BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485341
Length=2194
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49810.1 | Symbols: | ARM repeat superfamily protein | chr3... 2996 0.0
> AT3G49810.1 | Symbols: | ARM repeat superfamily protein | chr3:18474537-18476834
REVERSE LENGTH=2298
Length=2298
Score = 2996 bits (1622), Expect = 0.0
Identities = 1932/2076 (93%), Gaps = 44/2076 (2%)
Strand=Plus/Plus
Query 101 tttGTACTGGGTTCTTTGAtttttttttttG-TTCCTTGTCATTATTCTTCATGATTTCT 159
|||||||||||||| |||| ||||||||| | |||||| |||||||||||||||||| ||
Sbjct 164 TTTGTACTGGGTTCGTTGA-TTTTTTTTTGGTTTCCTTCTCATTATTCTTCATGATTCCT 222
Query 160 CC-TTTTTCTGTTTCTCGAAATTTGTGGTTATAAAATTCACA---TTTTTGAGAGCAGTT 215
|| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 223 CCTTTTTTCTGTTTCTCGAAATTTGTGGTTATAAAATTCACATTTTTTTTGGGAGCAGTT 282
Query 216 GGGCTTCTTCAATCATGTGTTTATGATGTTTTGTTTATTAACAAGAGTTGAATGAATCTT 275
||| | ||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 283 GGG--T-TTCAATCATGTGTTTATGATGTTAT-ATTATTAACAAGAGTTGAATGAATCTT 338
Query 276 CTTTTTGACCGTTgaaaagagagaaaacaaaattaaagcaaaaaagaagaagaagaagaa 335
|||||||||||||||||||||| ||||| ||||||||||||| | ||| |||||||||||
Sbjct 339 CTTTTTGACCGTTGAAAAGAGA-AAAACTAAATTAAAGCAAAGAGGAAAAAGAAGAAGAA 397
Query 336 gaaga-agaagaTTG-TGTTGTTGTTTTAACGCTTCTTTGTGAGATAAAGACATGC-TTT 392
||||| | | ||| ||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 398 GAAGATTG-TG-TTGTTGTTGTTGTTTTAACGCTTCTTTCTGAGATAAAGACATGCGTTT 455
Query 393 -TCTATCA-AAGGCATTATTTTCCCAAATGTTGTGAGTTTGAGAAGAAACGTCttttttt 450
| | ||| |||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 456 CTTTTTCAGCTCACATTATTTTCCCAAATGTTGTGAGTTTGAGAAGAAAAGTCTGTTTTT 515
Query 451 ttttGTGAGA-GATTTTGTTTCTTTAGATTCTTTAGAAATGCCGATGTTTCAGCCGTTAA 509
|| | ||||| |||||||||| |||||||| | |||||||||||||||||||||||||
Sbjct 516 TTAT-TGAGATTTTTTTGTTTCTATAGATTCTATCGAAATGCCGATGTTTCAGCCGTTAA 574
Query 510 AGAGAGATGGGTTGATAGGATTTGAAGGTGGTGGTGATGGGCAAGTCTTAGATCTGGATA 569
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 AGAGAGATGGGTTAATAGGATTTGAAGGTGGTGGTGATGGGCAAGTCTTAGATCTGGATA 634
Query 570 CAGCGGTGAAAGATGGAGTTCTCGGTGGTGTTAA------T-G-G-TGGAGTTGTTGATG 620
| || ||||||||||||||||||||||||||||| | | | ||||||||||||||
Sbjct 635 CTGCAGTGAAAGATGGAGTTCTCGGTGGTGTTAATGGTGGTGGTGTTGGAGTTGTTGATG 694
Query 621 AGAAATTGGATCTGAAGAAGATGATAAAGGAGCTAGATTTACAAGATATACCTTCTGTTT 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 AGAAATTGGATCTGAAGAAGATGATAAAGGAGCTAGATTTACAAGATATACCTTCTGTTT 754
Query 681 TCATTTGTCCTATCTCGTTAGAGCCGATGCAAGATCCTGTGACCTTGTGTACTGGTCAAA 740
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 755 TCATTTGTCCTATCTCCTTAGAGCCGATGCAAGATCCTGTGACTTTGTGTACTGGTCAAA 814
Query 741 CCTATGAAAGGTTAAACATTCACAAATGGTTTAACCTAGGTCACTTGACTTGTCCTACTA 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CCTATGAAAGGTTAAACATTCACAAATGGTTTAACCTAGGTCACTTGACTTGTCCTACTA 874
Query 801 CAATGCAAGAGCTTTGGGATGATACGGTAACTCCTAATAAAACTCTTCATCATTTGATCT 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 CAATGCAAGAGCTTTGGGATGATACGGTAACTCCTAATAAAACTCTTCATCATTTGATCT 934
Query 861 ATACTTGGTTCTCTCAGAAGTATGTGTTGATGAAGAAACGCTCTGAGGATGTTCAAGGAC 920
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 935 ATACTTGGTTCTCTCAGAAGTATGTGTTGATGAAGAAACGTTCTGAGGATGTTCAAGGAC 994
Query 921 GAGCTATTGAGATTTTGGGGACTTTGAAGAAAGCTAAAGGTCAAGCTAGGGTTCATGCGT 980
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 995 GAGCTATTGAGATTTTGGGGACTTTGAAGAAAGCTAAAGGTCAAGCTAGGGTTCATGCTT 1054
Query 981 TGAGTGAGCTTAAGCAGATTGTTGTTGCTCATCTTATGGCCAGGAAGACTGTTGTTGAAG 1040
||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1055 TGAGTGAGCTTAAACAGATTGTTATTGCTCATCTTATGGCGAGGAAGACTGTTGTTGAAG 1114
Query 1041 AAGGAGGTGTCTCTGTGATCTCTTCTCTTTTGGGTCCTTTTACTTCTCATGCTGTTGGAT 1100
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 AAGGTGGTGTCTCTGTGATCTCTTCTCTTTTGGGTCCTTTTACTTCTCATGCTGTTGGAT 1174
Query 1101 CTGAGGTTGTTGCTATTCTTGTCAGTCTTGATCTTGATTCGGATTCGAAATCCGGGTTGA 1160
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 1175 CTGAGGTTGTTGCTATTCTTGTGAGTCTTGATCTTGATTCTGATTCGAAATCCGGCTTGA 1234
Query 1161 TGCAACCGGCTAAGGTTTCTTTGATTGTTGATATGTTGAATGATGGATCCAATGAGACTA 1220
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1235 TGCAACCAGCTAAGGTTTCTTTGATTGTTGATATGTTGAATGATGGATCTAATGAGACTA 1294
Query 1221 AAATCAATTGTGCGAGATTGATTAAAGGATTGGTGGAAGAGAAGGGGTTTAGAGCAGAGC 1280
| ||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1295 AGATCAATTGTGCTAGATTGATTAGAGGATTGGTGGAAGAGAAAGGGTTTAGAGCAGAGC 1354
Query 1281 TGGTTTCGAGTCATAGTTTGCTTGTTGGGTTAATGAGATTGGTTAAGGATAAGAGACATA 1340
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1355 TTGTTTCAAGTCATAGTTTGCTTGTTGGGTTAATGAGATTGGTTAAGGATAAGAGACATA 1414
Query 1341 GAAATGGAGTTTCTCCTGCACTTGGGTTGCTTAAACCGATTTCGGTTCATAAACAAGTTC 1400
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1415 GAAATGGAGTATCTCCTGCACTTCGGTTGCTTAAACCGATTTCGGTTCATAAACAAGTTC 1474
Query 1401 GAAGCTTGATGGTTAGCATTGGAGCAGTGCCTCAGTTAGTCGATATCTTACCGTCTTTAG 1460
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1475 GAAGCTTGATGGTTAGCATTGGAGCAGTGCCTCAATTAGTTGATATCTTACCGTCTTTAG 1534
Query 1461 ACCCGGAATGTTTGGAGTTAGCTCTGTTTGTTCTTGATGCTTTGTGTTCAGATATGGAAG 1520
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1535 ACCCGGAATGTTTGGAGTTAGCTCTGTTTGTTCTTGATGCTTTGTGTACAGACGTGGAAG 1594
Query 1521 GAAGAGTTGCTGTCAAAGACTCTGCAAACACGATACCGTATACCGTTAGGGTGCTGATGA 1580
||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 1595 GAAGAGTTGCTGTCAAAGACTCTGCAAACACAATACCTTATACAGTTAGGGTGCTGATGA 1654
Query 1581 GGGTGTCTGAGAATTGCACTAGCTACGCGCTGTCGATTCTTTGGTCTGTCTGCAAATTAG 1640
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1655 GGGTGTCTGAGAATTGCACTAACTACGCGCTGTCGATTCTTTGGTCTGTCTGCAAATTAG 1714
Query 1641 CTCCAGAAGAATGTTCACCACTTGCTGTTGAGGTCGGTCTTGCTGCAAAGTTGTTACTCG 1700
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1715 CTCCAGAAGAATGTTCACCACTTGCTGTTGAGGTTGGTCTTGCTGCAAAGCTGTTACTCG 1774
Query 1701 TGATCCAGAGCGGGTGTGATGCAGCGTTGAAGCAGCGGTCAGCGGAGCTACTCAAGCTCT 1760
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 1775 TGATCCAGAGCGGGTGTGATGCAGCGTTGAAGCAGCGGTCAGCAGAGCTACTTAAGCTTT 1834
Query 1761 GTAGTCTACATTATTCAGACACCATGTTTATTTCCAAATGCAAACTCACAAGGACAATCC 1820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1835 GTAGTCTACATTATTCAGACACCATGTTTATTTCCAAATGCAAACTCACAAGGACAATCC 1894
Query 1821 AATAGCAAAAGTT-TAAATCGA-CACATGATTCAGCGGGGTTATCAATGAAACGGTAAAT 1878
||||||| | | | | || |||| ||||||||||| ||||| ||||||||||||||
Sbjct 1895 AATAGCATTGGCACTGATT-GATCACAGGATTCAGCGGG-TTATCCATGAAACGGTAAAT 1952
Query 1879 GTGCATTGC-----GAATCTTCCTCTGCCCCTGATGTATATATAGATGAAGAGTTTGAAG 1933
||||||||| |||||| ||| ||||| |||||||||||||||||| ||||||||||
Sbjct 1953 GTGCATTGCATTACGAATCTGCCTTTGCCC-TGATGTATATATAGATGATGAGTTTGAAG 2011
Query 1934 ATCGAGCTATTGGTTTTGGTGGTAACAATTCAAAAGAAGAAGAAATCCGCAGATGGAAAC 1993
|| ||||||||||||||||||||||||||||||| ||||| | |||| || |||||||||
Sbjct 2012 ATTGAGCTATTGGTTTTGGTGGTAACAATTCAAAGGAAGAGGCAATCAGCTGATGGAAAC 2071
Query 1994 ACGGGGAAGATGAAGTAACCGGGCGGGTGAGGGATCGGTGTGTAATGCTATCTTGTCGGT 2053
| |||||||| |||| ||||||| || |||||||||||| ||||||| || | | | |||
Sbjct 2072 ATGGGGAAGACGAAGAAACCGGGTGGTTGAGGGATCGGTATGTAATGTTACCATATTGGT 2131
Query 2054 TCGTTATGCAATAAGCATTGGGAATTAGAAAAAA--TGTGTAAAGTTACTGCCTTTGGTT 2111
||||| |||||||||||||||||||||||||||| ||||||||||||| |||| ||| |
Sbjct 2132 TCGTTTTGCAATAAGCATTGGGAATTAGAAAAAAACTGTGTAAAGTTACCGCCTCTGGCT 2191
Query 2112 CAA-TCAATTTCAGAAGAA-AAGGGAAAAAGAAGAA 2145
||| ||||||||||||||| || | |||||||||||
Sbjct 2192 CAAATCAATTTCAGAAGAACAAAG-AAAAAGAAGAA 2226
Score = 161 bits (87), Expect = 2e-38
Identities = 99/104 (95%), Gaps = 3/104 (3%)
Strand=Plus/Plus
Query 1 CAAACAAAAGAGAGAGTACGGG--T-TTCTTCGTCATTCTCACGAATTCGTGAAtttttt 57
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||
Sbjct 24 CAAACAAAAGAGAGAGTACGGGTTTCTTCTTCGTCATTCTCACGAATTCGTGAATTTATT 83
Query 58 tttGTTTTCGTCATCTGGGTTTTCTCAAATTCTCTTCCtttttt 101
|||| |||||||||||||||||||||||||||||||||||||||
Sbjct 84 TTTGATTTCGTCATCTGGGTTTTCTCAAATTCTCTTCCTTTTTT 127
Score = 62.1 bits (33), Expect = 2e-08
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 2162 TTTGGGTTCTTGTGAGAGGTTGTTTTGCTTTTT 2194
|||||||||||||||||||||||||||||||||
Sbjct 2265 TTTGGGTTCTTGTGAGAGGTTGTTTTGCTTTTT 2297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108834781560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5