATC-TCTCTTCTAATCGTCTCTCCGGTC-AAATCT 519
Query 425 CTCCGCAGCTAGCTCTATGCGCTTACTTAAACGTAATCGATCTCCACGATAACCAACTAT 484
| || || | ||||| ||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 520 CACCACAAATCGCTCTCTGCGCTTACTTAAACGTCATCGATCTTCACGATAACCAACTCT 579
Query 485 CCGGTCAGATTCCGCAGCAATTAGGTCTTTTAGCTCGGTTATCGGCGTTTGATGTGTCGA 544
||||||| |||||| || || || ||| | ||| | ||| ||||||||||||| || |
Sbjct 580 CCGGTCAAATTCCGTTTCAGTTCGGGCTTCTCGCTAGATTAACGGCGTTTGATGTCTCTA 639
Query 545 ATAACAAACTT-TCCGGTCAGATTCCGACGTATTTGTCGAATAG-G-A-CTGGGAATTTC 600
|||||||| || |||||||||||||| || || || ||| | | | | | || || ||
Sbjct 640 ATAACAAA-TTATCCGGTCAGATTCCCTCGAATCTGGCGA-T-GCGTAAC-GGAAACTTG 695
Query 601 CCGAGGTTTAACGCGAGCTCGTTCATAGGGAATAAAGGA-TTGTATGGTTATCCGTTGCA 659
||||| ||||| ||||||||||| |||||||| || | | |||| ||| ||||||||| |
Sbjct 696 CCGAGATTTAATGCGAGCTCGTTTATAGGGAACAA-GAAATTGTTTGGGTATCCGTTGGA 754
Query 660 GGAGATGATGATGAAGAGTAAAGGTTTATCGGTGATGGCGATTGTTGGGATTGGACTTGG 719
|||||||| | ||| | || || || ||| | ||||||||||||||||||||||||||
Sbjct 755 GGAGATGA--A-GAACA--AA-GGATTGTCGATAATGGCGATTGTTGGGATTGGACTTGG 808
Query 720 GAGTGGAATCGCGAGCTT-GATGATTAGTTTTACTGGTGTTTGTTTATGGTTGAGGATTA 778
||||||||||||||||| | ||||||| || ||||| |||||| ||||||||| |||||
Sbjct 809 AAGTGGAATCGCGAGCTTAG-TGATTAGCTTCACTGGAGTTTGTATATGGTTGAAGATTA 867
Query 779 CTGAGAAGAAGATTGTTGAAGAAGAAGGTAAGATTAGTCAATCTATGCCTGATTACTAAA 838
| ||||| ||||| | ||||||||||| ||||| ||||| || ||||||| ||||||||
Sbjct 868 CAGAGAAAAAGATGGAGGAAGAAGAAGGAAAGATAAGTCACTCCATGCCTGTTTACTAAA 927
Query 839 C 839
|
Sbjct 928 C 928
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41091532246
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5