BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485357
Length=1673
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49990.1 | Symbols: | unknown protein; Has 1524 Blast hits ... 2429 0.0
> AT3G49990.1 | Symbols: | unknown protein; Has 1524 Blast hits
to 1298 proteins in 225 species: Archae - 9; Bacteria - 84;
Metazoa - 474; Fungi - 184; Plants - 98; Viruses - 17; Other
Eukaryotes - 658 (source: NCBI BLink). | chr3:18532323-18534274
REVERSE LENGTH=1762
Length=1762
Score = 2429 bits (1315), Expect = 0.0
Identities = 1574/1694 (93%), Gaps = 38/1694 (2%)
Strand=Plus/Plus
Query 1 ATGGGGAAGAAGAAGTTTATTGATAAGAAAAAGGCGGCGACTTTCGAGTTGTGTCCTCGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 85 ATGGGGAAGAAGAAGTTTATTGATAAGAAAAAGGCGGCGACTTTCGAGTTGTGTCCTCGT 144
Query 61 GATACGTCTGACCCAAGATACAGTGATGCACCAGGTGGTGATAAGATCTTCTTACGAGTT 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 145 GATACGTCAGACCCAAGATACAGTGATGCACCAGGTGGTGATAAGATCTTCTTACGAGTT 204
Query 121 GATCAAAACCCTGTTAACATCAATGGTTTCATCgaagaagaagatgaagaagaagaagaa 180
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 205 GATCAAAACCCTGTTAACATCAATGGTTTCAT---TGAAGAAGAT---GAAGAAGAAGAA 258
Query 181 gGAGACAGTTCACGGTTTGAAGATGCTCCTGAAGAGTTGGATTATGATTACTCTAATTTC 240
|||||||| ||||||||||| ||||||||||||||| ||||||||| |||||||| |||
Sbjct 259 GGAGACAGCTCACGGTTTGATGATGCTCCTGAAGAGATGGATTATGGTTACTCTAGTTTT 318
Query 241 GGGGAGTCGAGTATTAATCCTTTACCTGCTCATGTGAGGAAGGAGATTTTGGAGTTAGGG 300
||||| ||||||| | | ||||||||||||||||||||||||||||||| |||||||||
Sbjct 319 GGGGATTCGAGTAGT--T-CTTTACCTGCTCATGTGAGGAAGGAGATTTTAGAGTTAGGG 375
Query 301 TATCCTGATGATGGTTATAATTACTTGGAGCATTTGAGAGAGATTAAGAATACTGGTGGT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 TATCCTGATGATGGTTATAATTACTTGGAGCATTTGAGAGAGATTAAGAATACTGGTGGT 435
Query 361 GGTTCTAATTTCTATGCGAATCCTAAGTTTGTTGTTGATCAGTTACCTCGTGATGTTAAG 420
|||||||||||||||| ||||||||||| || |||| ||||||||||||||||||||||
Sbjct 436 GGTTCTAATTTCTATGTGAATCCTAAGTATGAGGTTGCTCAGTTACCTCGTGATGTTAAG 495
Query 421 GCTTATGATGCGTCTCGTGTTAAGATCTCTGGTATGGTGAATGAAGAAGGTAATGATAAT 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 496 GCTTATGATGCGTCTCGTGTGAAGATCTCTGGTATGGTGAATGAAGAAGGTAATGATAAT 555
Query 481 AAGTTGATGTATAGTGTGGCGTCGAAGACTGTTAACGTCAAGGTGCAGAAAGCTATTGAT 540
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 556 AAGTTGATGTATAGTGTTGCGTCCAAGACTGTTAACGTCAAGGTGCAGAAAGCTATTGAT 615
Query 541 CCTGAAGTTGCTGCGTTGCTTGAAAACAGTGATGGGTCTGAGTTTGGTTCTGATGTTGAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 CCTGAAGTTGCTGCGTTGCTTGAAAACAGTGATGGGTCTGAGTTTGGTTCTGATGTTGAG 675
Query 601 GATTTGGAAGAAGATTTTGTTATTCAAGCTAATCTTACTCAACAGGGTGAAACTTCTGGT 660
||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 676 GATTTGGAAGAAGATTTTGTTGTTCAAGCTAATCTTACTCAAAAGGGTGAATCTTCTGGT 735
Query 661 GTGAGCAAT-----G-TTGAGTTTTCTGAAATTCCTGAGGTAAG-GAATAGAGAAAGTGA 713
||||||||| | | |||||||||| || | |||||| || ||| |||||||||||
Sbjct 736 GTGAGCAATGGAGAGCTCGAGTTTTCTGTAAGACGTGAGGTTAGAGAA-AGAGAAAGTGA 794
Query 714 TAAACCTGTGGCTGAAAACCCGAGAGTTCCTCGTCAAATTGATGAGCTATTTGATCAGCT 773
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 TGAACCTGTGGCTGAAAACCCGAGAGTTCCTCGTCAAATTGATGAGCTATTTGATCAGCT 854
Query 774 CGAACTCAATGAATATGGAAGTGACAGTGACTGTGATGGTTACATAGCTGAAGAT----- 828
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 855 CGAACTCAATGAATATGGAAGTGATAGTGACGGTGATGGTTACATAGCTGAAGATGGAGA 914
Query 829 -G--G-AGAAGAAGAAGACTTCATGGCTCAAGACGTTCAGAATCTTATTCATGAGAAGGC 884
| | ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 915 AGAAGAAGAAGAAGAAGACTTCATGGCTCAAGAAGTTCAGAATCTTATTCATGGGAAGGC 974
Query 885 GAAAGATTATGAGCTTGAAGAAAAATATATGAACCTTGCAGATATATTGAAGAACAGTGA 944
|||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||
Sbjct 975 AAAAGATTATGAGCTTGAAGAAAAATATATGAACCCTGCGGATATACTGAAGAACAGTGA 1034
Query 945 CTCTGTTAAAGATAAAGAGGAAGTGGACACTGCTGCTCATATTATCCGCCGAACTGTAGA 1004
|||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1035 CTCTGTCAGAGATAAAGAGGAAGTGGACACTGCTGCTCATGTTATCCGCCGAACTGTAGA 1094
Query 1005 ATATGGTGAAAATTTTGATAACGGAAATGAAGATGAATTTGTAGAGCTGACTGAAGAAAG 1064
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1095 ATATGGTGAAAATTTTGATAACGGGAATGAAGATGAATTTGTAGAGCTGACTGAAGAAAG 1154
Query 1065 CAGTGACGAAAGCGAGAAGTATGATTGTGATACTATAGTCTCAACATACTCGAATCGGGA 1124
||| || |||||||||||| |||||||||| || |||||||||||||||||||||| ||
Sbjct 1155 CAGCGATGAAAGCGAGAAGCATGATTGTGAAACCATAGTCTCAACATACTCGAATCTCGA 1214
Query 1125 TAACCTCCCTGGTAAAATCCTTGCTGCCGAGTCAGTC-AGGCAGAAGAAGCTGAGTGAAA 1183
||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||
Sbjct 1215 TAACCTCCCTGGTAAAATCCTTGCTGCAGAGTCAG-CTAGGCAGAAGAAGCTGAGTGAAA 1273
Query 1184 CAGTAGCTAAAGCATTGAGTTCAAACGGCAGAATCATTACTCTCCAAGGGAGAGAGAAGA 1243
|| ||||||| |||||||||||||| || |||||||||| ||||||||||||||||| ||
Sbjct 1274 CATTAGCTAACGCATTGAGTTCAAATGGAAGAATCATTAATCTCCAAGGGAGAGAGAGGA 1333
Query 1244 TTCCTGTCGAGTTTTTACCTGGTAGGAGAGCGGAACAAACCGATGTCAAATCGGAAATCC 1303
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1334 TTCCTGTCGAGTTTTTACCTGGTAGGAGAGCTGAACAAACCGATGTCAAAGCGGAAATCC 1393
Query 1304 CAAAAGCTGAACCGATCAAGAGGAAGACTCATGGTCaagagtcgaaagaagagaagaaag 1363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1394 CAAAAGCTGAACCGATCAAGAGGAAGACTCATGGTCAAGAGTCGAAAGAAGAGAAGAAAG 1453
Query 1364 agcggaaaaatgctgtaaaaaccgaaaagcgagaagcaagGATAATGAAGAAACAGACAT 1423
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1454 AGCGGAAAAATGCTGTAAAAGCCGAAAAGCGAGAAGCAAGGATAATTAAGAAACAGACAA 1513
Query 1424 CCGA-GCTGTATCGTTATGAAACGCTCCGTGCTCAGAA-AGCTGTTGCTTCCTCTGGTCC 1481
|| ||||||| | |||||||| |||||||| || |||||||||| ||||||||||
Sbjct 1514 A-GATGCTGTATTGCGGTGAAACGCAGCGTGCTCA-AAGAGCTGTTGCTACCTCTGGTCC 1571
Query 1482 AAAGTCGAAACATCTATAATAATACTGTTACGAAGGTAAAACAAAACAATTCTCAGACTG 1541
| ||||| || |||| ||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1572 ATCGTCGAGACCTCTAAAATAATA-TGTTACTAAGGTAAAACAAAACAATTCTCAGACTG 1630
Query 1542 TTTAAA-CCAGTTTTTGAAGTCACTTGGTGTAATATTTGCTGTGtttttttttCGTTT-C 1599
|||||| ||||||||| || || || |||||||||||||||| || ||||||| ||| |
Sbjct 1631 TTTAAAACCAGTTTTTCCAGCCATTTCGTGTAATATTTGCTGT-TTGTTTTTTCTTTTTC 1689
Query 1600 ATCAAGATTTGAAAATCTTGAATCttttttttGGATGTGGACGTTTTGAATATTATTTAT 1659
|||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||
Sbjct 1690 ATCAAGATTTGAAAATCTTGAATCTTGTTTT-GGATGTGGAC-TTTTGAATATTATTTAT 1747
Query 1660 TACTTTTACTAGTC 1673
||||||||||||||
Sbjct 1748 TACTTTTACTAGTC 1761
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82680297615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5