BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485357 Length=1673 Score E Sequences producing significant alignments: (Bits) Value AT3G49990.1 | Symbols: | unknown protein; Has 1524 Blast hits ... 2429 0.0 > AT3G49990.1 | Symbols: | unknown protein; Has 1524 Blast hits to 1298 proteins in 225 species: Archae - 9; Bacteria - 84; Metazoa - 474; Fungi - 184; Plants - 98; Viruses - 17; Other Eukaryotes - 658 (source: NCBI BLink). | chr3:18532323-18534274 REVERSE LENGTH=1762 Length=1762 Score = 2429 bits (1315), Expect = 0.0 Identities = 1574/1694 (93%), Gaps = 38/1694 (2%) Strand=Plus/Plus Query 1 ATGGGGAAGAAGAAGTTTATTGATAAGAAAAAGGCGGCGACTTTCGAGTTGTGTCCTCGT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 85 ATGGGGAAGAAGAAGTTTATTGATAAGAAAAAGGCGGCGACTTTCGAGTTGTGTCCTCGT 144 Query 61 GATACGTCTGACCCAAGATACAGTGATGCACCAGGTGGTGATAAGATCTTCTTACGAGTT 120 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 145 GATACGTCAGACCCAAGATACAGTGATGCACCAGGTGGTGATAAGATCTTCTTACGAGTT 204 Query 121 GATCAAAACCCTGTTAACATCAATGGTTTCATCgaagaagaagatgaagaagaagaagaa 180 |||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 205 GATCAAAACCCTGTTAACATCAATGGTTTCAT---TGAAGAAGAT---GAAGAAGAAGAA 258 Query 181 gGAGACAGTTCACGGTTTGAAGATGCTCCTGAAGAGTTGGATTATGATTACTCTAATTTC 240 |||||||| ||||||||||| ||||||||||||||| ||||||||| |||||||| ||| Sbjct 259 GGAGACAGCTCACGGTTTGATGATGCTCCTGAAGAGATGGATTATGGTTACTCTAGTTTT 318 Query 241 GGGGAGTCGAGTATTAATCCTTTACCTGCTCATGTGAGGAAGGAGATTTTGGAGTTAGGG 300 ||||| ||||||| | | ||||||||||||||||||||||||||||||| ||||||||| Sbjct 319 GGGGATTCGAGTAGT--T-CTTTACCTGCTCATGTGAGGAAGGAGATTTTAGAGTTAGGG 375 Query 301 TATCCTGATGATGGTTATAATTACTTGGAGCATTTGAGAGAGATTAAGAATACTGGTGGT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 376 TATCCTGATGATGGTTATAATTACTTGGAGCATTTGAGAGAGATTAAGAATACTGGTGGT 435 Query 361 GGTTCTAATTTCTATGCGAATCCTAAGTTTGTTGTTGATCAGTTACCTCGTGATGTTAAG 420 |||||||||||||||| ||||||||||| || |||| |||||||||||||||||||||| Sbjct 436 GGTTCTAATTTCTATGTGAATCCTAAGTATGAGGTTGCTCAGTTACCTCGTGATGTTAAG 495 Query 421 GCTTATGATGCGTCTCGTGTTAAGATCTCTGGTATGGTGAATGAAGAAGGTAATGATAAT 480 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 496 GCTTATGATGCGTCTCGTGTGAAGATCTCTGGTATGGTGAATGAAGAAGGTAATGATAAT 555 Query 481 AAGTTGATGTATAGTGTGGCGTCGAAGACTGTTAACGTCAAGGTGCAGAAAGCTATTGAT 540 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 556 AAGTTGATGTATAGTGTTGCGTCCAAGACTGTTAACGTCAAGGTGCAGAAAGCTATTGAT 615 Query 541 CCTGAAGTTGCTGCGTTGCTTGAAAACAGTGATGGGTCTGAGTTTGGTTCTGATGTTGAG 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 616 CCTGAAGTTGCTGCGTTGCTTGAAAACAGTGATGGGTCTGAGTTTGGTTCTGATGTTGAG 675 Query 601 GATTTGGAAGAAGATTTTGTTATTCAAGCTAATCTTACTCAACAGGGTGAAACTTCTGGT 660 ||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| Sbjct 676 GATTTGGAAGAAGATTTTGTTGTTCAAGCTAATCTTACTCAAAAGGGTGAATCTTCTGGT 735 Query 661 GTGAGCAAT-----G-TTGAGTTTTCTGAAATTCCTGAGGTAAG-GAATAGAGAAAGTGA 713 ||||||||| | | |||||||||| || | |||||| || ||| ||||||||||| Sbjct 736 GTGAGCAATGGAGAGCTCGAGTTTTCTGTAAGACGTGAGGTTAGAGAA-AGAGAAAGTGA 794 Query 714 TAAACCTGTGGCTGAAAACCCGAGAGTTCCTCGTCAAATTGATGAGCTATTTGATCAGCT 773 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 795 TGAACCTGTGGCTGAAAACCCGAGAGTTCCTCGTCAAATTGATGAGCTATTTGATCAGCT 854 Query 774 CGAACTCAATGAATATGGAAGTGACAGTGACTGTGATGGTTACATAGCTGAAGAT----- 828 |||||||||||||||||||||||| |||||| ||||||||||||||||||||||| Sbjct 855 CGAACTCAATGAATATGGAAGTGATAGTGACGGTGATGGTTACATAGCTGAAGATGGAGA 914 Query 829 -G--G-AGAAGAAGAAGACTTCATGGCTCAAGACGTTCAGAATCTTATTCATGAGAAGGC 884 | | ||||||||||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 915 AGAAGAAGAAGAAGAAGACTTCATGGCTCAAGAAGTTCAGAATCTTATTCATGGGAAGGC 974 Query 885 GAAAGATTATGAGCTTGAAGAAAAATATATGAACCTTGCAGATATATTGAAGAACAGTGA 944 |||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||| Sbjct 975 AAAAGATTATGAGCTTGAAGAAAAATATATGAACCCTGCGGATATACTGAAGAACAGTGA 1034 Query 945 CTCTGTTAAAGATAAAGAGGAAGTGGACACTGCTGCTCATATTATCCGCCGAACTGTAGA 1004 |||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1035 CTCTGTCAGAGATAAAGAGGAAGTGGACACTGCTGCTCATGTTATCCGCCGAACTGTAGA 1094 Query 1005 ATATGGTGAAAATTTTGATAACGGAAATGAAGATGAATTTGTAGAGCTGACTGAAGAAAG 1064 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1095 ATATGGTGAAAATTTTGATAACGGGAATGAAGATGAATTTGTAGAGCTGACTGAAGAAAG 1154 Query 1065 CAGTGACGAAAGCGAGAAGTATGATTGTGATACTATAGTCTCAACATACTCGAATCGGGA 1124 ||| || |||||||||||| |||||||||| || |||||||||||||||||||||| || Sbjct 1155 CAGCGATGAAAGCGAGAAGCATGATTGTGAAACCATAGTCTCAACATACTCGAATCTCGA 1214 Query 1125 TAACCTCCCTGGTAAAATCCTTGCTGCCGAGTCAGTC-AGGCAGAAGAAGCTGAGTGAAA 1183 ||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||| Sbjct 1215 TAACCTCCCTGGTAAAATCCTTGCTGCAGAGTCAG-CTAGGCAGAAGAAGCTGAGTGAAA 1273 Query 1184 CAGTAGCTAAAGCATTGAGTTCAAACGGCAGAATCATTACTCTCCAAGGGAGAGAGAAGA 1243 || ||||||| |||||||||||||| || |||||||||| ||||||||||||||||| || Sbjct 1274 CATTAGCTAACGCATTGAGTTCAAATGGAAGAATCATTAATCTCCAAGGGAGAGAGAGGA 1333 Query 1244 TTCCTGTCGAGTTTTTACCTGGTAGGAGAGCGGAACAAACCGATGTCAAATCGGAAATCC 1303 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| Sbjct 1334 TTCCTGTCGAGTTTTTACCTGGTAGGAGAGCTGAACAAACCGATGTCAAAGCGGAAATCC 1393 Query 1304 CAAAAGCTGAACCGATCAAGAGGAAGACTCATGGTCaagagtcgaaagaagagaagaaag 1363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1394 CAAAAGCTGAACCGATCAAGAGGAAGACTCATGGTCAAGAGTCGAAAGAAGAGAAGAAAG 1453 Query 1364 agcggaaaaatgctgtaaaaaccgaaaagcgagaagcaagGATAATGAAGAAACAGACAT 1423 |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| Sbjct 1454 AGCGGAAAAATGCTGTAAAAGCCGAAAAGCGAGAAGCAAGGATAATTAAGAAACAGACAA 1513 Query 1424 CCGA-GCTGTATCGTTATGAAACGCTCCGTGCTCAGAA-AGCTGTTGCTTCCTCTGGTCC 1481 || ||||||| | |||||||| |||||||| || |||||||||| |||||||||| Sbjct 1514 A-GATGCTGTATTGCGGTGAAACGCAGCGTGCTCA-AAGAGCTGTTGCTACCTCTGGTCC 1571 Query 1482 AAAGTCGAAACATCTATAATAATACTGTTACGAAGGTAAAACAAAACAATTCTCAGACTG 1541 | ||||| || |||| ||||||| |||||| |||||||||||||||||||||||||||| Sbjct 1572 ATCGTCGAGACCTCTAAAATAATA-TGTTACTAAGGTAAAACAAAACAATTCTCAGACTG 1630 Query 1542 TTTAAA-CCAGTTTTTGAAGTCACTTGGTGTAATATTTGCTGTGtttttttttCGTTT-C 1599 |||||| ||||||||| || || || |||||||||||||||| || ||||||| ||| | Sbjct 1631 TTTAAAACCAGTTTTTCCAGCCATTTCGTGTAATATTTGCTGT-TTGTTTTTTCTTTTTC 1689 Query 1600 ATCAAGATTTGAAAATCTTGAATCttttttttGGATGTGGACGTTTTGAATATTATTTAT 1659 |||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||| Sbjct 1690 ATCAAGATTTGAAAATCTTGAATCTTGTTTT-GGATGTGGAC-TTTTGAATATTATTTAT 1747 Query 1660 TACTTTTACTAGTC 1673 |||||||||||||| Sbjct 1748 TACTTTTACTAGTC 1761 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82680297615 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5