BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485350
Length=1536
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49900.2 | Symbols: | Phototropic-responsive NPH3 family pr... 2196 0.0
AT3G49890.1 | Symbols: | unknown protein; Has 27 Blast hits to... 147 4e-34
> AT3G49900.2 | Symbols: | Phototropic-responsive NPH3 family
protein | chr3:18500575-18502725 REVERSE LENGTH=1734
Length=1734
Score = 2196 bits (1189), Expect = 0.0
Identities = 1444/1564 (92%), Gaps = 29/1564 (2%)
Strand=Plus/Plus
Query 1 ATGAAGCGATGGACAAACTTAGGGTTTGTTGATACGATTTATGAAGACGAAGACTACGTA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 ATGAAGCGATGGACAAACTTAGGGTTTGTTGATACGATTTATGAAGACGAAGACTACGTA 171
Query 61 G---ATCACtcttcttctttatcttcttcttcttcatctttgtctccttctccgaaacaa 117
| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 172 GATCATCACTCTTCTTCTTTATCTTCTTCTTCTTCATCTTTGTCTCTTTCTCCTAAACAA 231
Query 118 cgtatcaatctctcttcttctccttcAATGGAGCTTGAATCTCGAGTCCATAAATGGTCG 177
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 CCTATCAATCTCTCTTCTTCTCCTTCAATGGAGCTTGAATCTCGAGTCCATAAATGGTCG 291
Query 178 TTGGCTAATAACTCTAAACCTGATGTGTTCGTAAATGTGGGAGGCACAAGGTTCCATCTT 237
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 292 TTGGCTAATAACTCTAAACCTGATGTATTCGTAAATGTGGGAGGCACAAGGTTCCATCTT 351
Query 238 CACAAGGATCCTCTGTCAAAGAGTGGCTATTTAAAACGCTACCTAACGGGCGTTAACGAA 297
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 352 CACAAGGATCCTCTGTCAAAGAGTGGCTATTTAAAACGCCACCTAACGGGCGTTAACGAA 411
Query 298 TTAACTCTCTCACCGCCGTTAAATATAACGGCTGAAACGTTTTCGTTAGTTGCCGGTTTC 357
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 412 TTAACTCTCTCACCGCCGTTAAACATAACGGCTGAAACGTTTTCGTTAGTTGCCGGTTTC 471
Query 358 TGTTACGGCGCTCACATTGAGTTAACGCCGTTCAATGTTGTTTCGTTGAGAATCGCCGTC 417
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 472 TGTTACGGCGCTCACATTGAGTTAACGCCGTCCAATGTCGTTTCGTTGAGAATCGCCGTG 531
Query 418 GAGATTCTTCTCATGACGGAAGCTGACGACGGAGGAAGAG--AGAGC---CT-GAGGAAC 471
||| ||||||| || ||||||||||||||||||||||||| |||| || |||||||
Sbjct 532 GAGGTTCTTCTGATTACGGAAGCTGACGACGGAGGAAGAGTTAGAGATAGCTTGAGGAAC 591
Query 472 TTGACGGAGTCTTATCTCCGACGAGTCGTCTTCGTCAGCGTTGACTATACCCAGATCGTT 531
||||||||||||||||||||||||||||||||||| | |||||| || | |||||||||
Sbjct 592 TTGACGGAGTCTTATCTCCGACGAGTCGTCTTCGTAAACGTTGATTACATTCAGATCGTT 651
Query 532 CTCCGTTCGTGCCTTCTTCTGCTTCCGGAGTCTGAAACGACGGCGTTTCTTATCGGACGA 591
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 652 CTCCGTTCGTGCCTTCTTCTTCTTCCGGAGTCTGAAACGACGGCGTTTCTGATCGGACGT 711
Query 592 TGCGTAGAAGCTTTGATGGAAATTGGAGACGGTGACTGCGTTAACGAGTTTCTAGAGGAA 651
|| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 712 TGTGTAGAAGCTTTGATGGAAATCGGAGACGGTGATTGCGTTAACGAGTTTCTAGAAGAA 771
Query 652 GCTGTTAGGCTTCCCGCCGGCGATTTTAGCGTCGTCGCCGACGCCGTGCAACAGCGGTTC 711
||||||| ||||||||||||||||||| ||||||||| ||||||||||| |||||||||
Sbjct 772 GCTGTTAAACTTCCCGCCGGCGATTTTAACGTCGTCGCTGACGCCGTGCAGCAGCGGTTC 831
Query 712 CCGCGTCACGATTTGCTTTATAGAATCGTTGATGCTTATGTGAAGG-A----G----CAT 762
|||||||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct 832 CCGCGTCACGATTTGCTTTATAGAATCGTTGATGCTTATGTGAAGGTAAAAAGGGAACAT 891
Query 763 GACGGAGAGATAACGGAGGAAGAGAAGGTTCAGATATGTAATTCGATAGACTGTGACAAA 822
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 GACGGAGAGATGACGGAGGAAGAGAAGGTTCAGATATGTAATTCGATAGACTGTGACAAA 951
Query 823 CTCTCGCCGCCGTTACTACTTCACGCTGTTCAAAACCCGAAAATGCCCCTGAGGTTTATA 882
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 CTCTCGCCCCCTTTACTACTTCACGCTGTTCAAAACCCGAAAATGCCCCTGAGGTTTATA 1011
Query 883 GTTCGCGCGATGCTACAAGAGCAGCTCAACACTCGCCACTCGATCATGGCAGCTGCAGCC 942
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1012 GTTCGGGCGATGCTACAAGAGCAGCTCAACACTCGCCACTCGATCATGGTAGCTGCTGTT 1071
Query 943 G-T-CG-CTTCCGCTGCTCCGGTTGGAGACCGACACCGGGATATTGCTGCAGCGGCGAGA 999
| | || | | ||| ||||| ||| | |||||| | || ||||| ||| |||||||
Sbjct 1072 GCTGCGTCCTGCGCGGCTCCTACTGGTGTTCGACACAGAGAGATTGCCACAGAGGCGAGA 1131
Query 1000 GACTCCTCCGTTACGCTTGGATCGCTTCTCCAGCGAGACACCGCGGCGCGGCAAAACTGT 1059
||||||||||| |||||||||||||| ||||||||||| || |||||| |||||||||||
Sbjct 1132 GACTCCTCCGTGACGCTTGGATCGCTCCTCCAGCGAGATACGGCGGCGAGGCAAAACTGT 1191
Query 1060 CGGCTCAGAGCTGCGATGAATTCCACAAGCTCGAGGATTGAGAGCTTGGAGAAAGAGCTA 1119
||||| ||||||||||||||||||||||||||||||||||| ||| | |||||||||||
Sbjct 1192 CGGCTAAGAGCTGCGATGAATTCCACAAGCTCGAGGATTGAAAGCCTAGAGAAAGAGCTC 1251
Query 1120 GACGCGATGAAGAAATTCTTATCGAAAGAATCGGAGAAGCAGAAATCAGACCGTA-TCAT 1178
||| | ||||||| |||| ||||||||||||| |||||||||||||| ||||| | | ||
Sbjct 1252 GACACAATGAAGAGATTCCTATCGAAAGAATCAGAGAAGCAGAAATCGGACCGGAAT-AT 1310
Query 1179 CATCGATTCGAGGTCAAGAAGTGTGATGGATTCCGCTCGATCCGCGAGTTTCCATTGCAT 1238
| | || |||||||||||||| ||||||||||| |||||||||||||||||||||||| |
Sbjct 1311 CGTGGAGTCGAGGTCAAGAAGCGTGATGGATTCTGCTCGATCCGCGAGTTTCCATTGCGT 1370
Query 1239 TCACCAACCGAGTAACTTAAATAAGACGCAGAGAGGCGATAGAGGTTCTGTTTCAAACCT 1298
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1371 TCACCAACCGAGTAACGTAAACAAGACGCAGAGAGGCGATAGAGGTTCTGTTTCAAACCT 1430
Query 1299 GAGCACGACTTTCCAGCGAAGAAGAGCATCTCCACC----GCA-A-CCGCAGAAAAGTAT 1352
|||||| |||| || ||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 1431 GAGCACAACTTACCGGCGAAGAAGAGCATCTCCACCACAAGCACAACCGCAGAAAAGTAT 1490
Query 1353 CGGGAAAAGACTGATTAAGGGAATAAAGAACGCTTTCTCTACATCATCCAAACAAGTACC 1412
||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1491 CGGAAAAAGACTGATTATGGGAATAAAGAATGCTTTCTCTACATCATCCAAACAAGTACC 1550
Query 1413 CAAGAAAAATGCATACGCAGTCGAGGAGATATATGATGGATTAGAAGATTTCGTCTGGAT 1472
||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 1551 CAAGAAAAATGCATATGCAGTAGAGGAGATTTATGATGGATTAGAAGACTTCGTCTGGAT 1610
Query 1473 CAAAGACGACGATGATGACAACATCTCTGAAGAACTTCACTCTCACTACATCAAGAACAA 1532
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1611 CAAAGACGACAATGATGACAACATCTCTGAAGAACTTCACTCTCACTACATTAAGAACAA 1670
Query 1533 ATAA 1536
||||
Sbjct 1671 ATAA 1674
> AT3G49890.1 | Symbols: | unknown protein; Has 27 Blast hits
to 27 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa
- 3; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes
- 3 (source: NCBI BLink). | chr3:18499170-18500722 FORWARD
LENGTH=1010
Length=1010
Score = 147 bits (79), Expect = 4e-34
Identities = 85/88 (97%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 1449 TGGATTAGAAGATTTCGTCTGGATCAAAGACGACGATGATGACAACATCTCTGAAGAACT 1508
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1010 TGGATTAGAAGACTTCGTCTGGATCAAAGACGACAATGATGACAACATCTCTGAAGAACT 951
Query 1509 TCACTCTCACTACATCAAGAACAAATAA 1536
||||||||||||||| ||||||||||||
Sbjct 950 TCACTCTCACTACATTAAGAACAAATAA 923
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75802822950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5