BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485345
Length=1259
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49850.1 | Symbols: TRB3, ATTRB3, TBP2 | telomere repeat bin... 1594 0.0
> AT3G49850.1 | Symbols: TRB3, ATTRB3, TBP2 | telomere repeat binding
factor 3 | chr3:18489034-18490996 FORWARD LENGTH=1384
Length=1384
Score = 1594 bits (863), Expect = 0.0
Identities = 1125/1243 (91%), Gaps = 52/1243 (4%)
Strand=Plus/Plus
Query 24 TTTCAAAATTTGATCCATGTCACTCTCCATAGCTTCCTCTCTCATTCTCTTCAGCGTTAT 83
||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||| || |
Sbjct 81 TTTCAAACTTTGATCCATGACACTCTCCATAGCTTCCTCTCTCATTCCCTTCAGCTTTCT 140
Query 84 CAGAGAATTGAAGTCGAGACATTAGAA------GTT-T-TGT-TGT-TGTGTTTCTGGAG 133
||||||||||||||||||||||||||| ||| | ||| ||| ||||||||| ||
Sbjct 141 CAGAGAATTGAAGTCGAGACATTAGAAGTGTTTGTTGTGTGTGTGTGTGTGTTTCTATAG 200
Query 134 AAGTTTTGAATTTTGTGATAAAATTGTGTCAATGGGAGCTCCAAAGCAAAAGTGGACACC 193
|| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 201 AATTTTTGAATTTTGTGATAAAATTGTGTGAATGGGAGCTCCAAAGCTGAAGTGGACACC 260
Query 194 AGAAGAAGAAACAGCTCTTAAAGCTGGAGTGCTTAAACATGGAACTGGAAAATGGCGTAC 253
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 261 AGAAGAAGAAACAGCTCTTAAAGCTGGAGTACTTAAACATGGAACTGGAAAATGGCGTAC 320
Query 254 CATTCTCTCAGATCCTGAGTATAGCTCAATTTTGAAGTCTCGTTCCAATGTGGATCTCAA 313
||||||||||||||||| ||||||| ||||| ||||||||||||| ||||||||||||||
Sbjct 321 CATTCTCTCAGATCCTGTGTATAGCACAATTCTGAAGTCTCGTTCTAATGTGGATCTCAA 380
Query 314 GGACAAATGGAGAAATATAAGTGTAACAGCTTTATGGGGATCTAGGAAGAAGGCTAAGCT 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 GGACAAATGGAGAAATATAAGTGTAACAGCTTTATGGGGATCTAGGAAGAAGGCTAAGCT 440
Query 374 AGCTCTTAAAAGAACTCCTTTGTTGGGTTCTAGGCAAGACGATAACGCTACAGCTATTAC 433
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 441 TGCTCTTAAAAGAACTCCTTTGTCGGGTAGTAGGCAAGACGATAACGCTACAGCTATTAC 500
Query 434 CATTGTGTCTTTAGCTAATGGTGATGGAGGAGGACAACAGATTTATGCACCATCTCCTCC 493
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 501 CATTGTGTCTTTAGCTAATGGTGATGTAGGAGGACAACAGATTGATGCACCATCTCCTCC 560
Query 494 TGCAGGTTCTTGTGAACCACCAAGACCTTCTACAAGTGTGGATAAGATTATACTGGAGGC 553
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 561 TGCAGGTTCTTGTGAACCTCCAAGACCTTCTACAAGTGTGGATAAGATTATATTGGAGGC 620
Query 554 CATTACCAACTTGAAGAGACCGTTTGGTCCTGACGGGAAGTCGATCTTGATGTATATAGA 613
||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 621 TATTACCAGCTTGAAGAGACCATTTGGTCCTGACGGAAAGTCGATCTTGATGTATATAGA 680
Query 614 GGAGAATTTCAAGATGCAACCAGATATGAAACGGCTTGTGACGTCAAGACTAAAGTATTT 673
||||||||||||||||||||| |||||||||||||||||||| ||||| || ||||||||
Sbjct 681 GGAGAATTTCAAGATGCAACCGGATATGAAACGGCTTGTGACTTCAAGGCTGAAGTATTT 740
Query 674 GACAAATGTTGGAACATTAGTTAAGAAAAAGCACAAATACAGGATTTCTCCGAATTACAT 733
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 741 GACAAATGTTGGAACATTAGTTAAGAAAAAGCACAAATACAGGATTTCTCAGAATTATAT 800
Query 734 GGCTGAAGCAGCAAG-ACAAAGGTCTCCTCAACTCTTATTGGAAGGAAACAAGGAAAATA 792
|||||||| || ||| ||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 801 GGCTGAAGGAG-AAGGACAAAGGTCTCCTCAACTCTTGTTGGAAGGAAACAAGGAAAACA 859
Query 793 CTCCGAAACCCGAGGAGAATGGCGTCAAAAATCTTA-TGA-T---AA-T-GG-G------ 838
|||||||||| ||||||||||||||||||||||||| | | | || | || |
Sbjct 860 CTCCGAAACCGGAGGAGAATGGCGTCAAAAATCTTACTAAATCCCAAGTAGGTGGAGAAG 919
Query 839 T-ATGACA--G---A--A-A-AA---GAAGCTGCTGCAGCCGCTGCAAGAGCCGTGgcag 885
| |||| | | | | | || |||||||||||||| ||||||||||| |||||||
Sbjct 920 TTATGATAATGGGTATGACAGAAAAAGAAGCTGCTGCAGCAGCTGCAAGAGCTGTGGCAG 979
Query 886 aagcagaattcgcaatcgcagaagctgaagaagcagcaagagaggcagatgaagcagaag 945
|||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 980 AAGCAGAATTTGCAATGGCAGAAGCTGAAGAAGCAGCAAGAGAGGCAGATAAAGCAGAAG 1039
Query 946 cCAAAGCTGAAGCTGCCCATATATTTGCAAAAGCGGCGATGAAATCTTTGAAGTATAGGA 1005
|| ||||||||||||||||||| ||||||||||||||||||||| || |||||||||| |
Sbjct 1040 CCGAAGCTGAAGCTGCCCATATTTTTGCAAAAGCGGCGATGAAAGCTGTGAAGTATAGAA 1099
Query 1006 TGCATAGCCAAACTCGGTAAGAATTAAGAAAAATCGTTGATGTTGTATCGGTTGATAT-T 1064
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
Sbjct 1100 TGCATAGCCAAACTCGGTAAGAATTAAGAAAA-TCATTGATGTTGTATCGGTTGATATAT 1158
Query 1065 AT-CG-TT-TTGATAT-ATCTTCATGT---GATCTT-CATCTAAAGCAATATTTTACAAT 1116
| | || || || | || | || || |||||| |||| ||| ||| ||||||||||
Sbjct 1159 CTTCAATTCTTCATGTTATGT-CAAGTTTCGATCTTGCATCGAAATCAACATTTTACAAT 1217
Query 1117 CGCTGCAGTGTTTTT-GTTCAGTAACAGTGTCTTCTAACTCAGATAATCATTTAAAACCT 1175
||| ||||||||||| || |||||||||||||||||||||||||| || || ||||||||
Sbjct 1218 CGCCGCAGTGTTTTTAGT-CAGTAACAGTGTCTTCTAACTCAGATGATTATGTAAAACCT 1276
Query 1176 GTTCCTTTTCTTGTTTCTGTTGATCTGGTTTTGTTAGTAACTT 1218
||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1277 GTTCCTTCTCTTGCTTCTGTTGATCTGGTTTTGTTAGTAACTT 1319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61897271985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5