BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485366
Length=1652
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50080.1 | Symbols: VFB2 | VIER F-box proteine 2 | chr3:1857... 1947 0.0
AT5G67250.1 | Symbols: SKIP2, VFB4 | SKP1/ASK1-interacting prot... 789 0.0
> AT3G50080.1 | Symbols: VFB2 | VIER F-box proteine 2 | chr3:18572736-18574514
FORWARD LENGTH=1779
Length=1779
Score = 1947 bits (1054), Expect = 0.0
Identities = 1332/1462 (91%), Gaps = 36/1462 (2%)
Strand=Plus/Plus
Query 217 AATCGTCACCGTTTATCACTTGATGCTAAATCTGAGATTCTCCCTTTCTTGCCTTGTATC 276
||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 284 AATCGTCACCGTTTATCACTTGACGCTAAATCTGAGATTCTCCCTTTCTTACCATGTATC 343
Query 277 TTCAATCGGTTCGATTCCGTAACAAAGCTCGCTCTTCGTTGTGATCGGAGGTCTTTTAGC 336
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 344 TTCAATCGATTCGATTCCGTAACAAAGCTCGCTCTTCGTTGTGATCGGAGATCTTTTAGC 403
Query 337 TTGAGCGATGAAGCTTTAGTCATGA-TCTCGATTCGTTGCTCGAATCTGATTCGAGTCAA 395
|| ||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||
Sbjct 404 TTAAGCGATGAAGCTTTATTCAT-AGTCTCGATTCGTTGCTCGAATCTGATTCGAGTCAA 462
Query 396 GCTTCGTGGTTGTCGCGAGATTACGGATCTAGGAATGGAATCGTTCGCTAGAAACTGTAG 455
||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||
Sbjct 463 GCTTCGTGGTTGTCGAGAGATAACAGATCTAGGTATGGAATCGTTCGCTAGAAACTGTAA 522
Query 456 GAACTTGAGGAAGCTATCGTGTGGCTCTTGTAATTTCGGTGCAAAGGGATTAAACGCGAT 515
|| ||||||||| |||| ||||||||||||| ||||||||| |||||| ||||||||||
Sbjct 523 GAGCTTGAGGAAATTATCATGTGGCTCTTGTACTTTCGGTGCGAAGGGAATAAACGCGAT 582
Query 516 GCTTGAGCATTGCAAGGTTCTTGAGGAGTTATCTGTGAAGAGAATCAGAGGAATTGATGA 575
|||||||||||| ||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 583 GCTTGAGCATTGTAAGGTTCTTGAGGAGTTATCTCTGAAGAGAATCAGAGGACTTCATGA 642
Query 576 ATTGGCTGAGCCAATTAAGGTGAGTTCGTCTTCTTCACTTAGAAC-GAT-TTGTTTGAAG 633
||||||||||||||| ||| |||||| |||| ||||||||||| | | | || |||||||
Sbjct 643 ATTGGCTGAGCCAATAAAGCTGAGTTTGTCTGCTTCACTTAGATCTG-TGTT-TTTGAAG 700
Query 634 GAGCTTGTTAATGGTGAGGTATTTGAATCTTTGGTTGCTACAACAACTTTGAAAAAACTT 693
||||||||||||||| |||| |||| ||||||||||||||| | ||||||||| ||| ||
Sbjct 701 GAGCTTGTTAATGGTCAGGTGTTTGGATCTTTGGTTGCTACTAGAACTTTGAAGAAAGTT 760
Query 694 AGAATCATTCGTTGTTTAGGTGATTGGGATAGAGTTCTTGAAATGAATGGAGATGGGAAT 753
| ||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 761 AAAATCATTCGTTGTTTAGGTAATTGGGATAGAGTTTTTGAAATGAATGGAAATGGGAAT 820
Query 754 AGTTCTTTGACTGAGATTCATCTGGAGAGGCTTCAAGTGAGTGATGTTGGACTCTCTGGT 813
|||||||| |||||||||| ||| |||||||||||||||| |||| ||||||| | ||||
Sbjct 821 AGTTCTTTAACTGAGATTCGTCTAGAGAGGCTTCAAGTGACTGATATTGGACTGTTTGGT 880
Query 814 ATATCTAAATGTTCAAATTTAGAGACTTTGCATATAGTGAAAACCCCTGAATGTTCGAAT 873
|||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 881 ATATCTAAATGTTCGAATTTAGAGACTTTGCATATAGTGAAAACTCCTGATTGCTCGAAT 940
Query 874 ATAGGTTTAGCTAGTGTTGTAGAGAGATGTAAGTTACTGAGAAAGCTTCATATTGATGGT 933
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 941 TTAGGTTTAGCTAGTGTTGTTGAGAGATGTAAGTTACTGAGAAAGCTTCATATTGATGGT 1000
Query 934 TGGAGGATTAAGAGGATCGGTGATGAAGGTTTGATGTCTGTAGCTAAGCACTGCTTGAAT 993
|||||| |||||||||| |||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1001 TGGAGGGTTAAGAGGATTGGTGATCAAGGTTTGATGTCTGTAGCTAAGCACTGTTTGAAT 1060
Query 994 TTGCAAGAGCTTGTACTTATCGGTGTTGATGCGACGTATATGAGCTTGTCAGCTATTGCT 1053
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1061 TTGCAAGAGCTTGTACTTATCGGTGTTGATGCGACGTATATGAGCTTGTCTGCTATTGCT 1120
Query 1054 TCAAACTGTAAGAAGCTTGAACGGTTAGCTCTTTGTGGGAGTGGTACGATTGGGGACACG 1113
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1121 TCAAACTGTAAGAAGCTTGAACGGTTAGCTCTTTGTGGGAGTGGTACGATTGGGGATGCG 1180
Query 1114 GAGATTGGTTGTATCGCTGAGAAATGTGTGGCGCTGAGGAAATTCTGTATCAAGGGATGT 1173
||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||
Sbjct 1181 GAGATTGGTTGTATCGCGGAGAAATGTGTGACGTTGAGGAAATTCTGTATCAAGGGATGT 1240
Query 1174 CTGATTTCAGATGTCGGGATCAAGGCGTTGGCTTTAGGCTGTCCTAAGCTGGTGAAACTG 1233
||||||||||||| ||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 1241 TTGATTTCAGATGTAGGGGTCCAGGCGTTGGCTTTAGGCTGTCCTAAGTTGGTGAAACTG 1300
Query 1234 AAAGTGAAGAAATGTAGATTGGTTACAGGTGAAGTTAGGGAATGGCTGCGTGAACGGAGG 1293
|| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1301 AAGGTGAAGAAATGTAGTTTGGTTACAGGTGAAGTTAGGGAATGGTTGCGTGAACGGAGG 1360
Query 1294 ATGACGTTGGTGGTGAGTATGGATGATGATGAAACCAGTGGTGTGGGTATTG-TGGATGG 1352
||||| ||||||||||||||||||||||||||||||| |||||||||| ||| |||||||
Sbjct 1361 ATGACATTGGTGGTGAGTATGGATGATGATGAAACCAATGGTGTGGGT-TTGGTGGATGG 1419
Query 1353 TGGTGATCAGAGAGTTCTTGAGACGGTAGCTGAGGAGGATCCGCTGCCGGTGACTGATGG 1412
||||||||||||||||||||||||||| | ||||||||| | | ||| |||| ||||||
Sbjct 1420 TGGTGATCAGAGAGTTCTTGAGACGGTTGTTGAGGAGGAGGCTCCGCCAGTGATTGATGG 1479
Query 1413 TGATGGTGGTGCGGGGGTTGCAGGTGGTGGGAGAATAGGGTTAGCTATCTTAAAGACAAA 1472
|||||||||| ||| |||||||||||||| || |||||||||||||||| ||||||||
Sbjct 1480 TGATGGTGGTTTGGGAGTTGCAGGTGGTGGTAGGCTAGGGTTAGCTATCTTGAAGACAAA 1539
Query 1473 GTTAGGGTTACTTGCAGGAAGGAACTTGGTTGCTTGTACGTTTAGGAGATGGTCTCAAAG 1532
|||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||||||
Sbjct 1540 GTTAGGGTTACTTGCAGGAAGGAACTTGGTGGCTTGCACGTTGAGAAGATGGTCTCAAAG 1599
Query 1533 TGAAGCTACTAGTTCCATTTGATTG-A-----------AAACAAAGGGTCTTTG--T-G- 1576
||||||||||||||||||||||||| | |||||| ||||||||| | |
Sbjct 1600 TGAAGCTACTAGTTCCATTTGATTGCACTTTTTTTTTTAAACAA-GGGTCTTTGACTCGT 1658
Query 1577 ----CATTCAGAACAAAAACCTACTTCTGTAT-ATTATTTCTTGTTTCCT-ATGTTGATA 1630
|||||||||||||| || |||||||||| |||||||||||||| | || || ||
Sbjct 1659 TGTGCATTCAGAACAAAACCC-ACTTCTGTATTATTATTTCTTGTTTGTTTAT-TT--TA 1714
Query 1631 ATCTTCACAATTCATTTTCAAA 1652
|||||||||||||||||||||
Sbjct 1715 -TCTTCACAATTCATTTTCAAA 1735
Score = 353 bits (191), Expect = 3e-96
Identities = 207/215 (96%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 1 ATACTCAACCACACAAAAATGGGCCAAGCTCCGTCGTCTCCGGCGGATTCAAGCGTACGC 60
|||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||
Sbjct 35 ATACTCAACCACACAACAATGGGCCAAGCTCCGTCGTCTCCGGCGGAACCAAACGTACGC 94
Query 61 GATACTTATTTATGGCTCTGGTCACCGGAATTTCTCGATTGCGAATCGATTGGTTTCGAA 120
||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 95 GATACTTCTTTATGTCTATGGTCACCGGAATTTCTCGATTGCGAATCGATTGGTTTCGAA 154
Query 121 GACGGAGATTACGATTTCACGGCAAATCTACCAGACGATTGCCTCGCTCATATCTTTCAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 GACGGAGATTACGATTTCACGGCAAATCTACCAGACGATTGCCTCGCTCATATCTTTCAA 214
Query 181 TTTCTCAGCGCCGGAGATCGGAAACGATGCTCTCT 215
|||||||| ||||||||||||||||||||||||||
Sbjct 215 TTTCTCAGTGCCGGAGATCGGAAACGATGCTCTCT 249
> AT5G67250.1 | Symbols: SKIP2, VFB4 | SKP1/ASK1-interacting protein
2 | chr5:26831373-26833333 REVERSE LENGTH=1961
Length=1961
Score = 789 bits (427), Expect = 0.0
Identities = 920/1150 (80%), Gaps = 66/1150 (6%)
Strand=Plus/Plus
Query 219 TCGTCACCGTTTATCACTTGATGCTAAATCTGAGATTCTCC-CTTT-CTTGCCTTGTATC 276
|||||| || ||||| || |||||||| ||||| ||||| |||| ||| || | |||
Sbjct 313 TCGTCATCGGTTATCTCTAGATGCTAAGGATGAGA-TCTCCTCTTTCCTTACC-TCTATG 370
Query 277 TTCAATCGGTTCGATTCCGTAACAAAGCTCGCTCTTCGTTGTGATCGGAGGTCTTTTAGC 336
|||||||| |||||||| || || ||||| ||||| || |||||||||| |||| |||||
Sbjct 371 TTCAATCGATTCGATTCGGTGACGAAGCTTGCTCTCCGATGTGATCGGAAGTCTGTTAGC 430
Query 337 TTGAGCGATGAAGCTTTAGTC-ATGATCTC-GATTCGTTGCTCGAATCTGATTCGAGTCA 394
||||||||||||||||| | | |||||||| | ||||||| | |||||||| ||| || |
Sbjct 431 TTGAGCGATGAAGCTTT-GGCTATGATCTCTG-TTCGTTGTTTGAATCTGACTCGTGTTA 488
Query 395 AGCTTCGTGGTTGTCGCGAGATTACGGATCTAGGAATGGAAT-CGTTCGCTA-GAAACTG 452
||||||||||||||||||||||||||||||| ||||||||| | ||||||| ||| ||
Sbjct 489 AGCTTCGTGGTTGTCGCGAGATTACGGATCTGGGAATGGAAGAC-TTCGCTAAGAAT-TG 546
Query 453 TAGGAA-CTTGAGGAAGCTATCGTGT-GGCTCTTGTAATTTCGGTGC-AAAGG-GATTAA 508
|| || ||| || |||||||| ||| || ||||| |||||||| || ||||| | | ||
Sbjct 547 TAAAAATCTTAAG-AAGCTATC-TGTTGGATCTTGCAATTTCGGAGCTAAAGGCG-TGAA 603
Query 509 ACGCGATGCTTGAGCATTGCAAGGTTCTTGAGGAGTTATCTGTGAAGAGAAT-CAGAGGA 567
||||||||| || ||||| ||| |||| ||||| || || |||||| || | | |||||
Sbjct 604 -CGCGATGCTCGAACATTGTAAGCTTCTGGAGGAATTGTCGGTGAAGCGACTTC-GAGGA 661
Query 568 ATTGATGAATTGGCTGAGCCAATT-A---AG--G-TGA-G-TTCGTCTTCTTCACTTAGA 618
||| ||||| |||||| ||| | | | ||| | ||| |||||||| || ||
Sbjct 662 ATTCATGAAGCAGCTGAGTTGATTCACCTACCTGATGATGCTTCATCTTCTTCGCTCAGG 721
Query 619 ACGATTTGTTTGAAGGAGCTTGTTAATGGTGAGGTATTTGAATCTTTGGTTGCTACAACA 678
| ||||| ||||||||||| |||||||| ||||||||||| | ||| ||||||| |||
Sbjct 722 TCTATTTGCTTGAAGGAGCTCGTTAATGGCCAGGTATTTGAACCGTTGCTTGCTACTACA 781
Query 679 A---CTTTGAAAAAACTTAGAATCATTCGTTGTTTAGGTGATTGGGATAGAGTTCTTGAA 735
| | |||||| ||| | ||||||||||||||| ||||||||||||| ||||||| |
Sbjct 782 AGAACACTGAAAACACTGAAAATCATTCGTTGTTTGGGTGATTGGGATAAAGTTCTTCAG 841
Query 736 ATGAATGGAGATGGGAATAGTTCTTTGACTGAGATTCATCTG-GAGAGGCTTCAAGTGAG 794
|||| || | |||| || |||||||| | ||| ||||| || |||||||| ||||| ||
Sbjct 842 ATGATTGCAAATGGTAAGAGTTCTTTAAGTGAAATTCA-CTTAGAGAGGCTCCAAGTTAG 900
Query 795 TGATGTTGGACTCTCTG-GTATATCTAAATGTTCAAAT-TTAGAGACTTTGCATATAGTG 852
||| |||| || |||| | ||||||||||| |||||| || ||||| ||||||||||||
Sbjct 901 TGACATTGGGCTATCTGCG-ATATCTAAATGCTCAAATGTT-GAGACATTGCATATAGTG 958
Query 853 AAAACCCCTGAATGTTCGAA-TATAGGTTT-AGCTAGTGTTG-TAGAGAGATGTAAGTTA 909
||||| || |||||||| || | | ||| | | || ||| | | |||||||||||| |
Sbjct 959 AAAACTCCAGAATGTTCAAACTTT-GGTCTGATTTA-TGTAGCT-GAGAGATGTAAGCTG 1015
Query 910 CTGAGAAAGCTTCATATTGATGGTTGGAGGATTAAGAGGATCGGTGATGAAGGTTTGA-T 968
||||| ||||||||||||||||||||||||| ||| ||||| |||||||||||||| | |
Sbjct 1016 CTGAGGAAGCTTCATATTGATGGTTGGAGGACTAATAGGATAGGTGATGAAGGTTT-ACT 1074
Query 969 GTCTGTAGCTAAGCACTGCTTGAATTTGCAAGAGCTTGTACTTATCGGTGTTGATGCGAC 1028
|||||||| || ||||| || || |||||||| ||||| || || |||||| |||| ||
Sbjct 1075 TTCTGTAGCCAAACACTGTTTAAACTTGCAAGAACTTGTGCTGATTGGTGTTAATGCAAC 1134
Query 1029 GTATATGAGCTT-GTCAGCTATTGCTTCAAACTGTAAGAAGCTTGAACGGTTAGCTCTTT 1087
||||||| || | |||| ||||||||||||||| |||| || ||||||||||| ||||
Sbjct 1135 ACATATGAGTTTAG-CAGCCATTGCTTCAAACTGTGAGAAACTCGAACGGTTAGCACTTT 1193
Query 1088 GTGGGAGTGGTACGATTGGGGACACGGAGATTGGTTGTATCGCTGAG-AAATGTGTG-GC 1145
| || ||||| || || || || || ||||||| ||| |||||| || ||||||| | ||
Sbjct 1194 GCGGAAGTGGAACAATAGGCGATACAGAGATTGCTTGCATCGCT-AGGAAATGTG-GAGC 1251
Query 1146 GCTGAGGAAATTCTGTATCAAGGGATGTC-TGATTTCAGAT-GTCGGGATCAAGGCGTTG 1203
|||||||||||||||| || ||||||| || |||| ||| | ||||| ||||| |
Sbjct 1252 ATTGAGGAAATTCTGTATTAAAGGATGTCCTG-TTTCGGATCGA-GGGATTGAGGCGCTC 1309
Query 1204 GCT-TTAGGCTGTCCTAAGCTGGTGAAACTGAAAGTGAAGAAATGTAGA-TTGGTTACAG 1261
||| || || |||||||| ||||| ||| |||| ||||||||||||| | ||| | || |
Sbjct 1310 GCTGTT-GGTTGTCCTAATCTGGTTAAATTGAAGGTGAAGAAATGTAAAGTTG-TGACTG 1367
Query 1262 GTGA-AGTTAGG-GAATGGCTGCGTGAACGGAGGATGACGTTGGTGGTGAGTATGGATGA 1319
| || | || || || ||||||||||||| |||| ||| | ||||||||||||||||
Sbjct 1368 GAGAGA-TT-GGAGATTGGCTGCGTGAACAAAGGAGGACACTAGTGGTGAGTATGGATGG 1425
Query 1320 TGATGAAACC 1329
||||||||||
Sbjct 1426 TGATGAAACC 1435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81626086170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5