BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485364
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50060.1 | Symbols: MYB77 | myb domain protein 77 | chr3:185... 1062 0.0
AT5G67300.1 | Symbols: ATMYBR1, ATMYB44, MYBR1, MYB44 | myb dom... 292 3e-78
> AT3G50060.1 | Symbols: MYB77 | myb domain protein 77 | chr3:18557970-18559106
REVERSE LENGTH=1137
Length=1137
Score = 1062 bits (575), Expect = 0.0
Identities = 785/876 (90%), Gaps = 56/876 (6%)
Strand=Plus/Plus
Query 1 AAAAGATCTGTTTCAATGGCGGATCGTGTTAAAGGTCCATGGAGTCAAGAAGAAGATGAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 41 AAAAGATCTGTTTCAATGGCGGATCGTGTTAAAGGTCCATGGAGTCAAGAAGAAGATGAG 100
Query 61 CAGCTACGTAGGATGGTGGAGAAATACGGTCCGAGGAATTGGTCGGCGATTAGCAAATCG 120
|||||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 101 CAGCTACGAAGGATGGTTGAGAAATACGGACCGAGGAATTGGTCTGCGATTAGCAAATCG 160
Query 121 ATTCCAGGTCGATCTGGTAAATCGTGTAGATTACGGTGGTGTAATCAGTTATCTCCGGAG 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 161 ATTCCAGGTCGATCTGGTAAATCGTGTAGATTACGTTGGTGTAATCAGTTATCTCCGGAG 220
Query 181 GTTGAGCACCGTCCTTTCTCGCCGGAGGAGGATGAGACTATTGTAACGGCTCGTGCTAAG 240
|||||||| |||||||||||||||||||| ||||||||||||||||| || |||||| ||
Sbjct 221 GTTGAGCATCGTCCTTTCTCGCCGGAGGAAGATGAGACTATTGTAACCGCCCGTGCTCAG 280
Query 241 TTTGGTAACAAATGGGCGACGATTGCTCGTCTTCTCAACGGTCGTACGGATAACGCCGTT 300
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 281 TTTGGTAACAAGTGGGCGACGATTGCTCGTCTTCTTAACGGTCGTACGGATAACGCCGTT 340
Query 301 AAAAATCACTGGAACTCGACGCTTAAGAGGAAATGCAGCGGAGGTGTGGCGGCGGTGACG 360
||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||
Sbjct 341 AAAAATCACTGGAACTCTACGCTTAAGAGGAAATGCAGCGGAGGTGTGGCGGT--T-ACG 397
Query 361 GCGACGACGGTGACGGAGACGGAGGAGGAGGAGTATCGGCCGAAGAAGAGGAGATCTGTG 420
||| | |||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 398 ---ACG--G-TGACGGAGACGGAGGAAGATCAGGATCGGCCGAAGAAGAGGAGATCTGTT 451
Query 421 AGCTTTGATTCTGCTTTTGCTCCGGT-----C-G-AT---AC-TGAG-----AG--TCCT 462
|||||||||||||||||||||||||| | | || || |||| || ||||
Sbjct 452 AGCTTTGATTCTGCTTTTGCTCCGGTGGATACTGGATTGTACATGAGTCCTGAGAGTCCT 511
Query 463 AACGGATTCGATGTTAGTGATTCAAGCACGGTTCCGTCTCCGTCGTCTCCTGTTGCTCAG 522
|||||| |||||||||||||||| |||||| ||||||| |||||||||||||||||||||
Sbjct 512 AACGGAATCGATGTTAGTGATTCTAGCACGATTCCGTCACCGTCGTCTCCTGTTGCTCAG 571
Query 523 CTTTTTAAACCAATGCCGATTTCCGGCGG------G------CCG------TTACCGGTT 564
|| |||||||||||||||||||||||||| | ||| |||||||||
Sbjct 572 CTGTTTAAACCAATGCCGATTTCCGGCGGTTTTACGGTGGTTCCGCAGCCGTTACCGGTT 631
Query 565 GAAATGTCTTCGTCTTCGGAGGATCCGACA-ACGTCGTTGAGTTTGTCACTACCTGGAGC 623
|||||||||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 632 GAAATGTCTTCGTCTTCGGAGGATCC-ACCTACTTCGTTGAGTTTGTCACTACCTGGAGC 690
Query 624 TGAGAACACGAGTTCGAACTACATCAACAACAACAACGCGTTGATGTTTCCGAGATTTGA 683
||||||||||||||||| | | | ||| ||||||||||||||||||||||||||||||||
Sbjct 691 TGAGAACACGAGTTCGAGCCATAACAATAACAACAACGCGTTGATGTTTCCGAGATTTGA 750
Query 684 GAGTCAGATGAAGATTAATGTagaggagagaggaggaggagaAGGACGTAGAGGTGAGTT 743
||||||||||||||||||||||||||||||||||| | || | |||||||||||||||
Sbjct 751 GAGTCAGATGAAGATTAATGTAGAGGAGAGAGGAG-A--AG--G-ACGTAGAGGTGAGTT 804
Query 744 TATGACGGTGGTGCAAGAGATGATTAAAGCTGAAGTGAGGAGTTACATGGCGGAGATGCA 803
||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 805 TATGACGGTGGTGCAGGAGATGATAAAAGCTGAAGTGAGGAGTTACATGGCGGAAATGCA 864
Query 804 GAAAACGAGTGGTGGTGGATTCGTCGTCGGAGGTTT 839
|||||| |||||||| ||||||||||||||||||
Sbjct 865 GAAAACAAGTGGTGG---ATTCGTCGTCGGAGGTTT 897
Score = 91.6 bits (49), Expect = 1e-17
Identities = 54/56 (96%), Gaps = 1/56 (2%)
Strand=Plus/Plus
Query 924 aaaa-aaaaTGTACAGATGAATTAAAATTTCTATGGAATAATCTTAAATCTCAAAT 978
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1044 AAAACAAAATGTACAGAGGAATTAAAATTTCTATGGAATAATCTTAAATCTCAAAT 1099
> AT5G67300.1 | Symbols: ATMYBR1, ATMYB44, MYBR1, MYB44 | myb domain
protein r1 | chr5:26854022-26856006 FORWARD LENGTH=1985
Length=1985
Score = 292 bits (158), Expect = 3e-78
Identities = 276/333 (83%), Gaps = 8/333 (2%)
Strand=Plus/Plus
Query 13 TCAATGGCGGATCGTG-TTAAAGGTCCATGGAGTCAAGAAGAAGATGAGCAGCTACGTAG 71
|||||||| ||| | | | |||||||||||||||| |||||||| |||||||| |||||
Sbjct 85 TCAATGGCTGATAG-GATCAAAGGTCCATGGAGTCCTGAAGAAGACGAGCAGCTTCGTAG 143
Query 72 GATGGTGGAGAAATACGGTCCGAGGAATTGGTCGGCGATTAGCAAATCGATTCCAGGTCG 131
| | || | ||||||||||| || || ||| | | |||||||||||| ||||| ||| |
Sbjct 144 GCTTGTTGTTAAATACGGTCCAAGAAACTGGACAGTGATTAGCAAATCTATTCCCGGTAG 203
Query 132 ATCTGGTAAATCGTGTAGATTACGGTGGTGTAATCAG-TTATCTCCGGAGGTTGAGCACC 190
||| || ||||||||| | ||||||||||| || ||| || || ||| | |||||||| |
Sbjct 204 ATCGGGGAAATCGTGTCGTTTACGGTGGTGCAACCAGCTT-TCGCCGCAAGTTGAGCATC 262
Query 191 GTCC-TTTCTCGCCGGAGGAGGATGAGACTATTGTAACG-GCTCGTGCTAAGTTTGGTAA 248
| || ||| ||| | ||||| || ||||| || | ||| |||| ||| |||| |||||
Sbjct 263 GGCCGTTT-TCGGCTGAGGAAGACGAGACGATCG-CACGTGCTCACGCTCAGTTCGGTAA 320
Query 249 CAAATGGGCGACGATTGCTCGTCTTCTCAACGGTCGTACGGATAACGCCGTTAAAAATCA 308
||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 321 TAAATGGGCGACGATTGCTCGTCTTCTCAACGGTCGTACGGACAACGCCGTGAAGAATCA 380
Query 309 CTGGAACTCGACGCTTAAGAGGAAATGCAGCGG 341
||||||||||||||| |||||||||||| ||||
Sbjct 381 CTGGAACTCGACGCTCAAGAGGAAATGCGGCGG 413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47873142091
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5