BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485378
Length=1959
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50230.1 | Symbols: | Leucine-rich repeat protein kinase fa... 2743 0.0
> AT3G50230.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr3:18620599-18623200 FORWARD LENGTH=1983
Length=1983
Score = 2743 bits (1485), Expect = 0.0
Identities = 1820/1978 (92%), Gaps = 38/1978 (2%)
Strand=Plus/Plus
Query 6 ACTCTTCTTCTAC-TCTCTTCTCTTCCTCCTCCGTATCTCCGCCGCAAACTCCCTCCCAG 64
|||| |||||| | || |||||| ||||||||||||||||| |||| ||| ||||| |
Sbjct 20 ACTC-TCTTCT-CTTC-CTTCTCCTCCTCCTCCGTATCTCCACCGC---CTCTCTCCCGG 73
Query 65 CGACGAACTACTTCGACTCCTTCTTACCTTCCGACGCCGTCGCACTTCTCTCCTTCAAAT 124
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 74 CGACGAACTACTTCGACTCCTTCTTACCATCCGACGCCGTCGCACTTCTCTCCTTCAAAT 133
Query 125 CCACCGCTGATCTCGACAACAAGCTTCTATACTCTCTCACCGAGCCTTACGATTACTGTC 184
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 134 CCACCGCTGATCTCGACAACAAGCTTCTATACTCTCTCACCGAGCCTTACGACTACTGTC 193
Query 185 AATGGCGCGGCGTCGACTGCTCTCAAGATCGCGTCGTTCGTCTTATCCTCGACGGCGTTG 244
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 194 AATGGCGCGGCGTCGATTGCTCTCAAGATCGCGTCGTTCGTCTTATCCTCGACGGTGTTG 253
Query 245 GTCTCCGAGGACGTTTCTCACCGGAGACTCTTAGTCGTCTTGATCAGCTTCGTGTTCTTA 304
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 GTCTCCGGGGAAGTTTCTCACCGGAGACTCTTAGTCGTCTTGATCAGCTTCGTGTTCTTA 313
Query 305 GCCTTGTGAATAACTCAATCTCTGGTTCGGTTCCTGATCTATCTCCTTTAACCAATCTCA 364
|||||| ||||||||||||||| |||||| ||||||||||||||||| | ||||||||
Sbjct 314 GCCTTGAGAATAACTCAATCTCGGGTTCGATTCCTGATCTATCTCCTCTCGTCAATCTCA 373
Query 365 AAACCCTAACCCTAAGCAAGAACCGTTTCTCCGGTACTCTCTCTGGTTCGATTCTTTCTC 424
|||||||||||||||||||||| |||||||||||||||| ||| ||| ||||| ||||
Sbjct 374 AAACCCTAACCCTAAGCAAGAATGGTTTCTCCGGTACTCTTTCTTCTTCAATTCTCTCTC 433
Query 425 TTCGCCGGTTAGTC-GAACTTGATCTATCGTTTAACAACTTCGCCGGTGAGATTCCGTCG 483
|||| |||||| | ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 434 TTCGTCGGTTA-ACAGAACTTGATCTATCGTTTAACAACTTCTCCGGTGAGATTCCGTCG 492
Query 484 GAGATCAATGCTCTGAGTCGACTCATTTCTTTAAATCTCGAGTTTAATCGA-TTCAGTGG 542
| ||||||||||||||||||||||| ||||||||||||||||||||||||| || | ||
Sbjct 493 GGGATCAATGCTCTGAGTCGACTCAGTTCTTTAAATCTCGAGTTTAATCGACTT-AACGG 551
Query 543 TCCTCTCCCGCCGTTGAATCATTCTTCTATGACGTCGTTTAACGTTTCCGGTAACAATCT 602
||||||||||||| |||| ||||||| ||| || |||||||||||| ||||||| ||
Sbjct 552 AACTCTCCCGCCGTTAAATCTTTCTTCTCTGATTTCATTTAACGTTTCCAGTAACAACCT 611
Query 603 CACCGGTTTAGTTCCGGTT-ACAACGACTCTGTTACGATTCAACGCGTCTTCGTTTTCGT 661
||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 612 CACCGGTTTAGTTCC-GTTAACAAAGACTCTGTTACGATTCAACGCGTCTTCGTTTTCGT 670
Query 662 CAAACCCTGGACTCTGCGGTGAGATCATTAACCGATCTTGCGGTTCACGTTCTTCTTCTC 721
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 671 CAAACCCTGGACTCTGCGGTGAGATCATTAACCGATCTTGCGGTTTACATTCTTCTTCTC 730
Query 722 CATTCTTCGGTTCAACTAAACCAAACGCCACGTCAT---CA-----T-CTTCTTCGTCTC 772
| ||||| |||||| ||||||||||| ||||||||| || | |||||||||||
Sbjct 731 CGTTCTTTGGTTCACCTAAACCAAACACCACGTCATCAACATCTTCTGCTTCTTCGTCTG 790
Query 773 AAGCACCGATTAGTCAAAGCG---AGAACGGTGAAGCAGCGATGATTGTTCCACCGGTGG 829
|||||||| ||| |||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 791 AAGCACCGGTTATTCAAAGTGAACAGAACGGTGAAGCAGCGATGATTGTTCCACCGGTGG 850
Query 830 TTAAAAAGGTTAAAAATGGTTGGTTAGTACTTGGTTTCACCATTGGTCTCGCTTCTTTGA 889
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 851 TTAAAAAGGTTAAAAACGGTTGGTTAGTTCTTGGTTTCACCATTGGTCTCGCTTCTTTGA 910
Query 890 TAGTCCTCGGTCTTTGTCTCGTAGTGTTCTCGTTGTTTATGAAGAACCGGAGAGACTACG 949
|||| || ||||| || ||||| ||||||||||||||||| || ||||||||||| ||
Sbjct 911 TAGTTCTAGGTCTCTGCCTCGTCGTGTTCTCGTTGTTTATAAAAAACCGGAGAGAAGACT 970
Query 950 ACGATGACGTGATAATGACGCAACCTAAACGAGAAGAAGGAAACAAAGAAATCAAAATCC 1009
|||||||||||||||| ||||||||||| |||||||||| ||||||||||||||| ||||
Sbjct 971 ACGATGACGTGATAATTACGCAACCTAAGCGAGAAGAAGAAAACAAAGAAATCAAGATCC 1030
Query 1010 AATTCCAAACCACTGAGCCGTCGCCGCAAAAA-CGAATCTCAAGAAACGGAGATTTGATT 1068
|||| |||||||||| ||||||| || ||||| |||||| |||||||||||||||||||
Sbjct 1031 AATTTCAAACCACTGCGCCGTCGTCG-AAAAAGCGAATCCCAAGAAACGGAGATTTGATA 1089
Query 1069 TTCTGCGGC----GA--CGGAGGAGGAGTAGCTGTGTATACACTTGATCAGTTGATGAGA 1122
||||||||| || |||||||||| ||| |||| ||| |||| ||||||||||||
Sbjct 1090 TTCTGCGGCGAAGGAGGAGGAGGAGGAGAAGCAATGTACACAGTTGACCAGTTGATGAGA 1149
Query 1123 GCTTCTGCGGAGCTTTTTGGAAGAGGATCAGTAGGTACGACGTATAAAGCGGTGATGGTT 1182
||||| || |||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1150 GCTTCAGCAGAGCTTTTAGGAAGAGGATCAGTAGGTACAACGTATAAAGCGGTGATGGTT 1209
Query 1183 AATCAACTGATTGTGACGGTGAAGAGATTTGCTCCGTCGAAAACAGCGATTACTAGTGAT 1242
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1210 AATCAAATGATCGTGACGGTGAAGAGATTTGCTCCGTCGAAAACAGCGATTACTAGTGAT 1269
Query 1243 TTAGCGTTTGAGAATCAGATGGAGATAGTTGGTGGACTTAAGCATCCGAATCTTGTTCCG 1302
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 TTAGAGTTTGAGAATCAGATGGAGATAGTTGGTGGACTTAAGCATCCGAATCTTGTTCCG 1329
Query 1303 GTAAAAGCTTATTTTCAGTCAAATGGAGAGAGACTTGTCATCTATGAGTACCAACCTAAT 1362
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 GTTAAAGCTTATTTCCAGTCAAATGGAGAGAGACTTGTCATCTATGAGTACCAACCTAAT 1389
Query 1363 GGAAGTCTCTTCAATCTTATTCATGGTTCAAGAACATCAAAAGCTAAGCCATTACATTGG 1422
||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 1390 GGAAGTCTCTTCAATCTTATTCATGGTTCGAGAACATCAAAGGCAAAGCCATTACATTGG 1449
Query 1423 ACATCATGCTTGAAGATAGCAGAAGATGTGGCTCAAGCACTACATTATATTCACCAATCA 1482
|||||||| |||||||||||||||||||| ||||||||| ||||||| ||||||||||||
Sbjct 1450 ACATCATGTTTGAAGATAGCAGAAGATGTAGCTCAAGCATTACATTACATTCACCAATCA 1509
Query 1483 TCAGGAAAATTTCATGGAAACCTCAAGTCCACTAACATCCTCCTTGGTCACGACTTCGAA 1542
|||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1510 TCAGCCAAATTCCATGGAAACCTTAAGTCCACTAACATCCTCCTTGGTCACGACTTTGAA 1569
Query 1543 GCTTGTGTCACAGATTACTGTCTAAGTGTCTTAACAGACTCATCAG-TCCTCCCTAATGA 1601
||||||||||||||||| ||| |||||||||||||||||||||| | ||||||| |||||
Sbjct 1570 GCTTGTGTCACAGATTATTGTTTAAGTGTCTTAACAGACTCATCTGTTCCTCCC-AATGA 1628
Query 1602 CCCGGACATCTCTTCCTACAAAGCACCAGAGGTAAGGAAATCAATAGATAGTCGTCGTCC 1661
|||||||||||||||||| |||||||||||| |||||||||||| ||||| |||||||
Sbjct 1629 CCCGGACATCTCTTCCTATAAAGCACCAGAGATAAGGAAATCAACAGATA---GTCGTCC 1685
Query 1662 CACGTCCAAATGCGATGTGTACTCGTTCGGGGTCTTCCTCTTAGAGCTATTGACTGGTAA 1721
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1686 CACGTCGAAATGCGATGTTTACTCGTTCGGGGTCTTCCTCTTAGAGCTATTGACCGGTAA 1745
Query 1722 AACAGCTTCAAGACAACCGATTATGGAGCCAAACGATATGTTGGATTGGGTAAGAGCAAT 1781
||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1746 AACCGCTTCGAGGCAACCGATTATGGAGCCAAACGATATGTTGGATTGGGTAAGAGCAAT 1805
Query 1782 GAGGCAAGAAGAGGAAAGGTCAAAGGAAGAGAATGGGCTAGAGATGATGACTCAAACGGC 1841
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1806 GAGGCAAGAAGAAGAAAGGTCAAAGGAAGAGAATGGGCTAGAGATGATGACTCAAACGGC 1865
Query 1842 TTGTCTTTGTCGTGCAACATCGCCAGAGCAAAGGCCGACTATGAAAGAAGTGATCAAAAT 1901
||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1866 TTGTCTTTGCCGTGTAACATCGCCAGAGCAAAGGCCCACTATGAAAGAAGTGATCAAAAT 1925
Query 1902 GATTCAAGAGATTAAGGAGAGTGTTGTGATGACTGAAGAGAACGAAACTTTCCTCTGA 1959
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1926 GATTCAAGAGATTAAGGGGAGTGTTGTGATGACTGAAGAGAACGAAAAATTCCTCTGA 1983
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97037653485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5