BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485343 Length=1695 Score E Sequences producing significant alignments: (Bits) Value AT3G49840.1 | Symbols: | Uncharacterized conserved protein (DU... 2209 0.0 > AT3G49840.1 | Symbols: | Uncharacterized conserved protein (DUF2215) | chr3:18484513-18487043 FORWARD LENGTH=1768 Length=1768 Score = 2209 bits (1196), Expect = 0.0 Identities = 1538/1698 (91%), Gaps = 43/1698 (3%) Strand=Plus/Plus Query 21 aaaaaaCCAGAAACCCAGAAAAATCGATGAGTGA--C-TCATCAGTCTTTGTCCGAAGCT 77 |||||| || |||||||||||||||||||||||| | ||||||||| |||||||||||| Sbjct 15 AAAAAA-CA-AAACCCAGAAAAATCGATGAGTGACTCATCATCAGTCATTGTCCGAAGCT 72 Query 78 CACATTTCATTGTCGTGATTCTCTTCCTCAACCTCTTGACTTTCTTCTCCGTTGTCTCCT 137 || |||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| Sbjct 73 CAAATTTCATTGTCGTGATTCTCTTCCTCAACCTCGTCACTTTCTTCTCCCTTGTCTCCT 132 Query 138 CCGATGAACTTTTCGTCGTTGTGGATGAAACTGGTTCACTACAAGTAACTCCAAGAACAG 197 || |||||||| || | | ||||| ||||||||||||||||||||| ||||||||||||| Sbjct 133 CCAATGAACTTGTCTTTGCTGTGGGTGAAACTGGTTCACTACAAGTGACTCCAAGAACAG 192 Query 198 AGGTGATAGATT---C---TCT------TGGTATAACATCGATATGTGAGAGATTACATA 245 |||||||| ||| | ||| ||||||||||||||||||||||||||||||| Sbjct 193 AGGTGATATATTCACCTGGTCTGAAACGAGGTATAACATCGATATGTGAGAGATTACATA 252 Query 246 TCCATGGATTACAAAGAAGACTTAAGCACATTGATAGATATGCACACTCACTAAAGTTGA 305 ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 253 TCCATGGATTACAAAGAAGACTTGAGCACATTGATAGATATGCACATTCACTAAAGTTGA 312 Query 306 CCCTTTTGAGTAATAATGCTTCCAACAGTATAGACGTTTGTTTCCACAGGAATTCGTCGC 365 | ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 313 CTCTTTTGAGTAATAATGCTTCCAACAGTATCGACGTTTGCTTCCACAGGAATTCGTCGC 372 Query 366 GTGCAATTGGAATGTGTCCTCATGGTCAGTGGAAGAAAGTGTCCAAAGGGTTATCATGGG 425 |||||||||||||||||||| || ||||||||||| |||||||||||||||| | |||| Sbjct 373 GTGCAATTGGAATGTGTCCTGATAATCAGTGGAAGAGAGTGTCCAAAGGGTTACCTTGGG 432 Query 426 TTGGGATAATGTCACCTTTTGACTCTAAGATTCTTGATATAAGAGCATTTGGTGGCTCGT 485 |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| | Sbjct 433 TTGGGATAATGTCACCTTTTGACTATAAGATTCTTGATATAAGAACATTTGGTGGCTCAT 492 Query 486 CTAAAGTCATCACCTTGGAGCT-GTCTGCTAAACAAGAGTTTTTCATGTACCGGATTGtt 544 |||| |||| |||| ||||| | || ||||||||||||||||||||| ||||||||||| Sbjct 493 CTAATGTCAGCACCGTGGAGTTGGT-TGCTAAACAAGAGTTTTTCATATACCGGATTGTG 551 Query 545 tttttAATCATGGGGATAGTGTTACTGAGTTTGGCTTCTAGACTTAGCAAATCAGTAGTG 604 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 552 TTTTTAATCATGGGGATAGTGTTACTGAGTTTGGCTTCTAGACTTAGCAAATCAGTTGCG 611 Query 605 TTTTACTATATTGGTGCAATGTCTATTGGGATTATCATTCTTGTAACTCTTATCATTAAT 664 ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 612 TTTTACTATATCGGTGCAATGTCTATTGGGATTGTCATTCTTGTAACTCTTATCATTAAT 671 Query 665 CAGGGGATAAAGCGTCTCCCAACCGGAGGGAAGAGTCGGTTTGAGTTATTTCTCTACTCG 724 ||||||||||||||||| ||||| ||||||||||||| ||| |||||||| |||||||| Sbjct 672 CAGGGGATAAAGCGTCTACCAACTAGAGGGAAGAGTCGTTTTCAGTTATTTTTCTACTCG 731 Query 725 TCTATGATTGGTGTGGGAGGTTACTTTCTTCAATACATACGCGGTTTAATTCAAGATCTG 784 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 732 TCTATGATTGGTGTGGGAGGTTACTTTCTTCAATACATACGCGGTTTAGTTCAAGATTTG 791 Query 785 CTAATGCAGATAGGAATCAGTGAAGATTTGTATATCCCTCTGGCGATTGTTTTGGTTGTG 844 ||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct 792 CTAATGCAGATAGAAATCAGTGAAGATTTGTACATCCCTCTGGCGATTCTTTTGGTTGTG 851 Query 845 TTTGCAATTATGTTGGGAGCATGGTCAGGATTTTGGATTGTTAAGAAATTTGTTGCGACT 904 |||| | ||||||||||||| |||||||||||||||| ||| ||||||||||||| ||| Sbjct 852 TTTGTATTTATGTTGGGAGCGTGGTCAGGATTTTGGACTGTCAAGAAATTTGTTGTGACA 911 Query 905 AAAGATGGTTCTATTGACATTGGTACAACAATCTTTGTCTCTTGGTCCATCCGTGCTTTT 964 |||||||||||| |||||||| ||||| ||||||||||||||||||||||||| |||||| Sbjct 912 AAAGATGGTTCTGTTGACATTAGTACATCAATCTTTGTCTCTTGGTCCATCCGAGCTTTT 971 Query 965 GCTGTGGCTCTGATCCTTCAGAGCTCTGTAGATCCCTTGCTTGCTGGAGGAGCGTTGATT 1024 ||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||| Sbjct 972 GCTGTGGCTCTGATCCTTCAGAGCTCTTTAGATCCATTACTTGCTGGAGGAGCGTTGATA 1031 Query 1025 ACTGGAATTCTCATCTCATCGATTCTAAAGAGTATCAGCAGAAAGCTGTTAGCTCAAAGA 1084 ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct 1032 ACTGGAATTCTCATCTCATTGATTCTAAAGAGTATTAGCAGAAAGCTGTTAGCTCAAAGA 1091 Query 1085 ATCTATGAGCAAGAAGATGAAACTGAGAGTTGTAGCCCCGGCTTAATCCATGCTACTTCG 1144 || ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 1092 ATATATGAGCAAGATGATGAAACTGAGAGTTGTAGCCCCGGCTTGATCCATGCTACCTCG 1151 Query 1145 TTTGCTTCTCCTCTTCCTAGAGGTTCCAACAAGATGTCT-AGGACAGTACCACTGTCTGA 1203 |||||||||||||||||||||||||||||||||| || | |||||||||||| | ||||| Sbjct 1152 TTTGCTTCTCCTCTTCCTAGAGGTTCCAACAAGAAGT-TGAGGACAGTACCATTATCTGA 1210 Query 1204 TTCAGATATATTCCCTTCTTCATTCCACAAAACACCAGAAGGGAGAAGAAAGCTAACGAA 1263 |||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1211 GTCAGATATCTTTCCTTCTTCATTCCACAAAACACCAGAAGGGAGAAGGAAGCTAACGAA 1270 Query 1264 TGAAGAGTTGGAAAAGTTCACTAAAGAGAGCACGGAAAAGGCATTGAAGGAATTGGTTTC 1323 ||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1271 GGAAGAGTTGCAAAAATTCACTAAAGAGAGCACGGAAAATGCATTGAAGGAATTGGTTTC 1330 Query 1324 TTCACCCGGTTTCGGCGAATGGGCGGTGAAAAATGCTACAAGAATTAATGTAAATCCCTT 1383 |||||| ||||| ||||||||||||||||||||||||| |||||| | ||||||||| | Sbjct 1331 TTCACCTGGTTTTGGCGAATGGGCGGTGAAAAATGCTAAAAGAATCACTGTAAATCCGAT 1390 Query 1384 AAAGAAATCGTCCAGTAAGTTGACTTG-TAC-GATTAAGCGCCGAAGATGGTTCCTCTGG 1441 |||| ||||||| ||||| | | | | ||| | |||||||| ||||| ||||||||||| Sbjct 1391 AAAGGAATCGTCAAGTAAATAGGGT-GATACTG-TTAAGCGCAGAAGAAGGTTCCTCTGG 1448 Query 1442 TTCTGAAAACCAAGCAGCTAGGGTAACTTTTTGAACCAGTCGGTGAGTGTAGTAGGTTGC 1501 ||||||||| ||||||||||||| ||||| | ||||||||||| |||||||||||||||| Sbjct 1449 TTCTGAAAAGCAAGCAGCTAGGGGAACTTCT-GAACCAGTCGGAGAGTGTAGTAGGTTGC 1507 Query 1502 TTCTGAATAAAGCAACAAGCCTTGCTTTATATAGTTATATGTAATGTTGTGGAAAAGAAC 1561 || |||| ||||||||||||||||||| ||||| | | || | | ||||||||||| Sbjct 1508 TTGTGAACAAAGCAACAAGCCTTGCTT-ATATA-T-A---GTC-T-TC-TGGAAAAGAAC 1558 Query 1562 CAATCAACAAAGCCGAAAA-GTTGAGGGAtttt-tt-tAG-TCACCAAAATATAACCTTT 1617 ||| | ||| || ||||| |||||| |||| || || ||| |||||| |||||||| Sbjct 1559 TAATGAGCAAGGC-GAAAAAGTTGAGAGATTAACTTCTAAATCAACAAAATGTAACCTTT 1617 Query 1618 GACATAAATTGATCTTGACCAATAAAGATTATACGTTTCCATGTGTGTGTAGTCATTAAT 1677 ||||||||||||| ||||||||||| ||| |||||||||||||||||| |||||| ||| Sbjct 1618 GACATAAATTGATATTGACCAATAA-GATCATACGTTTCCATGTGTGT--AGTCATCAAT 1674 Query 1678 GATGTGAAACTCAATACT 1695 |||||||||||||||||| Sbjct 1675 GATGTGAAACTCAATACT 1692 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83784709605 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5