BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485384 Length=1042 Score E Sequences producing significant alignments: (Bits) Value AT3G50330.1 | Symbols: HEC2 | basic helix-loop-helix (bHLH) DNA... 1530 0.0 > AT3G50330.1 | Symbols: HEC2 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:18657208-18658307 REVERSE LENGTH=1100 Length=1100 Score = 1530 bits (828), Expect = 0.0 Identities = 958/1020 (94%), Gaps = 12/1020 (1%) Strand=Plus/Plus Query 30 TCTGTGATTCAGACACACAAAACCCTAAATTTCAAGGTTTGTCAGTCCATCTTCTTCTTC 89 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 53 TCTGTGATTCAGACACACAAAGCCCTAAATTTCAAGCTTTGTCAGTCCATCTTCTTCTTC 112 Query 90 CTCCATACCTTATCTCACCAGCTTCTCCATATTCTCTCAAAG-GAAAACAAACCCTATAA 148 ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| Sbjct 113 CTCCATACCTTATCTCACCAGCTTCTCCATA-TCTCTCAAAGAAAAAACAAACCCTATAA 171 Query 149 ATTCCACAAAAAAGGAGGATGGATAACTCCGACATTTTGATGAACATGATGATGCAGCAG 208 |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 172 ATTCCACAAAAAAGGAGGATGGATAACTCCGACATTCTAATGAACATGATGATGCAGCAG 231 Query 209 ATGGAGAAGCTTCCGGAACACTTCTCTAACTCAAACCCTAACCCTAATTCCCATAACATT 268 |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 232 ATGGAGAAGCTTCCTGAACACTTCTCTAACTCAAACCCTAACCCTAATCCCCATAACATT 291 Query 269 ATGATGCTCTCAGAATCCAACACCCACCCTTTCTTCTTCAACCCCACTCATACTCATCTC 328 |||||||| || ||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 292 ATGATGCTTTCTGAATCCAACACCCACCCGTTCTTCTTCAACCCCACTCATTCTCATCTC 351 Query 329 CCATTTGACCAAACCAT-CTCTCACCACCAACCCGGTTTAAGTTTCCGGTACGCTCCCTC 387 ||||||||||||||||| | ||||||||||||||||||||| |||||||||||| ||||| Sbjct 352 CCATTTGACCAAACCATGC-CTCACCACCAACCCGGTTTAAATTTCCGGTACGCCCCCTC 410 Query 388 CACGTCATCATCTCTCCCGGATAAGAGAGGAGGCTGCAGCGACAACGCCAACATGGCGGC 447 | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 411 CCCGTCATCATCTCTCCCGGAGAAGAGAGGAGGCTGCAGCGACAACGCCAACATGGCGGC 470 Query 448 GATGAGAGAGATGATCTTTCGAATAGCCGTGATGCAGCCTATACATATTGATCCGGAATC 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 471 GATGAGAGAGATGATCTTTCGAATAGCCGTGATGCAGCCTATACATATTGATCCGGAATC 530 Query 508 CGTGAAGCCGCCGAAGAGAAAGAACGTGAGGATCTCAAAGGACCCACAGAGCGTTGCTGC 567 ||| ||||| || ||||||||||||||||||||||| ||||| ||||||||||| || || Sbjct 531 CGTAAAGCCACCAAAGAGAAAGAACGTGAGGATCTCTAAGGATCCACAGAGCGTGGCAGC 590 Query 568 TAGACATAGAAGGGAGAGGATAAGCGAGCGGATTCGGATTCTTCAGCGGCTTGTACCTGG 627 | | ||| |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 591 TCGGCATCGAAGGGAGAGGATAAGCGAGCGGATTCGGATTCTTCAGCGGCTTGTTCCCGG 650 Query 628 TGGGACTAAGATGGATACGGCATCGATGCTCGATGAGGCTATCCATTACGTTAAGTTTCT 687 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 651 TGGGACTAAGATGGATACGGCGTCGATGCTCGATGAGGCTATCCATTACGTTAAGTTTCT 710 Query 688 CAAGAAGCAAGTGCAGTCGCTGGAGGAACATGCGGTGGTTAACGGCGGAGGAATGACGGC 747 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 711 CAAGAAGCAAGTGCAGTCGCTGGAGGAACATGCGGTGGTTAACGGCGGAGGAATGACGGC 770 Query 748 GGTGGCCGGAGGAGCACTGGCGGGGACTGTTGGTGGAGGATATGGAGGAAAAGGGTGTGG 807 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 771 GGTGGCCGGAGGAGCACTTGCGGGTACTGTTGGTGGAGGATATGGAGGAAAAGGGTGTGG 830 Query 808 GACTATGCGGTCTGATCATCACCAGATGCTTGGAAATGCACAGATTCTTAgatgatgatg 867 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 831 CATTATGCGGTCTGATCATCACCAGATGCTTGGAAATGCACAGATTCTTAGATGATGATG 890 Query 868 atgatgatgatgaATTTTAAAT-ATATATCATATTAATATGCCGG-AAACAAATATTATC 925 ||| |||| | || | || || |||| | |||||||||| ||| ||| |||||||||| Sbjct 891 ATGTTGATTTTTAAATATATATCATATGTT-TATTAATATGACGGGAAA-AAATATTATC 948 Query 926 GAAGGGAGTTAAATTTAGTGTCATGAAACTCTGAGAGTATTTTA---AAATGTCTTTATC 982 || ||||||| |||||||| |||||||||| |||||| ||||| |||||| |||||| Sbjct 949 GA-GGGAGTTGAATTTAGTATCATGAAACTATGAGAGCATTTTTTTTAAATGTTTTTATC 1007 Query 983 TTTCCGGGTTTCGATAATGTTTGGGATGGTTAGTTAACAATTTTAAAGTCAGACAACTTG 1042 |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| Sbjct 1008 TTTCCGGGTTTCGATAATGTTTGGGATGGTTAATTAACAATTTAAAAGTCAGACAACTTG 1067 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51088127499 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5