BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485344
Length=688
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49845.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 571 3e-162
> AT3G49845.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: root;
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr3:18487258-18488298 FORWARD LENGTH=789
Length=789
Score = 571 bits (309), Expect = 3e-162
Identities = 530/627 (85%), Gaps = 53/627 (8%)
Strand=Plus/Plus
Query 1 GCGAAGAAAAAGAAGCAAGAGGGTTCGTTATAAAGAAAGAAATAAA-CCTCAGATAAGAG 59
|||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||
Sbjct 1 GCGAAGAAAAAGAAGCAA-AGAGTTCGTTATAAAGAAAGAAATAAACCCTCAGATAAGAG 59
Query 60 CATAAC--AG-AG-A-AA-AAGATGTCTTATCAAGATCCACAACATCCCGTTGGTGCTCC 113
|||||| || || | || ||||||||||||||||| ||||||||||||||| |||||||
Sbjct 60 CATAACAGAGAAGAAGAAGAAGATGTCTTATCAAGACCCACAACATCCCGTTAGTGCTCC 119
Query 114 TCCTCCTCAA-GGTAATTCCCAATTTCTTTTCAAAATTTTTTGGGTATTTTTGTTTCTTG 172
|||||||||| ||| | | || || | || || || | | |
Sbjct 120 TCCTCCTCAAGGGT-A-T-CC----TC----C-TAA--GGAAGGATA-TCCACCAGCAGG 164
Query 173 GTATCCTCCTA--AGGAAGGATATCCTCCGGCTGGATATCCAC-CGCAAGGATATCCTCC 229
||||||||| | | | ||| |||||||| | |||||| | || |||||||||||
Sbjct 165 GTATCCTCC-ACCA-GCAGGTTATCCTCCACCACAATATCCTCAAGC-GGGATATCCTCC 221
Query 230 AGCAGGTTATCCCCCACCACCGCAAGGATACGGTCAAGGATATCCAGCACAAGGCTATCC 289
|||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 222 AGCAGGTTATCCTCCACCGCAGCAAGGATACGGTCAAGGATATCCAGCACAAGGCTATCC 281
Query 290 TCCACCGCAATATCCTCAAGGTCCTCCACCACAGTATCCTTATCAAGGTCCTCCACCGCC 349
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||
Sbjct 282 TCCACCGCAATATCCTCAAGGTCATCCACCACAATATCCTTATCAAGGTCCTCCACCACC 341
Query 350 GCATTATGGTCAGGCTCCACCTAAGAAGAAGAAAGACAAG--G-ATTCAGG---CTTCAT 403
||||||||||||||||||||| || || |||||||| ||| | ||||||| ||||||
Sbjct 342 GCATTATGGTCAGGCTCCACCGAAAAATAAGAAAGATAAGAAGGATTCAGGAGGCTTCAT 401
Query 404 GGAAGGATGTTTGGCTATGCTCTGCTGTTGCTGT-CTCTTGGAAGCTTGCTTTTGATCGG 462
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 402 GGAAGGATGTTTGGCTATGCTCTGCTGTTGC-GTTCTCTTGGAAGCTTGCTTTTGATCGG 460
Query 463 AGGATGAGCTGATATTTGCCGTTGACCGTCTCGAGGATGCCATTGTTGTATTTTGTCAAA 522
| ||||||||||||||||||||||||||||| |||||||| ||| |||||||||||
Sbjct 461 AAGATGAGCTGATATTTGCCGTTGACCGTCTTGAGGATGCTATTCA---ATTTTGTCAAA 517
Query 523 -ATGTTTAAAAGACGTGTTTGATCA-ACATTTTAGATCTCTTCTTCTGGTTGGTTATGTG 580
||||| |||||||||||||||| | ||||||||||||||||||||||||| |||||
Sbjct 518 CATGTTAAAAAGACGTGTTTGAT-ATACATTTTAGATCTCTTCTTCTGGTT----ATGTG 572
Query 581 TGTCCTGTCCACGTTTTGGGTTTGTTT 607
||||| |||||||||||||||||
Sbjct 573 TGTCC-----ACGTTTTGGGTTTGTTT 594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33305239461
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5