BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485340
Length=1601
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49790.1 | Symbols: | Carbohydrate-binding protein | chr3:1... 2039 0.0
> AT3G49790.1 | Symbols: | Carbohydrate-binding protein | chr3:18468051-18469763
REVERSE LENGTH=1713
Length=1713
Score = 2039 bits (1104), Expect = 0.0
Identities = 1291/1376 (94%), Gaps = 33/1376 (2%)
Strand=Plus/Plus
Query 229 ATGGATAAGTTAGGGTTGAGGAAAAGGGGTTATTTTGATTTTGCTCTCAAGAACAAAAAA 288
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 368 ATGGATAAGTTAGGGTTGAGCAAAAGGGGTTATTTTGATTTCGCTCTCAAGAACAAAAAA 427
Query 289 TGGATTTTATTAGCAGTAAGTGGTTATGGTGCTTTTAGGGTTTATTATTCTCCTTCAATT 348
||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 428 TGGATATTATTAGCAGTAAGTGGTTACGGTGCTTTTAGGGTTTATCATTCTCCTTCAATT 487
Query 349 TCCCAGAAACGCAAACAAATCTCTAAGCTTTTTACTCTTCTTCTCAATCTCATCGAAGCT 408
||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 488 TCCCAGAAACGGAAACGAATCTCTAAGCTTTTCACTCTTCTTCTCAATCTCATCGAAGCT 547
Query 409 GCTTCTGATTCCGCTGAAACTGTTAGTGTTATCTCCAAAGATCTCACTGTCTTTCTCAGA 468
|||||||||||||||||||| ||||||||||||||||||||||| || | |||||||||
Sbjct 548 GCTTCTGATTCCGCTGAAACCGTTAGTGTTATCTCCAAAGATCTAACAGAGTTTCTCAGA 607
Query 469 TCCGATTCAGATCAAATCCCAAATAGTTTCAAGCAGATTTCGAAAATCGCGAAATCAGAT 528
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 608 TCCGATTCAGATCAAATCCCAAATAGTTTGAAGCAGATTTCCAAAATCGCGAAATCAGAT 667
Query 529 GAGTTTAATTCTTCTTTGATCAGATTCACTCAAGCTATGACTGTTGGATTGATCCGTGGA 588
||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 668 GAGCTTAATTCTTCTTTGATCCGATTCACTCAAGCTATGACCGTTGGATTGATCCGTGGA 727
Query 589 ATTGATGATGGATCCGGTTCGGGTTTTTCTGATCGGGTTATGGATAAGCTGTTTACTAAA 648
||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| |||
Sbjct 728 ATTGATGATGGATCCGGGTCGGGTTTTACTGATCGGGTTATGGATAAGCTCTTTACGAAA 787
Query 649 TCCGGGTCGGGTTTTGCTTCGGCTATTGTTGGTAGCTTTGCGAGAAACTTAGTCGTTGCG 708
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 788 TCCGGGTCGGGTTTTGCTTCGGCGATTGTTGGTAGCTTTGCGAGGAACTTAGTCGTTGCG 847
Query 709 TTTTATTCATCATCCAGCGACGGTGAATCTCCGATCTTTTCGAATTCGAAGTTGCTGGAC 768
||||||| | ||| || ||| | | | || ||||||||||| ||||| |||
Sbjct 848 CTTTATTC--C-TCC-GC--CGGCG-A--T-GGA-----TCGAATTCGAAATTGCTCGAC 892
Query 769 GCGGTTTTTTCCGATGATGGGAGGAGATTGATCGGCGATTGCGTTCAGCGTTTCGTGAGT 828
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 GCGGTTTTCTCTGATGATGGGAGGAGATTGATCGGCGATTGCGTTCAGCGTTTCGTGAGT 952
Query 829 ACTGCGGTTTCGGTTTATCTCGATAAGACGAGTGACGTTAACGTTTTCGAGGATTTATTC 888
|||||||||||||||||||||||||||||||| || |||||||| ||||| |||||||||
Sbjct 953 ACTGCGGTTTCGGTTTATCTCGATAAGACGAGCGATGTTAACGTATTCGACGATTTATTC 1012
Query 889 GCCGGTTTAACCAATCCAAAACACGAAGGGAAGGTTAAGCAAACGCTTGTGACGCTATGT 948
||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 1013 GCCGGTTTAACCAATCCGAAACATGAAGGAAAGGTTAAGCAAACGCTTGTAACGCTATGT 1072
Query 949 AATAACGCGGTTGAAACGTTTGTTAGAGCGTCGCGGAAACCGGTTCAATTGAACCGATCA 1008
|| | ||||||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1073 AACAGCGCGGTTGAGACGTTTGTAAGAGCGTCGCGGAAACCGGTTCAATTGAACCGGTCA 1132
Query 1009 TCGTCATGTCAAGATTCGTCTCAAACGCTGACCGTTGGATCATCGAAAC-AGACGACGTG 1067
|||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||
Sbjct 1133 TCGTCATGTCAAGATTCGTCTCAAACGCTGACCGTTGGATCAACGAAACAAG-CGACGTG 1191
Query 1068 GATCGATCGGGTATCGTCGTCGTTATCGGTACCGAGTAACCGGAAATACGTGGTGGATTT 1127
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1192 GATCGATCGGGTGTCGTCGTCGTTATCGGTACCGAGTAACCGGAAATATGTGGTGGATTT 1251
Query 1128 AACCGGGCGGGTAACGTTTGAGACGGTTAGATCGTTGTTAGAAGTGTTGATTgagagagc 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 AACCGGGCGGGTAACGTTTGAGACGGTTAGATCGTTGTTAGAAGTGTTGATTGAGAGAGC 1311
Query 1188 aaatggtaaagtggagagttatgtggagaaagtgagagagagaggaaacgagacaaggag 1247
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1312 AAATGGTAAAGTGGAGAGTTATGTGGAGAAAGTGAGAGAGAGAGGAAATGAGACAAGGAG 1371
Query 1248 atttgtgagagtTAAAACATCACTTCTTCATAGTTTATGTTTGTCTCTATGTTTACAGAT 1307
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1372 ATTTGTGAGAGTTAAAACATCACTTCTTCATAGTTTATGTTTGTCTCTCTGTTTACAGAT 1431
Query 1308 TGTTGAAGCTCCATGGATGCTGACTCCAAGAAACTGATTTT-GGATTTTCAGGCTAAAAG 1366
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1432 TGTTGAAGCTCCATGGATGCTGACTCCAAGAAACTGATTTTCGGATTTTCAGGCTAAAAG 1491
Query 1367 ACAAGAAACACTTTTGTGTTTGTTTGTTTGGTTTAATTCTTGGATTCATCAATCAAATTT 1426
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1492 ACAAGAAACACTTTTGTGTTTG---GTTT-----AATTCTTGGATTCATCAATCAAATTT 1543
Query 1427 GATGTAAAATTGttttttttttaaaaaattttttatttgaggaggtgattgtttttgact 1486
|||||||||||||||||||||| | |||| |||||||||| |||||||||||||||
Sbjct 1544 GATGTAAAATTGTTTTTTTTTTTTA---TTTT--ATTTGAGGAGATGATTGTTTTTGACT 1598
Query 1487 ttttttggatagaaagaaatgggttggtttgaatgttttttt-ggatttggATATTTGGA 1545
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1599 TTTTT-GGATAGAAAGAAATGGGTTGGTTTGAATGTTTTTTTTGGATTTGGATATTTGGA 1657
Query 1546 TAATGATAAGTGTGGGACATTATTTGTTACACTTTTGTGGATAATATATGGTATGG 1601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1658 TAATGATAAGTGTGGGACATTATTTGTTACACTTTTGTGGATAATATATGGTATGG 1713
Score = 272 bits (147), Expect = 7e-72
Identities = 211/238 (89%), Gaps = 19/238 (8%)
Strand=Plus/Plus
Query 1 TCTCTCTTTCTCTTTTGTTACAATTTCTGTTAACAAACTTTGACGTCACCATTTGAATTC 60
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 37 TCTCTCTTACTCTTTTGTTACAA-TTCTGTTAACAAACTTTGACGTCACCATTTGAATTC 95
Query 61 TTATCCAATT-CCATTCCCTAACAGAa-ttttcc-ctttttctctttctctttttcattc 117
|||||||||| ||||| |||||||||| |||||| |||||||||||||||||||||||||
Sbjct 96 TTATCCAATTCCCATTTCCTAACAGAATTTTTCCTCTTTTTCTCTTTCTCTTTTTCATTC 155
Query 118 cttccagattcttgattttcccacttccttctttACTC-T-A---TCTT-GCTCTGTTTT 171
||| |||||||||||| ||||||||||||||||| || | | |||| ||||||||||
Sbjct 156 CTTAGAGATTCTTGATTCTCCCACTTCCTTCTTTAGTCGTTACAGTCTTTGCTCTGTTTT 215
Query 172 CaaaaaaaaaaaaaaaaaaGTTGCTTCCTTTCTCAT-TTATTTTCCCGGGAAAGTGAA 228
|||||||||||| |||| ||||||||||| || ||||||||||||||||||
Sbjct 216 CAAAAAAAAAAA-------GTTGGTTCCTTTCTCAACTT-TTTTCCCGGGAAAGTGAA 265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79065858375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5