BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485346
Length=604
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49860.1 | Symbols: ATARLA1B, ARLA1B | ADP-ribosylation fact... 671 0.0
AT3G49870.1 | Symbols: ATARLA1C, ARLA1C | ADP-ribosylation fact... 662 0.0
AT5G67560.1 | Symbols: ATARLA1D, ARLA1D | ADP-ribosylation fact... 440 7e-123
> AT3G49860.1 | Symbols: ATARLA1B, ARLA1B | ADP-ribosylation factor-like
A1B | chr3:18491122-18492177 REVERSE LENGTH=682
Length=682
Score = 671 bits (363), Expect = 0.0
Identities = 498/559 (89%), Gaps = 25/559 (4%)
Strand=Plus/Plus
Query 1 AAAGAAATGGAGATTTCTTTGATAGGACTTCAAAATGCAGGAAAGACATCACTTGTAAAT 60
|||||||||||| |||||||| |||||||||||||| ||||||||||||||||||| |||
Sbjct 40 AAAGAAATGGAGCTTTCTTTGGTAGGACTTCAAAATTCAGGAAAGACATCACTTGTTAAT 99
Query 61 GTTGTTGCAACTGATGAATACAGTGAAGACATGATTCCTACGGTCGGGTTTAACATGAGG 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 100 GTTGTTGCAACTGGTGAATACAGTGAAGACATGATTCCTACGGTCGGGTTTAACATGAGG 159
Query 121 AAAGTGACAAAAGAAAATGTTGCAATCAGGCTATGGGATCTTGGTGGTCAACCAAGATTC 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 160 AAAGTGACAAAAGAAAATGTTGCAATCAGACTATGGGATCTTGGTGGTCAACCAAGATTC 219
Query 181 CGCTTCATGTGGGTACATC-TTAGACTCAGGTTTCTTTGTTATCT-TTATTGCTCG-GCT 237
|||| |||||||| | | | || ||| || | |||| ||| | |||| | | |
Sbjct 220 CGCTGCATGTGGG-A-A-CGTT--ACT---GTCGCGCTGTT-TCTATGATTG-T-GTACG 268
Query 238 TA-TTCACAAT-CAGATCCTGACAACTTAAGTGTCTCGAGAAGTGAACTCCATGATTTGT 295
|| || | | ||||| |||| ||||| |||||||||||||||||||||||||||||||
Sbjct 269 TAGTTGATGCTGCAGATACTGAAAACTTGAGTGTCTCGAGAAGTGAACTCCATGATTTGT 328
Query 296 TGAGCAA-GACTTCGCTTAACGGTATCCCTCTTATGGTTCTTGGGAACAAGATTGACAAA 354
||||||| | ||||||||| ||||| |||||| |||||||||||||||||||||||| |
Sbjct 329 TGAGCAATG-CTTCGCTTATTGGTATTCCTCTTTTGGTTCTTGGGAACAAGATTGACATA 387
Query 355 CCTGGAGCTCTGTCCAAAGAAGCCTTGACAGAAGAAATGGGGCTTAGTTCGCTTACA-GA 413
| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 388 CATGGAGCTCTTTCCAAAGAAGCCTTGACAGAAGAAATGGGGCTTAGTTCGGTTACAAG- 446
Query 414 TAGAGAAGTCTGCTGTTTCATGATATCCTGCAAGAACCCTACCACCATTGATCAGGTCAT 473
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 447 TAGAGAAGTCTGCTGTCTCATGATATCCTGCAAGAACCCTACCACCATTGATCAGCTCAC 506
Query 474 TGATTGGGTCGTAAACCACTCAAAATCAAAGAACTAAACTTCACCAAGAACAT-ATAT-T 531
||||||| | ||||| ||||||||||||||||||||||||||| ||||||||| |||| |
Sbjct 507 TGATTGGCTTGTAAATCACTCAAAATCAAAGAACTAAACTTCAACAAGAACATCATATGT 566
Query 532 -CTCTCTTCTT-AGTCTTC 548
|||||||||| | |||||
Sbjct 567 TCTCTCTTCTTGA-TCTTC 584
> AT3G49870.1 | Symbols: ATARLA1C, ARLA1C | ADP-ribosylation factor-like
A1C | chr3:18492408-18494139 REVERSE LENGTH=939
Length=939
Score = 662 bits (358), Expect = 0.0
Identities = 491/553 (89%), Gaps = 17/553 (3%)
Strand=Plus/Plus
Query 2 AAGAAATGGAGATTTCTTTGATAGGACTTCAAAATGCAGGAAAGACATCACTTGTAAATG 61
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 AAGAAATGGAGCTTTCTTTGATAGGACTTCAAAATGCAGGAAAGACATCACTTGTAAATG 230
Query 62 TTGTTGCAACTGATGAATACAGTGAAGACATGATTCCTACGGTCGGGTTTAACATGAGGA 121
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 TTGTTGCAACTGGTGGATACAGTGAAGACATGATTCCTACGGTCGGGTTTAACATGAGGA 290
Query 122 AAGTGACAAAAGAAAATGTTGCAATCAGGCTATGGGATCTTGGTGGTCAACCAAGATTCC 181
|||| ||||||| ||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 291 AAGTAACAAAAGGAAATGTTACAATCAAACTATGGGATCTTGGTGGTCAACCAAGATTCC 350
Query 182 GCTTCATGTGGGTACATC-TTAGACTCAGGTTTCTTTGTTATCT-TTATTGCTCGGCT-T 238
|| |||||||| | | | || ||| || | |||| ||| |||| | | | |
Sbjct 351 GCAGCATGTGGG-A-A-CGTT--ACT---GTCGCGCTGTT-TCTGCCATTG-T-GTATGT 399
Query 239 A-TTCACAAT-CAGATCCTGACAACTTAAGTGTCTCGAGAAGTGAACTCCATGATTTGTT 296
| || | | |||||||||||||| ||||||| |||| |||||||||||||||||||||
Sbjct 400 AGTTGATGCTGCAGATCCTGACAACCTAAGTGTGTCGAAAAGTGAACTCCATGATTTGTT 459
Query 297 GAGCAAGACTTCGCTTAACGGTATCCCTCTTATGGTTCTTGGGAACAAGATTGACAAACC 356
|||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||
Sbjct 460 GAGCAAGACTTCGCTTAATGGTATCCCTCTTCTCGTTCTTGGGAACAAGATTGACAAACC 519
Query 357 TGGAGCTCTGTCCAAAGAAGCCTTGACAGAAGAAATGGGGCTTAGTTCGCTTACAGATAG 416
|||||||||||||||||||||||| ||||| |||||||| |||| || |||||||||||
Sbjct 520 TGGAGCTCTGTCCAAAGAAGCCTTAACAGACGAAATGGGACTTACATCACTTACAGATAG 579
Query 417 AGAAGTCTGCTGTTTCATGATATCCTGCAAGAACCCTACCACCATTGATCAGGTCATTGA 476
|||||||||||||||||||||||| ||||||||| |||||| ||||||||| ||||||||
Sbjct 580 AGAAGTCTGCTGTTTCATGATATCATGCAAGAACTCTACCAACATTGATCAAGTCATTGA 639
Query 477 TTGGGTCGTAAACCACTCAAAATCAAAGAACTAAACTTCACCAAGAACATATATTCTCTC 536
|||| ||||||| || ||||| || ||||||||| |||||||||||||||||||||||||
Sbjct 640 TTGGCTCGTAAAGCATTCAAAGTCGAAGAACTAATCTTCACCAAGAACATATATTCTCTC 699
Query 537 TTCTT-AGTCTTC 548
||||| | |||||
Sbjct 700 TTCTTGATTCTTC 712
> AT5G67560.1 | Symbols: ATARLA1D, ARLA1D | ADP-ribosylation factor-like
A1D | chr5:26950309-26952211 FORWARD LENGTH=1123
Length=1123
Score = 440 bits (238), Expect = 7e-123
Identities = 434/526 (83%), Gaps = 24/526 (5%)
Strand=Plus/Plus
Query 2 AAGAAATGGAGATTTCTTTGATAGGACTTCAAAATGCAGGAAAGACATCACTTGTAAATG 61
||||||||||| |||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 323 AAGAAATGGAGCTTTCATTGATAGGACTTCAAAATGCAGGAAAGACATCACTTGTTAACG 382
Query 62 TTGTTGCAACTGATGAATACAGTGAAGACATGATTCCTACGGTCGGGTTT-AACATGAGG 120
|||||||||| | || |||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 383 TTGTTGCAACCGGTGGATACAGTGAAGACATGATCCCTACGGT-TGGTTTCAACATGAGG 441
Query 121 AAAGTGACAAAAGAAAATGTTGCAATCAGGCTATGGGATCTTGGTGGTCAACCAAGATTC 180
||||||||||||| || ||| | |||| ||| |||||||| ||||||||||| || |||
Sbjct 442 AAAGTGACAAAAGGAAGTGTCACGATCAAGCTTTGGGATCTCGGTGGTCAACCTAGGTTC 501
Query 181 CGCTTCATGTGGGTACATC-TTAGACT-CAGGTTTCTTTGTTAT-CTTTATTGCTCGGCT 237
||| |||||||| | | | || ||| | | ||| |||| | | |||| | | |
Sbjct 502 CGCAGCATGTGGG-A-A-CGTT--ACTGC-CG-TTC--TGTT-TCCGCGATTG-T-GTAT 549
Query 238 -TA-TTCACAAT-CAGATCCTGACAACTTAAGTGTCTCG-AGAAGTGAACTCCATGATTT 293
|| || | | | |||||||| ||| | ||||||||| || |||||||||||||||||
Sbjct 550 GTAGTTGATGCTGCTGATCCTGATAACCTCAGTGTCTCGAAG-AGTGAACTCCATGATTT 608
Query 294 GTTGAGCAAGACTTCGCTTAACGGTATCCCTCTTATGGTTCTTGGGAACAAGATTGACAA 353
|||||||||||| |||||||| ||||||||||| | || ||||||||||| || |||||
Sbjct 609 GTTGAGCAAGACGTCGCTTAATGGTATCCCTCTCCTAGTCCTTGGGAACAAAATCGACAA 668
Query 354 ACCTGGAGCTCTGTCCAAAGAAGCCTTGACAGAAGAAATGGGGCTTA-GTTCGCTTACAG 412
||||||||| |||||||||||||| | || || |||||||| || | || | || ||||
Sbjct 669 GCCTGGAGCTTTGTCCAAAGAAGCCCTAACCGATGAAATGGGTCTCAAGT-CACTGACAG 727
Query 413 ATAGAGAAGTCTGCTGTTTCATGATATCCTGCAAGAACCCTACCACCATTGATCAGGTCA 472
||||||||||||| || ||||||||||| ||||||||| |||||| ||| ||||| ||||
Sbjct 728 ATAGAGAAGTCTGTTGCTTCATGATATCTTGCAAGAACTCTACCAACATCGATCAAGTCA 787
Query 473 TTGATTGGGTCGTAAACCACTCAAAATCAAAGAACTAAACTTCACC 518
|||||||| | ||||| ||||| |||||| ||| ||||||| |||
Sbjct 788 TTGATTGGCTTGTAAAGCACTCCAAATCATCGAATTAAACTTTACC 833
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29085571113
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5