BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485369
Length=2130
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50110.1 | Symbols: ATPEN3, PEN3 | PTEN 3 | chr3:18580609-18... 3234 0.0
> AT3G50110.1 | Symbols: ATPEN3, PEN3 | PTEN 3 | chr3:18580609-18584535
REVERSE LENGTH=2251
Length=2251
Score = 3234 bits (1751), Expect = 0.0
Identities = 2022/2148 (94%), Gaps = 37/2148 (2%)
Strand=Plus/Plus
Query 1 ACGTTCATCGGAAATTTCGTACGCTGCTGCTCTGAATC--AA-C-G--CCAATCTTCTTC 54
|||||||||||||||||||||||||||||||||||||| || | | ||||||||||||
Sbjct 1 ACGTTCATCGGAAATTTCGTACGCTGCTGCTCTGAATCAGAATCAGCTCCAATCTTCTTC 60
Query 55 TTCATCCATTGAATCTCTTCTTCGCTACGaaaaaaaaaaaaCTCGAAGCTAATCGTCCTG 114
|| ||||||||||||||| ||||||||| |||||||||||||||| |||||||||
Sbjct 61 CTCCTCCATTGAATCTCTT-TTCGCTACG----GAAAAAAACTCGAAGCTTATCGTCCTG 115
Query 115 CATTCTCCGTTTTTC-TTTTGCTCGTAAAGTAAGGCTAATCGTTGTCTGAGCTAGCGTTG 173
||||||||| ||||| |||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 116 CATTCTCCGGTTTTCGTTTT-CTCGTAAAGTAAGGCTCATCGTTGTCTGAGCTAGCGTTG 174
Query 174 GATTGCTAAAATGGAAACTGATCCTGCTGACTCTACATCTCAGTCTCCAGCTATAGTATC 233
|||||||||||||||||||||||||||| ||||| |||| ||||||||||| |||||||
Sbjct 175 GATTGCTAAAATGGAAACTGATCCTGCTAACTCTTCATCGAAGTCTCCAGCTGTAGTATC 234
Query 234 TGAGAAAGATGTAGTGATTCCTGGTAA--TTCTGAAAATACTATGGGCGTTGTACAAGAT 291
||||||||||||| |||||||| | || ||||||||||||| |||||||||||||||||
Sbjct 235 TGAGAAAGATGTATTGATTCCT-G-AACCTTCTGAAAATACTGTGGGCGTTGTACAAGAT 292
Query 292 CCCGTGAGCTCTGCGGGAGAAGCTCATGAAGACTCCGTTAGTACAGAAGCTTCAATTGCA 351
|| |||||| ||| ||||||||||||||||||| |||||||||||||||| |||||
Sbjct 293 CCTGTGAGCGCTGAAAGAGAAGCTCATGAAGACTCTATTAGTACAGAAGCTTCTGTTGCA 352
Query 352 AAGGTTGATGATACTCAAATGCCTGCTAGTTCTACCGGCTCTGAACCTTTAAGTAAAACG 411
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 AAGGTTGATGATACTCAAATGCCTGCTAGTTCTACCGGCTCTGAACCTTTAAGTAAAACA 412
Query 412 GATGATATAGTTCCATGCCCGCCAGGTTCTTCTCCACGCGAATCACCGCCATCTATATTT 471
|||||||||||||||||||| |||||||| || ||||||||||||||||| |||||||||
Sbjct 413 GATGATATAGTTCCATGCCCACCAGGTTCCTCCCCACGCGAATCACCGCCGTCTATATTT 472
Query 472 TCTTCTTCTGGTCTTTCTTCTTGGGCCAAGAGTTTTAAATTCCCGCAGCAAGATCCAAA- 530
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 473 TCTTCTTCTGGTCTTTCTTCTTGGGCCAAAAGTTTTAAATTCCAGCAGCAAGATCCAAAT 532
Query 531 CGGTACAGATTCTGGGATGTCAGCTTTCACAAGATTCACCTCTGAACTTGGTCTGCATTT 590
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 C-GTACAGATTCTGGGATGTCAGCTTTCACAAGATTCACCTCTGAACTTGGTCTGCATTT 591
Query 591 GCCATCGAAAGGGTCTGAGGAGGTTGGTGACCCTAGATCATCAAACACACAAGTTGGTGG 650
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 592 GCCAACGAAAGGGTCTGAGGAGGTTGGTGATTCTAGATCATCAAACACACAAGTTGGTGG 651
Query 651 GGCTCTTGAGTCGCTCACAAAAGCTGTGGTTGATTCATCTCGTGGTGCCGTAAAAGCAAT 710
||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 652 TGCTTTTGAGTCCCTCACAAAAGCTGTGGTTGATTCATCTCGTGGTGCCGTTAAAGCAAT 711
Query 711 GCAGGTGAAAGCACGCCACATTGTCTCTCAGAACAAAAGAAGATATCAGGAGGGGGAATT 770
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 712 GCAGGTGAAAGCACGCCACATTGTCTCTCAGAACAAAAGAAGATACCAGGAGGGGGAATT 771
Query 771 CGATTTGGACATGACATATATAACTGAGAATATAATTGCAATGGGGTTCCCAGCTGGTGA 830
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 772 CGATTTGGACATGACATATATAACTGAGAATATAATCGCAATGGGGTTCCCAGCTGGTGA 831
Query 831 CATAAGCTCTGGTCTTTTCGGATTTTTCGAGGGACTATATCGTAATCACATGGAAGAGGT 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 CATAAGCTCTGGTCTTTTCGGATTTTTCGAGGGACTATATCGTAATCACATGGAAGAGGT 891
Query 891 GATAAAGTTTTTTGAGACTCATCACAAGGACAAATATAAGGTCTACAACCTTTGTTCAGA 950
||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 892 GATAAAGTTTTTTGAAACTCATCATAAGGATAAATATAAGGTCTACAACCTTTGTTCAGA 951
Query 951 GAGATTATACGATGCTTCAAGATTTGAGGGGAAGGTTGCGTCTTTCCCATTCGATGACCA 1010
|||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 952 GAGATTGTACGATGCTTCAAGATTTGAGGGGAAGGTTGCATCTTTCCCATTTGATGATCA 1011
Query 1011 TAATTGTCCTCCTATCCAATTGATCCCATCGTTTTGTCAGAGTGCATACACATGGTTGAA 1070
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||
Sbjct 1012 TAATTGTCCTCCTATCCAATTGATACCATCGTTTTGTCAAAGTGCATACACATGGCTGAA 1071
Query 1071 GGAAGATATCCAAAATGTAGTGGTAGTTCATTGTAAAGCTGGAATGGCAAGAACCGGATT 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 GGAAGATATCCAAAATGTAGTGGTAGTTCATTGTAAAGCTGGAATGGCAAGAACCGGATT 1131
Query 1131 AATGATTTGTTGTCTTCTTCTATATCTCAAGTTCTTTCCTACAGCTGAGGAGGCTATTGA 1190
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1132 AATGATTTGCTGTCTTCTTCTATATCTCAAGTTCTTTCCTACAGCTGAAGAGGCTATTGA 1191
Query 1191 TTACTATAACCAAAAGAGATGTCTTGATGGGAAAGCTCTCGTCCTACCAAGTCAGATTCG 1250
||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 1192 TTACTATAACCAAAAGAGATGTCTTGATGGGAAAGCTCTTGTTCTCCCAAGTCAGATTCG 1251
Query 1251 ATATGTCAAGTACTATGAACGTGTTCAAAATCAATTTGACGGGAAAGTTCCACCCGAACG 1310
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1252 ATATGTCAAGTACTACGAACGTGTTCAAAACCAATTTGACGGGAAAGTTCCACCCGAGCG 1311
Query 1311 AAGATGCATGCTCAGAGGGTTTCGCCTAATCAACTGCCCTTACTGGATTAGCCCTGCCAT 1370
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1312 AAGATGCATGCTCAGAGGATTTCGCCTAATCAACTGCCCTTACTGGATTAGACCTGCCAT 1371
Query 1371 TACGATCTCCAACCACACTGATATACTTTTCTCAACAAAGAAACATCAGAAAACCAAGGA 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 TACGATCTCCAACCACACTGATATACTTTTCTCAACAAAGAAACATCAGAAAACCAAGGA 1431
Query 1431 TTTGGGGCCTGAAGATTTTTGGATAAAGGCACCCAAAAAAGGAGTTGTTGTCTTTGCAAT 1490
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1432 TTTGGGGCCTGAAGATTTTTGGATAAAGGCACCCAAAAAGGGAGTGGTTGTCTTTGCAAT 1491
Query 1491 ACCTGGTGAAGCTGGTTTAACAGAATTAGCCGGCGACTTCAAAATCCACTTTCAAGATAG 1550
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 ACCTGGTGAAGCTGGTCTAACAGAATTAGCCGGCGACTTCAAAATCCACTTTCAAGATAG 1551
Query 1551 TGATGGAGATTTCTACTGTTGGCTAAATACTACACTGACTGATAACAGAACTATGCTGAA 1610
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1552 CGATGGAGATTTCTACTGTTGGCTAAATACTACACTGACTGATAACAGAACAATGCTGAA 1611
Query 1611 AGGTAGTGACTTTGATGGCTTTGAAAAGAGAAAATTGCCTGCACCGGGTTTTCATGTCGA 1670
||| |||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||
Sbjct 1612 AGGCAGTGACTTTGATGGCTTTGACAAGAGAAAACTGCCTGCACCGGGTTTCCATGTCGA 1671
Query 1671 GATTGTAATGATAGAACCCGACAATTCACAACCAACAAAATCCAAATCTGATTCCACCCA 1730
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1672 GATCGTAATGATAGAACCCGACAATTCACAACCAACAAAGTCCAAATCTGATTCCACCCA 1731
Query 1731 ACAACAATCTCAAAGCAGCTCCAGTGCTGATTCCAGCAAACTCAAGTCTAATGAGAAAGA 1790
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1732 ACAACAATCTCAAAGCAGCTCCAGTGCTGATTCCAGCAAACTTAAGTCTAATGAGAAAGA 1791
Query 1791 TGATGATGTATTCTCCGACAGTGATGGGGAAGAGGAAGGAAACTCAAAACCCATCGAGTC 1850
|| ||||||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 1792 CGACGATGTATTCTCTGACAGTGATGGGGAAGAGGAAGGAAACTC--------TC-AGTC 1842
Query 1851 TTATTCAACTACCGAGAAAACCTCA-GACTCAATGCACATAACTAGTAAACCTCATCAGA 1909
||||||||||| |||||||||| || | ||||||||||| ||||||||||||||||||||
Sbjct 1843 TTATTCAACTAACGAGAAAACCGCAAG-CTCAATGCACACAACTAGTAAACCTCATCAGA 1901
Query 1910 TCAATGAGCCACCTAAGAGAGATGATCCTTCCGCAAACAGAAGTGTCACAAGTTC--C-T 1966
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 1902 TCAATGAGCCACCAAAGAGAGATGACCCTTCCGCAAACAGAAGTGTCACAAGTTCATCGT 1961
Query 1967 C---GGGTCATTATAATCCAGTACCGAACGACTCATTAGCAGTTAGTGATATCAAAGCTA 2023
| |||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct 1962 CCTCGGGTCATTATAATCCAATACCAAACAACTCATTAGCAGTTAGTGATATCAAAGCTA 2021
Query 2024 TTGCTGCAGACGCATCCGTCTTCTCCTTTGGCGACGAGGAAGAAGACTATGAAAGCGACT 2083
|||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct 2022 TTGCTGCAGATGCATCGGTCTTCTCCTTTGGAGATGAGGAAGAAGACTATGAAAGCGACT 2081
Query 2084 GAGCTTGAA-ACTCAGGTTTTATCACACTTATCATACACAAACAAGTA 2130
|| | |||| |||||| ||||||||||||||||||||||| |||||||
Sbjct 2082 GATCATGAAGACTCAGATTTTATCACACTTATCATACACACACAAGTA 2129
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105621946680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5