BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485347
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49870.1 | Symbols: ATARLA1C, ARLA1C | ADP-ribosylation fact... 1284 0.0
AT3G49860.1 | Symbols: ATARLA1B, ARLA1B | ADP-ribosylation fact... 793 0.0
AT5G67560.1 | Symbols: ATARLA1D, ARLA1D | ADP-ribosylation fact... 708 0.0
> AT3G49870.1 | Symbols: ATARLA1C, ARLA1C | ADP-ribosylation factor-like
A1C | chr3:18492408-18494139 REVERSE LENGTH=939
Length=939
Score = 1284 bits (695), Expect = 0.0
Identities = 810/862 (94%), Gaps = 21/862 (2%)
Strand=Plus/Plus
Query 1 CAGGCGGATCTGTTTGTCGGAGCTTTTGT---TCATCATCATCAATGGGTTTGTGGGAAG 57
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 75 CAGGCGGATCTGTTTGTCGGAGCTTTTGTGAATCATCATCATCAATGGGTTTGTTGGAAG 134
Query 58 CTTTTCTCAATTGGCTTCGTAGCCTCTTCTTCAAGCAAGAAATGGAGCTATCTTTGATAG 117
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 135 CTTTTCTCAATTGGCTTCGTAGCCTCTTCTTCAAGCAAGAAATGGAGCTTTCTTTGATAG 194
Query 118 GACTCCAAAATGCAGGAAAGACATCACTTGTAAATGTTGTTGCAACTGGTGGATACAGTG 177
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 GACTTCAAAATGCAGGAAAGACATCACTTGTAAATGTTGTTGCAACTGGTGGATACAGTG 254
Query 178 AAGACATGATTCCCACGGTCGGGTTTAACATGAGGAAAGTAACAAAAGGAAATGTTACAA 237
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 AAGACATGATTCCTACGGTCGGGTTTAACATGAGGAAAGTAACAAAAGGAAATGTTACAA 314
Query 238 TCAAACTATGGGATCTTGGTGGTCAACCAAGATTCCGCAGCATGTGGGAACGTTACTGTC 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 TCAAACTATGGGATCTTGGTGGTCAACCAAGATTCCGCAGCATGTGGGAACGTTACTGTC 374
Query 298 GCGCTGTTTCTGCCATTGTGTATGTAGTTGATGCTGCAGATCCTGACAACCTCAGTGTCT 357
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 375 GCGCTGTTTCTGCCATTGTGTATGTAGTTGATGCTGCAGATCCTGACAACCTAAGTGTGT 434
Query 358 CGAAAAGTGAACTCCATGATCTGTTGAGCAAGACTTCGCTTAATGGTATCCCTCTTCTGG 417
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 435 CGAAAAGTGAACTCCATGATTTGTTGAGCAAGACTTCGCTTAATGGTATCCCTCTTCTCG 494
Query 418 TTCTTGGGAACAAGATTGACAAACCTGGAGCTCTGTCCAAAGAAGCCTTAACAGACGAAA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 TTCTTGGGAACAAGATTGACAAACCTGGAGCTCTGTCCAAAGAAGCCTTAACAGACGAAA 554
Query 478 TGGGGCTTACGTCTCTTACAGATAGAGAAGTCTGTTGTTTCATGATATCCTGCAAAAACT 537
|||| ||||| || |||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 555 TGGGACTTACATCACTTACAGATAGAGAAGTCTGCTGTTTCATGATATCATGCAAGAACT 614
Query 538 CTACAAACATTGATCAAGTCATTGATTGGCTCGTAAAGCATTCAAAATCAAAGAACTAAA 597
|||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 615 CTACCAACATTGATCAAGTCATTGATTGGCTCGTAAAGCATTCAAAGTCGAAGAACTAAT 674
Query 598 CTTCACCAAGAACATATTATTCTCTCTTCTTGAT-CTTCTTAGTCTTCCTGTATTGTCTG 656
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 675 CTTCACCAAGAACATAT-ATTCTCTCTTCTTGATTCTTCTTAGTCTTCCTGTATTGTCTA 733
Query 657 GTTGATGATGATGGTGATTGTTGAAGACAATTTTTTCGTGTGAATCAAGAGTTTGTCTTT 716
||||||||||||||||| |||||||| |||||||| ||||||| ||||||
Sbjct 734 GTTGATGATGATGGTGA----------CAATTTTT-CGTGTGAAACAAGAGT--GTCTTT 780
Query 717 ATTTGTCGTCTTCTGTCTCTCCTTCTCCTGCTGGTCTGGTCTTGTTTGGACC---AGTAT 773
|||| ||| |||| |||||||||||| |||||||||||||||||||||| || ||| |
Sbjct 781 ATTTTTCGCCTTCCGTCTCTCCTTCTTCTGCTGGTCTGGTCTTGTTTGGTCCTCCAGTCT 840
Query 774 TGTCTTTGTATATTAGATGTGGATTGTTTTTCTATTCCCAAGGCTTTGCAATTTTGGAAA 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 841 TGTCTTTGTATATTAGATGTGGATTGTTTTTCTATTCCCAAGGCTTTGCAATTTTTGAAA 900
Query 834 CACATTAACGTAAGTGTCTCAA 855
|||| ||| |||||||| |||
Sbjct 901 CACAAAAACATAAGTGTCCCAA 922
> AT3G49860.1 | Symbols: ATARLA1B, ARLA1B | ADP-ribosylation factor-like
A1B | chr3:18491122-18492177 REVERSE LENGTH=682
Length=682
Score = 793 bits (429), Expect = 0.0
Identities = 604/686 (88%), Gaps = 22/686 (3%)
Strand=Plus/Plus
Query 64 TCAAT-TGGCTTCGTAGCCTCTTCTTCAAGC--AAGAAATGGAGCTATCTTTGATAGGAC 120
||||| || ||| | ||||| ||||||||| ||||||||||||| |||||| ||||||
Sbjct 8 TCAATATGACTTTGCAGCCTAATCTTCAAGCAAAAGAAATGGAGCTTTCTTTGGTAGGAC 67
Query 121 TCCAAAATGCAGGAAAGACATCACTTGTAAATGTTGTTGCAACTGGTGGATACAGTGAAG 180
| |||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 68 TTCAAAATTCAGGAAAGACATCACTTGTTAATGTTGTTGCAACTGGTGAATACAGTGAAG 127
Query 181 ACATGATTCCCACGGTCGGGTTTAACATGAGGAAAGTAACAAAAGGAAATGTTACAATCA 240
|||||||||| |||||||||||||||||||||||||| ||||||| ||||||| ||||||
Sbjct 128 ACATGATTCCTACGGTCGGGTTTAACATGAGGAAAGTGACAAAAGAAAATGTTGCAATCA 187
Query 241 AACTATGGGATCTTGGTGGTCAACCAAGATTCCGCAGCATGTGGGAACGTTACTGTCGCG 300
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 188 GACTATGGGATCTTGGTGGTCAACCAAGATTCCGCTGCATGTGGGAACGTTACTGTCGCG 247
Query 301 CTGTTTCTGCCATTGTGTATGTAGTTGATGCTGCAGATCCTGACAACCTCAGTGTCTCGA 360
|||||||| |||||||| |||||||||||||||||| |||| ||| | ||||||||||
Sbjct 248 CTGTTTCTATGATTGTGTACGTAGTTGATGCTGCAGATACTGAAAACTTGAGTGTCTCGA 307
Query 361 AAAGTGAACTCCATGATCTGTTGAGCAA-GACTTCGCTTAATGGTATCCCTCTTCTGGTT 419
|||||||||||||||| |||||||||| | ||||||||| |||||| |||||| |||||
Sbjct 308 GAAGTGAACTCCATGATTTGTTGAGCAATG-CTTCGCTTATTGGTATTCCTCTTTTGGTT 366
Query 420 CTTGGGAACAAGATTGACAAACCTGGAGCTCTGTCCAAAGAAGCCTTAACAGACGAAATG 479
||||||||||||||||||| || ||||||||| |||||||||||||| ||||| ||||||
Sbjct 367 CTTGGGAACAAGATTGACATACATGGAGCTCTTTCCAAAGAAGCCTTGACAGAAGAAATG 426
Query 480 GGGCTTACGTCTC--TTACA-GATAGAGAAGTCTGTTGTTTCATGATATCCTGCAAAAAC 536
||||||| || || ||||| | |||||||||||| ||| |||||||||||||||| |||
Sbjct 427 GGGCTTA-GT-TCGGTTACAAG-TAGAGAAGTCTGCTGTCTCATGATATCCTGCAAGAAC 483
Query 537 TCTACAAACATTGATCAAG-TCATTGATTGGCTCGTAAAGCATTCAAAATCAAAGAACTA 595
|||| | ||||||||| | ||| ||||||||| ||||| || |||||||||||||||||
Sbjct 484 CCTACCACCATTGATCA-GCTCACTGATTGGCTTGTAAATCACTCAAAATCAAAGAACTA 542
Query 596 AACTTCACCAAGAACAT-AT-TATTCTCTCTTCTTGATCTTCTTAGTCTTCCTGTATTGT 653
||||||| ||||||||| || | |||||||||||||||||||||| || |||| | ||||
Sbjct 543 AACTTCAACAAGAACATCATATGTTCTCTCTTCTTGATCTTCTTACTCGTCCTCTGTTGT 602
Query 654 CTGGTTGATGATGATGGTGATTGTTGAAGACAATTTTTTCGTGTGAATCAAGAGTTTGTC 713
|||||| ||||||||| ||| | ||||| ||||| || ||||| ||||||||||||
Sbjct 603 CTGGTTAATGATGATGATGAGTCTTGAACT-AATTT---CGCGTGAAACAAGAGTTTGTC 658
Query 714 TTTATTTGTCGTCTTCTGTCTCTCCT 739
|||||||||| | | ||||||| |||
Sbjct 659 TTTATTTGTC-T-T-CTGTCTCACCT 681
> AT5G67560.1 | Symbols: ATARLA1D, ARLA1D | ADP-ribosylation factor-like
A1D | chr5:26950309-26952211 FORWARD LENGTH=1123
Length=1123
Score = 708 bits (383), Expect = 0.0
Identities = 505/565 (89%), Gaps = 4/565 (1%)
Strand=Plus/Plus
Query 42 ATGGGTTTGTGGGAAGCTTTTCTCAATTGGCTTCGTAGCCTCTTCTTCAAGCAAGAAATG 101
|||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 271 ATGGGTTTGTGGGATGCTCTTCTCAATTGGCTTCGCAGCCTCTTCTTCAAGCAAGAAATG 330
Query 102 GAGCTATCTTTGATAGGACTCCAAAATGCAGGAAAGACATCACTTGTAAATGTTGTTGCA 161
||||| || ||||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 331 GAGCTTTCATTGATAGGACTTCAAAATGCAGGAAAGACATCACTTGTTAACGTTGTTGCA 390
Query 162 ACTGGTGGATACAGTGAAGACATGATTCCC-ACGGTCGGGTTT-AACATGAGGAAAGTAA 219
|| ||||||||||||||||||||||| ||| ||||| || ||| |||||||||||||| |
Sbjct 391 ACCGGTGGATACAGTGAAGACATGAT-CCCTACGGTTGG-TTTCAACATGAGGAAAGTGA 448
Query 220 CAAAAGGAAATGTTACAATCAAACTATGGGATCTTGGTGGTCAACCAAGATTCCGCAGCA 279
||||||||| ||| || ||||| || |||||||| ||||||||||| || ||||||||||
Sbjct 449 CAAAAGGAAGTGTCACGATCAAGCTTTGGGATCTCGGTGGTCAACCTAGGTTCCGCAGCA 508
Query 280 TGTGGGAACGTTACTGTCGCGCTGTTTCTGCCATTGTGTATGTAGTTGATGCTGCAGATC 339
|||||||||||||||| || ||||||| || ||||||||||||||||||||||| ||||
Sbjct 509 TGTGGGAACGTTACTGCCGTTCTGTTTCCGCGATTGTGTATGTAGTTGATGCTGCTGATC 568
Query 340 CTGACAACCTCAGTGTCTCGAAAAGTGAACTCCATGATCTGTTGAGCAAGACTTCGCTTA 399
|||| ||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||
Sbjct 569 CTGATAACCTCAGTGTCTCGAAGAGTGAACTCCATGATTTGTTGAGCAAGACGTCGCTTA 628
Query 400 ATGGTATCCCTCTTCTGGTTCTTGGGAACAAGATTGACAAACCTGGAGCTCTGTCCAAAG 459
||||||||||||| || || ||||||||||| || ||||| ||||||||| |||||||||
Sbjct 629 ATGGTATCCCTCTCCTAGTCCTTGGGAACAAAATCGACAAGCCTGGAGCTTTGTCCAAAG 688
Query 460 AAGCCTTAACAGACGAAATGGGGCTTACGTCTCTTACAGATAGAGAAGTCTGTTGTTTCA 519
||||| |||| || |||||||| || | ||| || |||||||||||||||||||| ||||
Sbjct 689 AAGCCCTAACCGATGAAATGGGTCTCAAGTCACTGACAGATAGAGAAGTCTGTTGCTTCA 748
Query 520 TGATATCCTGCAAAAACTCTACAAACATTGATCAAGTCATTGATTGGCTCGTAAAGCATT 579
||||||| ||||| |||||||| ||||| |||||||||||||||||||| |||||||| |
Sbjct 749 TGATATCTTGCAAGAACTCTACCAACATCGATCAAGTCATTGATTGGCTTGTAAAGCACT 808
Query 580 CAAAATCAAAGAACTAAACTTCACC 604
| |||||| ||| ||||||| |||
Sbjct 809 CCAAATCATCGAATTAAACTTTACC 833
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41694342010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5