BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485343
Length=1695
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49840.1 | Symbols: | Uncharacterized conserved protein (DU... 2209 0.0
> AT3G49840.1 | Symbols: | Uncharacterized conserved protein (DUF2215)
| chr3:18484513-18487043 FORWARD LENGTH=1768
Length=1768
Score = 2209 bits (1196), Expect = 0.0
Identities = 1538/1698 (91%), Gaps = 43/1698 (3%)
Strand=Plus/Plus
Query 21 aaaaaaCCAGAAACCCAGAAAAATCGATGAGTGA--C-TCATCAGTCTTTGTCCGAAGCT 77
|||||| || |||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct 15 AAAAAA-CA-AAACCCAGAAAAATCGATGAGTGACTCATCATCAGTCATTGTCCGAAGCT 72
Query 78 CACATTTCATTGTCGTGATTCTCTTCCTCAACCTCTTGACTTTCTTCTCCGTTGTCTCCT 137
|| |||||||||||||||||||||||||||||||| | |||||||||||| |||||||||
Sbjct 73 CAAATTTCATTGTCGTGATTCTCTTCCTCAACCTCGTCACTTTCTTCTCCCTTGTCTCCT 132
Query 138 CCGATGAACTTTTCGTCGTTGTGGATGAAACTGGTTCACTACAAGTAACTCCAAGAACAG 197
|| |||||||| || | | ||||| ||||||||||||||||||||| |||||||||||||
Sbjct 133 CCAATGAACTTGTCTTTGCTGTGGGTGAAACTGGTTCACTACAAGTGACTCCAAGAACAG 192
Query 198 AGGTGATAGATT---C---TCT------TGGTATAACATCGATATGTGAGAGATTACATA 245
|||||||| ||| | ||| |||||||||||||||||||||||||||||||
Sbjct 193 AGGTGATATATTCACCTGGTCTGAAACGAGGTATAACATCGATATGTGAGAGATTACATA 252
Query 246 TCCATGGATTACAAAGAAGACTTAAGCACATTGATAGATATGCACACTCACTAAAGTTGA 305
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 253 TCCATGGATTACAAAGAAGACTTGAGCACATTGATAGATATGCACATTCACTAAAGTTGA 312
Query 306 CCCTTTTGAGTAATAATGCTTCCAACAGTATAGACGTTTGTTTCCACAGGAATTCGTCGC 365
| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 313 CTCTTTTGAGTAATAATGCTTCCAACAGTATCGACGTTTGCTTCCACAGGAATTCGTCGC 372
Query 366 GTGCAATTGGAATGTGTCCTCATGGTCAGTGGAAGAAAGTGTCCAAAGGGTTATCATGGG 425
|||||||||||||||||||| || ||||||||||| |||||||||||||||| | ||||
Sbjct 373 GTGCAATTGGAATGTGTCCTGATAATCAGTGGAAGAGAGTGTCCAAAGGGTTACCTTGGG 432
Query 426 TTGGGATAATGTCACCTTTTGACTCTAAGATTCTTGATATAAGAGCATTTGGTGGCTCGT 485
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
Sbjct 433 TTGGGATAATGTCACCTTTTGACTATAAGATTCTTGATATAAGAACATTTGGTGGCTCAT 492
Query 486 CTAAAGTCATCACCTTGGAGCT-GTCTGCTAAACAAGAGTTTTTCATGTACCGGATTGtt 544
|||| |||| |||| ||||| | || ||||||||||||||||||||| |||||||||||
Sbjct 493 CTAATGTCAGCACCGTGGAGTTGGT-TGCTAAACAAGAGTTTTTCATATACCGGATTGTG 551
Query 545 tttttAATCATGGGGATAGTGTTACTGAGTTTGGCTTCTAGACTTAGCAAATCAGTAGTG 604
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 552 TTTTTAATCATGGGGATAGTGTTACTGAGTTTGGCTTCTAGACTTAGCAAATCAGTTGCG 611
Query 605 TTTTACTATATTGGTGCAATGTCTATTGGGATTATCATTCTTGTAACTCTTATCATTAAT 664
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 612 TTTTACTATATCGGTGCAATGTCTATTGGGATTGTCATTCTTGTAACTCTTATCATTAAT 671
Query 665 CAGGGGATAAAGCGTCTCCCAACCGGAGGGAAGAGTCGGTTTGAGTTATTTCTCTACTCG 724
||||||||||||||||| ||||| ||||||||||||| ||| |||||||| ||||||||
Sbjct 672 CAGGGGATAAAGCGTCTACCAACTAGAGGGAAGAGTCGTTTTCAGTTATTTTTCTACTCG 731
Query 725 TCTATGATTGGTGTGGGAGGTTACTTTCTTCAATACATACGCGGTTTAATTCAAGATCTG 784
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 732 TCTATGATTGGTGTGGGAGGTTACTTTCTTCAATACATACGCGGTTTAGTTCAAGATTTG 791
Query 785 CTAATGCAGATAGGAATCAGTGAAGATTTGTATATCCCTCTGGCGATTGTTTTGGTTGTG 844
||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 792 CTAATGCAGATAGAAATCAGTGAAGATTTGTACATCCCTCTGGCGATTCTTTTGGTTGTG 851
Query 845 TTTGCAATTATGTTGGGAGCATGGTCAGGATTTTGGATTGTTAAGAAATTTGTTGCGACT 904
|||| | ||||||||||||| |||||||||||||||| ||| ||||||||||||| |||
Sbjct 852 TTTGTATTTATGTTGGGAGCGTGGTCAGGATTTTGGACTGTCAAGAAATTTGTTGTGACA 911
Query 905 AAAGATGGTTCTATTGACATTGGTACAACAATCTTTGTCTCTTGGTCCATCCGTGCTTTT 964
|||||||||||| |||||||| ||||| ||||||||||||||||||||||||| ||||||
Sbjct 912 AAAGATGGTTCTGTTGACATTAGTACATCAATCTTTGTCTCTTGGTCCATCCGAGCTTTT 971
Query 965 GCTGTGGCTCTGATCCTTCAGAGCTCTGTAGATCCCTTGCTTGCTGGAGGAGCGTTGATT 1024
||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||
Sbjct 972 GCTGTGGCTCTGATCCTTCAGAGCTCTTTAGATCCATTACTTGCTGGAGGAGCGTTGATA 1031
Query 1025 ACTGGAATTCTCATCTCATCGATTCTAAAGAGTATCAGCAGAAAGCTGTTAGCTCAAAGA 1084
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1032 ACTGGAATTCTCATCTCATTGATTCTAAAGAGTATTAGCAGAAAGCTGTTAGCTCAAAGA 1091
Query 1085 ATCTATGAGCAAGAAGATGAAACTGAGAGTTGTAGCCCCGGCTTAATCCATGCTACTTCG 1144
|| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1092 ATATATGAGCAAGATGATGAAACTGAGAGTTGTAGCCCCGGCTTGATCCATGCTACCTCG 1151
Query 1145 TTTGCTTCTCCTCTTCCTAGAGGTTCCAACAAGATGTCT-AGGACAGTACCACTGTCTGA 1203
|||||||||||||||||||||||||||||||||| || | |||||||||||| | |||||
Sbjct 1152 TTTGCTTCTCCTCTTCCTAGAGGTTCCAACAAGAAGT-TGAGGACAGTACCATTATCTGA 1210
Query 1204 TTCAGATATATTCCCTTCTTCATTCCACAAAACACCAGAAGGGAGAAGAAAGCTAACGAA 1263
|||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1211 GTCAGATATCTTTCCTTCTTCATTCCACAAAACACCAGAAGGGAGAAGGAAGCTAACGAA 1270
Query 1264 TGAAGAGTTGGAAAAGTTCACTAAAGAGAGCACGGAAAAGGCATTGAAGGAATTGGTTTC 1323
||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1271 GGAAGAGTTGCAAAAATTCACTAAAGAGAGCACGGAAAATGCATTGAAGGAATTGGTTTC 1330
Query 1324 TTCACCCGGTTTCGGCGAATGGGCGGTGAAAAATGCTACAAGAATTAATGTAAATCCCTT 1383
|||||| ||||| ||||||||||||||||||||||||| |||||| | ||||||||| |
Sbjct 1331 TTCACCTGGTTTTGGCGAATGGGCGGTGAAAAATGCTAAAAGAATCACTGTAAATCCGAT 1390
Query 1384 AAAGAAATCGTCCAGTAAGTTGACTTG-TAC-GATTAAGCGCCGAAGATGGTTCCTCTGG 1441
|||| ||||||| ||||| | | | | ||| | |||||||| ||||| |||||||||||
Sbjct 1391 AAAGGAATCGTCAAGTAAATAGGGT-GATACTG-TTAAGCGCAGAAGAAGGTTCCTCTGG 1448
Query 1442 TTCTGAAAACCAAGCAGCTAGGGTAACTTTTTGAACCAGTCGGTGAGTGTAGTAGGTTGC 1501
||||||||| ||||||||||||| ||||| | ||||||||||| ||||||||||||||||
Sbjct 1449 TTCTGAAAAGCAAGCAGCTAGGGGAACTTCT-GAACCAGTCGGAGAGTGTAGTAGGTTGC 1507
Query 1502 TTCTGAATAAAGCAACAAGCCTTGCTTTATATAGTTATATGTAATGTTGTGGAAAAGAAC 1561
|| |||| ||||||||||||||||||| ||||| | | || | | |||||||||||
Sbjct 1508 TTGTGAACAAAGCAACAAGCCTTGCTT-ATATA-T-A---GTC-T-TC-TGGAAAAGAAC 1558
Query 1562 CAATCAACAAAGCCGAAAA-GTTGAGGGAtttt-tt-tAG-TCACCAAAATATAACCTTT 1617
||| | ||| || ||||| |||||| |||| || || ||| |||||| ||||||||
Sbjct 1559 TAATGAGCAAGGC-GAAAAAGTTGAGAGATTAACTTCTAAATCAACAAAATGTAACCTTT 1617
Query 1618 GACATAAATTGATCTTGACCAATAAAGATTATACGTTTCCATGTGTGTGTAGTCATTAAT 1677
||||||||||||| ||||||||||| ||| |||||||||||||||||| |||||| |||
Sbjct 1618 GACATAAATTGATATTGACCAATAA-GATCATACGTTTCCATGTGTGT--AGTCATCAAT 1674
Query 1678 GATGTGAAACTCAATACT 1695
||||||||||||||||||
Sbjct 1675 GATGTGAAACTCAATACT 1692
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83784709605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5