BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485380
Length=807
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50260.1 | Symbols: CEJ1, ATERF#011, DEAR1 | cooperatively r... 911 0.0
> AT3G50260.1 | Symbols: CEJ1, ATERF#011, DEAR1 | cooperatively
regulated by ethylene and jasmonate 1 | chr3:18634576-18635398
FORWARD LENGTH=823
Length=823
Score = 911 bits (493), Expect = 0.0
Identities = 590/637 (93%), Gaps = 5/637 (1%)
Strand=Plus/Plus
Query 1 CTCTCTTCACATATATAAGAGAGTCCCTTGATCAAGAAATCAGATAATTTCCCTAATCCC 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||| || | |
Sbjct 1 CTCTCTTCACATATATAAGAGAGTCCCTTGATCAAGAAACCAGATAATTTCCCCAAACAC 60
Query 61 ACTTCTAAAGTCCTCCTCTTGGAAACCTAAGAGACTCAACTCCCGAGCCGCCATGGACGC 120
| ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 61 AATTCTAAAGTCCTCCTCTCGGAAA-GTAAGAGACTCAACTTCCGAGCCGCCATGGACGC 119
Query 121 CGGAGTAGCAGTAAAAGTTGACGTGGTAGGTGCAAGA--AAGAGAGAAAGACCATTCAAA 178
||||||||||||||||| |||||||| | || ||| | |||||||||||||||||||||
Sbjct 120 CGGAGTAGCAGTAAAAGCTGACGTGGCA-GT-CAAAATGAAGAGAGAAAGACCATTCAAA 177
Query 179 GGGATAAGGATGAGGAAATGGGGAAAATGGGTGGCGGAGATTCGAGAACCCAACAAGCGT 238
||||| || ||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 178 GGGATCAGAATGAGAAAATGGGGGAAATGGGTTGCGGAGATTCGAGAACCCAACAAGCGT 237
Query 239 TCAAGACTTTGGCTCGGCTCTTACTCTACTCCCGAAGCGGCTGCGCGTGCATACGACACG 298
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 238 TCAAGACTTTGGCTCGGCTCTTACTCTACTCCCGAAGCGGCGGCGCGTGCATACGACACG 297
Query 299 GCGGTGTTTTACCTCAGAGGGCCCACCGCTACGCTCAACTTCCCGGAGCTTCTGCCGTGT 358
|| || |||||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 298 GCTGTCTTTTACCTCAGAGGACCAACTGCTACGCTCAACTTCCCGGAGCTTCTGCCGTGT 357
Query 359 ACGTCCACTGAGGACATGTCAGCGGCCACGATCAGGAAAAAGGCGACGGAGGTCGGAGCT 418
|| ||| | ||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 358 ACCTCCGCCGAGGATATGTCAGCGGCAACGATCAGGAAAAAGGCGACGGAGGTGGGAGCT 417
Query 419 CAGGTAGATGCGATAGGGACGACGGTGGTTCAGAACAACAAACGCCGCCGTGTTTTTAGT 478
|| ||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||
Sbjct 418 CAAGTAGATGCGATAGGGGCGACGGTGGTGCAGAACAACAAACGCCGCCGCGTTTTTAGT 477
Query 479 CAAAAGCGTGACTTTGGCGGCGGATTATTAAAGCTTGTTGACTTGAACAAGCTACCCGAC 538
||||||||||||||||||||||| |||||| |||||||||||||||||||| |||| |||
Sbjct 478 CAAAAGCGTGACTTTGGCGGCGGGTTATTAGAGCTTGTTGACTTGAACAAGTTACCTGAC 537
Query 539 CCGGAAAATCTCGATGATGATTTGGTGGGAAAATAGACCGAAAAATAATaaaaaaaTATT 598
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 538 CCGGAAAATCTCGATGATGATTTGGTGGGAAAATAGACTGAAAAATAATAATAAAATATC 597
Query 599 TTACAACGGTGGCTGTTGCTATCGTACGCGGTATGCT 635
|||||| ||||||||| |||||||||||||| |||||
Sbjct 598 TTACAATGGTGGCTGTAGCTATCGTACGCGGAATGCT 634
Score = 171 bits (92), Expect = 1e-41
Identities = 148/172 (86%), Gaps = 16/172 (9%)
Strand=Plus/Plus
Query 636 AAGATTCCTCTGTTTCGTCATTGTATTAAAATTTAATCTCACAAGTCAAACACTTCTGTA 695
|||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||
Sbjct 668 AAGATTCCTCTGTTTCGTCATTGTATTAAAATTTAATCCCACAAGTCAAACA-TACTGTA 726
Query 696 CATTTTTCTTAATTTAGTAATTTCTTGTTAatatatatatatCTATCAATTGTTTGGTGA 755
|||| |||||||||||||| |||||| | | || |||| |||||| |||||||||||
Sbjct 727 CATTATTCTTAATTTAGTATTTTCTT---A-T-TA-ATAT--CTATCATTTGTTTGGTGA 778
Query 756 ACACTGAACACCAGAATATTAGACTATTAGTGTAACGAGTGTCTAATATTTC 807
|||| || |||||||||||||||| |||||||||| | |||||||||
Sbjct 779 ACAC----CA---GAATATTAGACTATTAATGTAACGAGTTTTTAATATTTC 823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39283102954
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5