BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485358
Length=1393
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50000.1 | Symbols: CKA2, ATCKA2 | casein kinase II, alpha c... 2109 0.0
AT2G23080.1 | Symbols: | Protein kinase superfamily protein | ... 883 0.0
> AT3G50000.1 | Symbols: CKA2, ATCKA2 | casein kinase II, alpha
chain 2 | chr3:18534459-18536970 FORWARD LENGTH=1467
Length=1467
Score = 2109 bits (1142), Expect = 0.0
Identities = 1321/1402 (94%), Gaps = 33/1402 (2%)
Strand=Plus/Plus
Query 1 ACCGCGGGAGAGTTCACTGAATGATTACATGCACCTAATCTTCTTCTTCTCCTACTTTCT 60
||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ACCGCGGGAGAGTGCACCGAATGGTTACATGCACCTAATCTTCTTCTTCTCCTACTTTCT 60
Query 61 TCGAC-GT--TTCTTGTTATTGTGCGCCATCTTGATCTTACGTGCGCCAACGGCGCATTC 117
||||| || | ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TCGACGGTACCTGTTGTTATTGTGCGCCATCTTGATCTTACGTGCGCCGTTGGCGCATTC 120
Query 118 TCCTATACCACCGTTAACGTGCGTCACCACCGGAACCGTTGAATCAGACGTTTCTGGTAT 177
|| ||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 121 TCTTATACCACCATTAACGTGCGTCAACACCGGAACCGTTGAATCAGACGTTACTGGTAT 180
Query 178 CAGGTTCGATCGTTGCCTCGATACCGATTCTCTCGCCGAGATCTCTCTTTCCTCCGTCAC 237
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 181 CAGGTTCGATCGTTGCCTCGATACCGATTCTCTCGCCAAGATCTCTCTTTCCACCGT--- 237
Query 238 AGGAGCGATGTCGAAAGCTCGTGTGTATACCGATGTTAACGTGATTCGACCTAAGGATTA 297
| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 238 -----C-ATGTCGAAAGCTCGTGTTTATACCGATGTTAACGTGATCCGACCTAAGGATTA 291
Query 298 TTGGGATTACGAATCTCTCAATGTTCAGTGGGGGGAGCAAGATGATTACGAGGTAGTGAG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TTGGGATTACGAATCTCTCAATGTTCAGTGGGGGGAGCAAGATGATTACGAGGTAGTGAG 351
Query 358 GAAGGTGGGGAGAGGGAAATACAGTGAGGTTTTTGAGGGGATTAACATGAATAGCAACGA 417
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 352 GAAGGTGGGGAGAGGGAAATACAGTGAGGTTTTTGAGGGGATTAACATGAATAACAATGA 411
Query 418 GAAGTGCATTATCAAGATTCTCAAGCCTGTTAAGAAGAAGAAGATTCGAAGAGAGATTAA 477
|||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 412 GAAGTGTATTATCAAGATTCTCAAGCCTGTTAAGAAGAAGAAGATTAGAAGGGAGATTAA 471
Query 478 AATACTTCAGAATCTCTGTGGAGGGCCGAATATTGTCAAGCTGCTTGATGTTGTCAGAGA 537
||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 472 AATACTTCAGAATCTTTGTGGAGGGCCAAATATTGTAAAGCTGCTTGATGTTGTCAGAGA 531
Query 538 TCAACACTCAAAAACACCAAGCTTGATATTTGAGTATGTTAACAGTACTGACTTTAAGGT 597
||||||||||||||| ||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 532 TCAACACTCAAAAACGCCAAGCTTGATATTTGAGTATGTAAACAGCACAGACTTTAAGGT 591
Query 598 TCTGTATCCAACATTGACTGATTATGACATCCGATACTACATCTATGAGCTGTTGAAGGC 657
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 592 TCTGTATCCAACATTGACTGATTATGACATTCGCTACTACATCTATGAGCTGTTGAAGGC 651
Query 658 ATTGGACTTCTGCCACTCACAAGGAATAATGCACAGAGATGTCAAGCCACACAATGTCAT 717
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 TTTGGACTTCTGCCACTCACAAGGAATAATGCACAGAGATGTCAAGCCACACAATGTCAT 711
Query 718 GATCGACCATGAGCTGCGCAAACTTCGCCTTATAGATTGGGGTCTCGCTGAGTTTTATCA 777
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 712 GATCGACCATGAGCTGCGCAAACTTCGCCTAATAGATTGGGGTCTCGCTGAGTTTTATCA 771
Query 778 TCCTGGAAAAGAGTACAACGTCCGCGTGGCCTCAAGATACTTCAAGGGTCCCGAACTTCT 837
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 772 TCCTGGAAAAGAGTACAACGTCCGTGTGGCCTCAAGATACTTCAAAGGTCCCGAACTTCT 831
Query 838 AGTGGATTTACAGGACTATGACTATTCCTTGGACATGTGGAGCCTTGGTTGCATGTTTGC 897
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 832 AGTTGATTTACAGGACTATGACTATTCCTTGGACATGTGGAGCCTCGGTTGCATGTTTGC 891
Query 898 TGGGATGATATTCCGCAAGGAACCTTTCTTCTATGGCCATGACAACCAGGATCAGCTCGT 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 TGGGATGATATTCCGCAAGGAACCTTTCTTCTATGGCCATGACAACCAGGATCAGCTCGT 951
Query 958 CAAAATTGCCAAGGTACTTGGAACCGATGAATTGAATGCATATCTGAATAAGTATCAGTT 1017
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 952 CAAAATTGCCAAGGTACTCGGAACTGATGAATTGAATGCATATCTGAATAAGTATCAGTT 1011
Query 1018 AGAACTTGATGCTCAACTAGAGGCACTTGTTGGGAGACATAGCAGGAAGCCTTGGTCCAA 1077
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 AGAACTTGATACTCAACTAGAGGCACTTGTTGGGAGACATAGCAGGAAGCCTTGGTCCAA 1071
Query 1078 ATTCATCAACGCCGACAATAGGCATTTGGTCTCACCTGAGGCGATTGATTACCTGGACAA 1137
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1072 ATTCATCAACGCTGACAATAGGCATTTGGTCTCACCTGAGGCGATTGATTATTTGGACAA 1131
Query 1138 GCTACTCCGGTATGATCATCAAGACAGATTAACCGCAAAAGAAGCAATGGCTCATCCCTA 1197
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1132 GCTGCTCCGGTATGATCATCAAGACAGATTAACTGCAAAAGAAGCAATGGCTCATCCCTA 1191
Query 1198 TTTCGCTCAAGTCAGGGCAGCAGAAAGCAGCAGAATGAGGACTCAATAGAGATGTCTCTG 1257
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1192 TTTCGCTCAAGTCAGGGCAGCAGAAAGCAGCAGAATGAGGACTCAATAGAGATGTCTCGG 1251
Query 1258 TCGATTTT-GTTTCTTCTTCT-C-CAA-TGTGCTCTTTTGTTGTTTACTAAAAATACATT 1313
||||||| |||||||||||| | | | ||||||||||||||||||||||| ||||||
Sbjct 1252 CCGATTTTTGTTTCTTCTTCTTCTCCAGTGTGCTCTTTTGTTGTTTACTAA---TACATT 1308
Query 1314 TTCATATCCATATGGATTTCTTTTGA-AATGTCGCAGTTATTTTAAATTATGGATTTCTA 1372
|||||||||||||||||||||||| | ||||||| | | | |||||||||| ||
Sbjct 1309 TTCATATCCATATGGATTTCTTTT-ATAATGTCG-A---A----A--TTATGGATTTATA 1357
Query 1373 AATATGAGAACTT-TTATTACT 1393
|||||||||| || ||||||||
Sbjct 1358 AATATGAGAA-TTCTTATTACT 1378
> AT2G23080.1 | Symbols: | Protein kinase superfamily protein
| chr2:9827113-9829537 FORWARD LENGTH=1311
Length=1311
Score = 883 bits (478), Expect = 0.0
Identities = 831/1001 (83%), Gaps = 26/1001 (3%)
Strand=Plus/Plus
Query 244 GATGTCGAAAGCTCGTGTGTATACCGATGTTAACG-TGATTCGACCTAAGGATTATTGGG 302
||||||||||||| | || ||||| |||||||||| || |||| ||||| || |||||||
Sbjct 115 GATGTCGAAAGCTAGGGTTTATACAGATGTTAACGTTG-TTCGTCCTAAAGAGTATTGGG 173
Query 303 ATTACGAATCTCTCAATGTTCAGTGGGGGGAGCAAGATGATTACGAGGTAGTGAGGAAGG 362
| ||||| |||||| |||||| ||||| | ||||||||||| ||||| ||||| || |
Sbjct 174 ACTACGAGTCTCTCGTTGTTCAATGGGGTCATCAAGATGATTATGAGGTTGTGAGAAAAG 233
Query 363 TGGGGAGAGGGAAATACAGTGAGGTTTTTGAGGGGATTAACATGAATAGC-AACGAGAAG 421
| || ||||| ||||||||||| ||||| || || | ||| | |||| | || ||| |
Sbjct 234 TTGGTAGAGGAAAATACAGTGAAGTTTTCGAAGGCAAAAACGTCAATA-CGAATGAG-CG 291
Query 422 -TGCATTATCAAGATTCTCAAGCCTGTTAAGAAGAAGAAGATTCGA-AGAGAGATTAAAA 479
||| |||||||||| ||||| || || || |||||||||| | | |||||||| ||||
Sbjct 292 TTGCGTTATCAAGATCCTCAAACCCGTAAAAAAGAAGAAGA-TAAAGAGAGAGATCAAAA 350
Query 480 TACTTCAGAATCTCTGTGGAGGGCCGAATATTGTCAAGCTGCT-TGATGTTGTCAGAGAT 538
|||||||||| || ||||| || || |||||||| |||||| | |||| |||| ||||||
Sbjct 351 TACTTCAGAACCTATGTGGTGGACCAAATATTGTTAAGCTG-TATGATATTGTTAGAGAT 409
Query 539 CAACACTCAAAAACACCAAGCTTGATATTTGAGTATGTTAACAGTACT-GACTTTAAGGT 597
| ||||| |||||||| |||||| ||||||||| ||| |||||| | |||||||| ||
Sbjct 410 GAGCACTCCAAAACACCTAGCTTGGTATTTGAGTTTGTCAACAGT-GTGGACTTTAAAGT 468
Query 598 -TCTGTATCCAACATTGACTGATTATGACATCCGATACTACATCTATGAGCTGT-TGAAG 655
| |||||||||||||||||||||| || ||||| ||||| || |||||||| | |||||
Sbjct 469 AT-TGTATCCAACATTGACTGATTACGATATCCGGTACTATATTTATGAGCT-TCTGAAG 526
Query 656 GCATTGGACTTCTGCCACTCACAAGGAATAATGCACAGAGATGTCAAGCCACACAATGTC 715
|||||||| ||||| ||||| |||||||||||||| || ||||| ||||| || ||||||
Sbjct 527 GCATTGGATTTCTGTCACTCTCAAGGAATAATGCATAGGGATGTTAAGCCTCATAATGTC 586
Query 716 ATGATCGACCATGAGCTGCGCAAACTTCGCCTTATAGATTGGGGTCTCGCTGAGTTTTAT 775
||||| || ||| ||||||| |||||||| || ||||||||||| || |||||||||||
Sbjct 587 ATGATAGATCATCAGCTGCGTAAACTTCGTCTGATAGATTGGGGCCTTGCTGAGTTTTAC 646
Query 776 CATCCTGGAAAAGAGTACAACGTCCGCGTGGCCTCAAGATACTTCAAGGGTCCCGAACTT 835
||||| ||||||||||| || || ||||||||||| |||||||||||||||||||| |||
Sbjct 647 CATCCCGGAAAAGAGTATAATGTTCGCGTGGCCTCGAGATACTTCAAGGGTCCCGAGCTT 706
Query 836 CTAGTGGATTTACAGGACTATGACTATTCCTTGGACATGTGGAGCCTTGGTTGCATGTTT 895
|||| ||| ||||||| ||||||||||| || ||||||||||| |||||||||||||||
Sbjct 707 TTAGTTGATCTACAGGATTATGACTATTCTTTAGACATGTGGAGTCTTGGTTGCATGTTT 766
Query 896 GCTGGGATGATATTCCGCAAGGAACCTTTCTTCTATGGCCATGACAACCAGGATCAGCTC 955
||||| ||||||||||| |||||||| ||||| ||||||||||| || || ||||| ||
Sbjct 767 GCTGGCATGATATTCCGTAAGGAACCGTTCTTTTATGGCCATGATAATCATGATCAACTT 826
Query 956 GTCAAAATTGCCAAGGTACTT-GGAACCGATGAATTGA-ATGCA-TATCTGAATAAGTAT 1012
||||||||||||||||| || |||||| |||| || | || || || || || || |||
Sbjct 827 GTCAAAATTGCCAAGGT-GTTGGGAACCAATGAGTT-AGAT-CATTACCTAAACAAATAT 883
Query 1013 CAGTTAGAACTTGATGCTCAACTAGAGGCACTTGTTGGGAGACATAG-CAGGAAGCCTTG 1071
||| |||| ||||| ||||||| || ||||||||||| |||||| | | || || ||
Sbjct 884 CAGCTAGATCTTGACCCTCAACTGGAAGCACTTGTTGGAAGACAT-GTCCCCAAACCATG 942
Query 1072 GTCCAAATTCATCAACGCCGACAA-TAGGCATTTGGTCTCACCTGAGGCGATTGATTACC 1130
|||||| || |||||||| ||||| | |||||||||||||||||||| ||||||| |
Sbjct 943 GTCCAAGTTTATCAACGCGGACAACCA-ACATTTGGTCTCACCTGAGGCAATTGATTTTC 1001
Query 1131 TGGACAAGCTACTCCGGTATGATCATCAAGACAGATTAACCGCAAAAGAAGCAATGGCTC 1190
| || ||||| || | ||||||||||||||||||||||||||||| |||||| |||| ||
Sbjct 1002 TCGATAAGCTTCTTCAGTATGATCATCAAGACAGATTAACCGCAAGAGAAGCCATGGATC 1061
Query 1191 ATCCCTATTTCGCTCAAGTCAGGGCAGCAGAAAGCAGCAGA 1231
|||| || ||||||||||| | || ||||| |||||||||
Sbjct 1062 ATCCATACTTCGCTCAAGTTAAAGCCGCAGAGAGCAGCAGA 1102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68624145015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5