BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485362
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50040.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1899 0.0
> AT3G50040.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G37440.2);
Has 70 Blast hits to 70 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:18549268-18551041
REVERSE LENGTH=1509
Length=1509
Score = 1899 bits (1028), Expect = 0.0
Identities = 1360/1513 (90%), Gaps = 51/1513 (3%)
Strand=Plus/Plus
Query 1 CTTTATGACGCTTAAAGCAAAGCCAAGATCTGAAATGGATATCTCTGGTTGTTCTGCAAA 60
||||||| ||||||||||||| ||||||||||||||||||||||| | ||||||||||||
Sbjct 19 CTTTATGGCGCTTAAAGCAAAACCAAGATCTGAAATGGATATCTCAGATTGTTCTGCAAA 78
Query 61 TCAACAATCAGATGATGTTAATGGAGAT--AGG-T-TTCAAGAAGAGG-A-CGTAGA-AG 113
||||||| |||||| |||||||| || | ||| | ||||| | || | | | | ||
Sbjct 79 TCAACAACCAGATGGTGTTAATGTAG-TGGAGGATGCACAAGAGGTGGAAGAGGATATAG 137
Query 114 TTGATATCATGAAGT-GCGTGAATCAGATTGATGATGAGTTTCAAGAGGATTTGTGTCAA 172
|||||||| |||||| || || || | |||| || || |||||| ||||||| |
Sbjct 138 TTGATATCTTGAAGTGGCATG-ATGATTTTGAAGAGGAAAGAGAAGAGGTTTTGTGTGGA 196
Query 173 GCTTCTTCTTCTTCGAGTTCTTTTGGTGATTCAATGTGTGCTCGTGATGGCGATGATTTT 232
| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 197 G---CTTCTTCTTCAAGTTCTTTTGGTGATTCAATGTGTGCTCGTGATGGTGATGATTTT 253
Query 233 GGTTTTGGTAATGAAGCACAATCAATGTTAAGTCAA-GATTATCCATTGCCTGGAACTTG 291
||||||||| ||||||||||||| |||||||| ||| ||||||||||| |||||||||||
Sbjct 254 GGTTTTGGTGATGAAGCACAATCTATGTTAAG-CAATGATTATCCATTACCTGGAACTTG 312
Query 292 TGATGATGGGACTGAGTTTTTGGGTTTGACTAAGAAGAAGACTAATGATCGGTGGAGGAG 351
|||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||
Sbjct 313 TGATGATGGGACTGAGTTTTTGGGTTTGCCTAAGAAGAAGACGAATGATAGGTGGAGGAG 372
Query 352 ATTGACTAAGCCTTTAATGTGGAGATGTAAGTGGATAGAGCTTAAGGTTAAGGAGATTCA 411
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 ATTGACTAAGCCTATAATGTGGAGATGTAAGTGGATAGAGCTTAAGGTTAAGGAGATTCA 432
Query 412 GTCTCAAGCTAGAGCGTATGAGAAAGAAGTTAAAGATTACTATTTGACTAAACAGTTTGA 471
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 GTCTCAAGCTAGAGGGTATGAGAAAGAAGTTAAAGATTACTATTTGACTAAACAGTTTGA 492
Query 472 TTTGGAGAAGTCGAAATTGGAAGGCTTTGATGGCAAATCGATTCCTTTTCGCGAAAA-AG 530
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 493 TTTGGAGAAGTCGAAATTGGAAGGCTTTGATGGCAAATCGATTCCTTTTCGTGAAAACAA 552
Query 531 CTCAAAGGATGAATGTTTTTAAGAGAGGAAGAAGGAAACGAGTGGAAGAGACAACAGATG 590
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 553 -TCAAAGGAGGAATGTTTTTAAGAGAGGAAGAAGGAAACGAGTGGAAGAGACTACAGATG 611
Query 591 TTGCTGCTTATATGTCTAACCATAATCTTTTCTCTTATGCTGAGAAGCGTGTGCCGGTAA 650
||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 612 TTGCTGCTTATATGTCTAACCATAACCTTTTCTCTTATGCTGATAAGCGGGTGCCGGTAA 671
Query 651 ATGTTAAAGCGCAGTATCTTGATTCCGATTTTGGTACAGGCCGTAAAGCTACGGGCAAGC 710
||||||||| ||||||||||||||| |||||||||||||| || ||||||||||| ||||
Sbjct 672 ATGTTAAAGGGCAGTATCTTGATTCAGATTTTGGTACAGGTCGCAAAGCTACGGGGAAGC 731
Query 711 AAGATG-GAATTGAAGATGATAGTCTTATTTCTGAGTTAGATTGTTCTGATGATGTCCTT 769
|||||| || |||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 732 AAGATGCGA-TTGAAGATGATAGTCTAATTTCTGAGTTAGATTGTTCTGATGATGTACTT 790
Query 770 GCAAAGCTTCTGTGTGAGATTGATGAGGCACAGGGGAAAGCAAGAAGATTGAGGAAGCGT 829
|||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 791 GCAAAGTTTCTGTGTAAGATTGATGAGGCACAGGGAAAAGCAAGAAGATTGAGGAAGCGT 850
Query 830 GTTGATCAGTTGATGTGGGATTCTCAGACTGCTCATACATCATCAATGCCTCAAACGGTA 889
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 851 GTTGATCAGTTGATGTGGGATTCTCAGCCTGCTCATACATCATCAATGCCTCAAATGGTA 910
Query 890 GCTCCCTGTCATAGAGACTCTACGATAAAAAATGGCAACAAATGTGCACTTATTGAAGAC 949
|||||||||||||||||||||| |||| ||| |||||| |||||||| ||| |||||| |
Sbjct 911 GCTCCCTGTCATAGAGACTCTATGATACAAACTGGCAAGAAATGTGCTCTTGTTGAAGCC 970
Query 950 CCGTTGGCTCGTAGGCAGAGAGAGGCGAGTGTACAAATTGGT-AGACAATGTATACCTGC 1008
|||||| ||| | |||||||| |||| | |||||||||||||||
Sbjct 971 CCGTTGACTC--A----------------TGTACAAAATGGTCA-ACAATGTATACCTGC 1011
Query 1009 TGATCTTACCGAACATCTATTGGTGCCTCAGACACAAATTGCTGGGCAACGTTTGACTAA 1068
||||| || |||||| ||| |||||||||||||||| |||| ||||||| ||||||||||
Sbjct 1012 TGATCATATCGAACACCTAATGGTGCCTCAGACACATATTGGTGGGCAATGTTTGACTAA 1071
Query 1069 CAACTCTCCAATTTCATCTAAAAACTTAAGATTTCACCCTATCCTTGAAGACCTGCTAAT 1128
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1072 CAACTCTCCAATTTCATCTAG---CTTAAGATTTCACCCTATCCTTGAAGACCTGCTAAT 1128
Query 1129 GGATGAAACAGAGATGAATGATGATGAAATGGAAGCGGACGACGAGAAGCTTGATTACTT 1188
|||||| |||||||||||||| |||||||||||| ||| ||| | ||||||||||||||
Sbjct 1129 GGATGAGCCAGAGATGAATGATCATGAAATGGAAGGGGATGACAAAAAGCTTGATTACTT 1188
Query 1189 CAGGAAGCTAATCAATGAGATTACAGGCGTGCCACCAGAAGAAGCTGATGCAGAAGAAGT 1248
|| |||| |||||||| |||||||||||||||||| |||||||| |||||||||||||
Sbjct 1189 CATGAAGATAATCAATCAGATTACAGGCGTGCCACGGGAAGAAGCAGATGCAGAAGAAGA 1248
Query 1249 TCCTACACCGGTCAGCAAGAAGCGGAAAACTTCTCACTGAAGCTCTCTCT--GTACAGAG 1306
|||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1249 TCCTACACCGGTCACCAAGAAGCGGAATACTTCTCACTGAAGCTCTCTCTCTGTACAGAG 1308
Query 1307 CCTTATCTTCCTGCCTGATGAGCCAAAACTCATGTCCATAAAGCTCTC-TAAAGATAGTA 1365
||||||||||||||||||| ||| |||| ||||||||||||||||||| ||| |||||||
Sbjct 1309 CCTTATCTTCCTGCCTGATCAGCTAAAATTCATGTCCATAAAGCTCTCATAA-GATAGTA 1367
Query 1366 AAATTGGTATATTCCGTTTATTCTTCTCCCCctctctctctctACTAACTCTTTGGATTT 1425
| ||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct 1368 ATATTGGTATATTCCGTTTATTCTTCTTC---TCTATCTCTCTACTAACTCTTTGGATTT 1424
Query 1426 GGCTCTTTGA-GAATTATGAGACCAGAATAGGTTTCAGAGTTTGTGCACAGTTATGTGAC 1484
|||||||| | ||||||||| ||||||||||||||||||||||||||| ||||| ||||
Sbjct 1425 GGCTCTTT-ATGAATTATGAAACCAGAATAGGTTTCAGAGTTTGTGCAGAGTTAAATGAC 1483
Query 1485 TTAGAACCATATC 1497
|||| ||||||||
Sbjct 1484 TTAGCACCATATC 1496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73845001695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5