BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485381
Length=1344
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50270.1 | Symbols: | HXXXD-type acyl-transferase family pr... 1908 0.0
> AT3G50270.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr3:18635920-18637341 FORWARD LENGTH=1422
Length=1422
Score = 1908 bits (1033), Expect = 0.0
Identities = 1246/1349 (92%), Gaps = 14/1349 (1%)
Strand=Plus/Plus
Query 6 AGGAGGGGTAGTTTTAGTCTCGTCGAGTATTGTTCGACCCGTAAGCAGCAGCCAATC-GG 64
||||||||||||||||||||| ||||| |||||||| || |||| |||||||||||| ||
Sbjct 15 AGGAGGGGTAGTTTTAGTCTCCTCGAGCATTGTTCGGCCAGTAAACAGCAGCCAATCTGG 74
Query 65 ATCGAACTAAGATCCATCTTACTCCATTTGATCTGAGTCTTCTTCAATTCGATTATCCTC 124
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 75 -TCGAACTAAGATCCATCTTACTCCATTTGATCTAAGTCTTCTTCAATTCGATTATCCTC 133
Query 125 AAAGAGGTCTTCTCTTCTCCAAACCCGACTCAGATTTCCATCTCATC-TCTC--GACTAA 181
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 134 AAAGAGGTCTTCTCTTCTCCAAACCCGACTCAGATTTCCATCTCATCATCTCTCGACTAA 193
Query 182 AGGCCTCTCTCGCTCTTGCCTTAGAGATTTACTTCCCTTTCGCGGGTAC-TCTCGTCAGA 240
| | ||||||| | || ||||| ||||| |||||||||||||||||| | |||||||| |
Sbjct 194 AAGACTCTCTCTCACTCGCCTTGGAGATCTACTTCCCTTTCGCGGGT-CGTCTCGTCAAA 252
Query 241 ACAGAGAATCTTGAAGACGATACGGTGTCGTTTTTCATAGACTGCGATGGTTCTGGCGCT 300
||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 253 ACAGAGAATCTTGAAGACGATACGGTGTCATTTTTCATAGACTGTGATGGCTCTGGCGCT 312
Query 301 AGATTTCTCCACGCCGAAGCTAAATCTGTCTCCGTGAGTGATTTTCTCCATCCTGATGGT 360
|||||||||||| ||||||| ||||||||||||||||||||| |||| || |||||||||
Sbjct 313 AGATTTCTCCACACCGAAGCAAAATCTGTCTCCGTGAGTGATATTCTTCAGCCTGATGGT 372
Query 361 TCTGTTCCTGATTTCATGAAGTACTTCTTTCCCGCCGATGATTTCAAGAGCTGTGATGGT 420
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 373 TCTGTTCCTGATTTCTTGAAGTACTTCTTTCCCGCCGACGATTTCAAGAGCTGTGATGGT 432
Query 421 GTCTCGGTGCCCTTGCTTGCTATCCAAGTTACCGAGATGACGGACGGAGTCTTCATCAGT 480
|||||| |||||||||||| ||| |||||||||||||||| ||||||||| |||||||||
Sbjct 433 GTCTCGTTGCCCTTGCTTGTTATACAAGTTACCGAGATGAAGGACGGAGTTTTCATCAGT 492
Query 481 TTCTGTTACAACCACATGGTGGCAGACGGTGTTTCCATGTGGAGTTTCTTCCACACTTGG 540
||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct 493 TTCTGTTACAACCACATGGTGGCAGACGGTGTTTCCATGTGGAGTTTTTTCGATACTTGG 552
Query 541 TCCAAGATTTGCTCAAGTGGTTCAGGTTTTAACCACAAGCCTCTTGTTCTCAAAGGATGG 600
|||||||||||||||| |||||| |||| || |||||||||||||||||||||| |||
Sbjct 553 TCCAAGATTTGCTCAACAGGTTCATGTTTCAATTACAAGCCTCTTGTTCTCAAAGGGTGG 612
Query 601 TTCCTCGAGGGGATCGATTACCCGATCCATATTCCGGTTTCGGAGACAGAGAGGTCACCA 660
||||| ||||||||||||||||| |||||| |||| ||||| ||| ||||||||||||||
Sbjct 613 TTCCTTGAGGGGATCGATTACCCAATCCATGTTCCAGTTTCAGAGGCAGAGAGGTCACCA 672
Query 661 CCAAGCCGTGAACTTTCCTCGGTGCCCATTACGAAAGAATGGAATTTTCACTTCTCAAAG 720
||||||||||||| ||| || |||||||||||||||||||||| |||||||||| |||||
Sbjct 673 CCAAGCCGTGAACCTTCTTCCGTGCCCATTACGAAAGAATGGATTTTTCACTTCACAAAG 732
Query 721 AAGAATATTAT-AGATCTCAAAGCTAAAGCCAACAGCGAGGTTGCCTCCAGT-G--ACAT 776
||||||||| | |||||||||||||||||||||||||||| ||||||||||| | || |
Sbjct 733 AAGAATATT-TCAGATCTCAAAGCTAAAGCCAACAGCGAGATTGCCTCCAGTAGTGACCT 791
Query 777 GGAAGTTTCATCTCTTCAAGTGGTTTCGGCACATATGTGGCGATCAATCATCAGACACAG 836
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 792 AGAAGTTTCATCTCTTCAAGCGGTTTCGGCACATATGTGGCGATCAATCATCAGACACAG 851
Query 837 TGGTGTGAGCCGAGAACGAGAGACACATTGCAAACTAGTGGTGGACTTGAGGCAGAGGGT 896
||||||||||||||||| | |||||||||||| ||||||||||||||||||||| || ||
Sbjct 852 TGGTGTGAGCCGAGAACAAAAGACACATTGCAGACTAGTGGTGGACTTGAGGCAAAGAGT 911
Query 897 AAATCCTCCGCTTGAGAAAGATTGTTTTGGGAATATGGTCTATCTTACATCAGCCATAAC 956
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 912 AAATCCACCGCTTGAGAAAGATTGTTTTGGGAATATGGTCTATCTTTCATCAGCCATAAC 971
Query 957 CACCGCGGAAGAGCTCTTAGATCGCGGCTTGGGTGAGGCTGCTTTGCAAATAAGAAAATT 1016
||||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 972 CACCGTGGAAGAGCTCTTGGATCGTGGTTTGGGTGAGGCTGCTTTGCAAATAAGAAAATT 1031
Query 1017 AGTGAGCTCGCAAACGAATGAAACTTGTAAAAGTTTTGCAGAGGATTGGGTTAGAAATGT 1076
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1032 AGTTAGCTCGCAAACGAATGAAACTTGTAAAAGTTTTGCAGAAGATTGGGTTAGAAATAT 1091
Query 1077 TAAGAACCTAAAATCAGGTATTGGTAGTAAAGTAGGTGATACTATAGTTGTCGCAAGCTC 1136
|||||||||||| ||||| ||||| |||||||||||| ||||||||||| ||||||||||
Sbjct 1092 TAAGAACCTAAATTCAGGCATTGGCAGTAAAGTAGGTAATACTATAGTTATCGCAAGCTC 1151
Query 1137 TCCACGGTTCGACGTGTACAACAAAGATTTCGGTTGGGGCAAACCTCTTGCAATTCGAGC 1196
||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1152 TCCGCGGTTCGAGGTGTACAACAAAGATTTCGGTTGGGGCAAACCTATTGCAATTCGAGC 1211
Query 1197 TGGACCGTCCAATAGTATCAGTGGAAAACTTTCACTTTTTCAGGGAATCAATGAAGGAAG 1256
|||||| ||||||||||||| ||| || |||||| ||||||||||||||| |||||||||
Sbjct 1212 TGGACCATCCAATAGTATCAATGGCAAGCTTTCAGTTTTTCAGGGAATCAGTGAAGGAAG 1271
Query 1257 TATTGATATTCAAGCAA-CATTATGGGAAGATGTAATAGTGAAACTACTAGCCGATGTGG 1315
||||||| ||||||||| | | ||||| ||||||||||||||||||||||| ||| |||
Sbjct 1272 TATTGATGTTCAAGCAATCCT-ATGGGGTGATGTAATAGTGAAACTACTAGCTGATTTGG 1330
Query 1316 AATTTTTAGAGCATGTAACTACTGCATGA 1344
||||||||||||||||||||| |||||||
Sbjct 1331 AATTTTTAGAGCATGTAACTATTGCATGA 1359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66164318310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5