BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485352
Length=665
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49930.1 | Symbols: | C2H2 and C2HC zinc fingers superfamil... 828 0.0
> AT3G49930.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily
protein | chr3:18510246-18510963 FORWARD LENGTH=718
Length=718
Score = 828 bits (448), Expect = 0.0
Identities = 594/657 (90%), Gaps = 39/657 (6%)
Strand=Plus/Plus
Query 1 ATGGCTCTCGAGACTCTCAATTctcccacctccaccaccaccaccaccgctcctcctcct 60
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGCTCTCGACACTCTCAATTCTCCCACCTCCACCACCACAACCACCGCTCCTCCTCCT 60
Query 61 ttcctccacTGCCTCGATGAAACCGAATCCGAAAACCTCGAATCATGGACCAAAAGAAAA 120
||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 TTCCTCCGTTGCCTCGACGAAACCGAGCCCGAAAACCTCGAATCATGGACCAAAAGAAAA 120
Query 121 CGTACAAAACGTCACCGTATAGATCAACCAAA--C-CCTCCTTCTGAAGAAGAGTATCTA 177
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 121 CGTACAAAACGTCACCGTATAGATCAACCAAACCCTCCTCCTTCTGAAGAAGAGTATCTC 180
Query 178 GCTCTTTGCCTCCTTATGCTCGCTCGTGGCTCCTCCG---ATCA---T-CA-C-TC---T 225
||||||||||||||||||||||||||||||||||||| |||| | || | || |
Sbjct 181 GCTCTTTGCCTCCTTATGCTCGCTCGTGGCTCCTCCGATCATCACTCTCCACCGTCGGAT 240
Query 226 --TCA-----------C-C-GTCCGATCATCAGAAAGATTACAAGTGTTCCGTCTGTGGC 270
||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CATCACTCTCTTTCTCCACTGTCCGATCATCAGAAAGATTACAAGTGTTCCGTCTGTGGC 300
Query 271 AAATCTTTCCCGTCTTATCAAGCGTTAGGTGGACACAAAACAAGTCACCGGAAACCGGTT 330
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAATCTTTCCCGTCTTACCAAGCGTTAGGTGGACACAAAACAAGTCACCGGAAACCGGTT 360
Query 331 AGTATTAATAACGACGATGCTAATAATAGTAACGGTTCCGTTACTAATAACGGAAATATT 390
|| | | ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 361 AG------T---GTCGATGTTAATAATAGTAACGGAACCGTTACTAATAACGGAAATATT 411
Query 391 AGTAACGGTTTAGTTGGTCAAAGTGGGAAGACTCATAACTGCTCTATATGTTTCAAGTCG 450
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 412 AGTAACGGTTTAGTTGGTCAAAGTGGGAAGACTCATAACTGCTCTATATGTTTTAAGTCG 471
Query 451 TTTCCCTCTGGTCAAGCATTGGGTGGTCACAAACGGTGTCACTATGACGGTGGTAACGGT 510
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 472 TTTCCCTCTGGTCAAGCATTGGGTGGTCACAAACGTTGTCACTATGATGGTGGTAACGGT 531
Query 511 AACGGTAACGGTGATAATAGCCACAGGTTTGACCTGAATTTACCAGCTGATCAAGTTAGT 570
||| |||||||||| |||||||||| ||||||||| |||||||| |||||||||||||||
Sbjct 532 AACAGTAACGGTGACAATAGCCACAAGTTTGACCTAAATTTACCGGCTGATCAAGTTAGT 591
Query 571 GATGAGACACTTGGAAAAAGTCAACTCTCCGGCGAAGAAACCAAGTCGGTGTTGTGA 627
||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 592 GATGAGACAATTGGAAAAAGTCAACTCTCCGGTGAAGAAACAAAGTCGGTGTTGTGA 648
Score = 65.8 bits (35), Expect = 5e-10
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 628 AGTGATTGATCATTAGCTGAGTCTGTAATGAAAATGAT 665
|||| |||||||||||||||||||||||||||||||||
Sbjct 681 AGTGGTTGATCATTAGCTGAGTCTGTAATGAAAATGAT 718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32149854080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5