BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485384
Length=1042
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50330.1 | Symbols: HEC2 | basic helix-loop-helix (bHLH) DNA... 1530 0.0
> AT3G50330.1 | Symbols: HEC2 | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:18657208-18658307 REVERSE
LENGTH=1100
Length=1100
Score = 1530 bits (828), Expect = 0.0
Identities = 958/1020 (94%), Gaps = 12/1020 (1%)
Strand=Plus/Plus
Query 30 TCTGTGATTCAGACACACAAAACCCTAAATTTCAAGGTTTGTCAGTCCATCTTCTTCTTC 89
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 53 TCTGTGATTCAGACACACAAAGCCCTAAATTTCAAGCTTTGTCAGTCCATCTTCTTCTTC 112
Query 90 CTCCATACCTTATCTCACCAGCTTCTCCATATTCTCTCAAAG-GAAAACAAACCCTATAA 148
||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 113 CTCCATACCTTATCTCACCAGCTTCTCCATA-TCTCTCAAAGAAAAAACAAACCCTATAA 171
Query 149 ATTCCACAAAAAAGGAGGATGGATAACTCCGACATTTTGATGAACATGATGATGCAGCAG 208
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 172 ATTCCACAAAAAAGGAGGATGGATAACTCCGACATTCTAATGAACATGATGATGCAGCAG 231
Query 209 ATGGAGAAGCTTCCGGAACACTTCTCTAACTCAAACCCTAACCCTAATTCCCATAACATT 268
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 232 ATGGAGAAGCTTCCTGAACACTTCTCTAACTCAAACCCTAACCCTAATCCCCATAACATT 291
Query 269 ATGATGCTCTCAGAATCCAACACCCACCCTTTCTTCTTCAACCCCACTCATACTCATCTC 328
|||||||| || ||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 292 ATGATGCTTTCTGAATCCAACACCCACCCGTTCTTCTTCAACCCCACTCATTCTCATCTC 351
Query 329 CCATTTGACCAAACCAT-CTCTCACCACCAACCCGGTTTAAGTTTCCGGTACGCTCCCTC 387
||||||||||||||||| | ||||||||||||||||||||| |||||||||||| |||||
Sbjct 352 CCATTTGACCAAACCATGC-CTCACCACCAACCCGGTTTAAATTTCCGGTACGCCCCCTC 410
Query 388 CACGTCATCATCTCTCCCGGATAAGAGAGGAGGCTGCAGCGACAACGCCAACATGGCGGC 447
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 411 CCCGTCATCATCTCTCCCGGAGAAGAGAGGAGGCTGCAGCGACAACGCCAACATGGCGGC 470
Query 448 GATGAGAGAGATGATCTTTCGAATAGCCGTGATGCAGCCTATACATATTGATCCGGAATC 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 GATGAGAGAGATGATCTTTCGAATAGCCGTGATGCAGCCTATACATATTGATCCGGAATC 530
Query 508 CGTGAAGCCGCCGAAGAGAAAGAACGTGAGGATCTCAAAGGACCCACAGAGCGTTGCTGC 567
||| ||||| || ||||||||||||||||||||||| ||||| ||||||||||| || ||
Sbjct 531 CGTAAAGCCACCAAAGAGAAAGAACGTGAGGATCTCTAAGGATCCACAGAGCGTGGCAGC 590
Query 568 TAGACATAGAAGGGAGAGGATAAGCGAGCGGATTCGGATTCTTCAGCGGCTTGTACCTGG 627
| | ||| |||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 591 TCGGCATCGAAGGGAGAGGATAAGCGAGCGGATTCGGATTCTTCAGCGGCTTGTTCCCGG 650
Query 628 TGGGACTAAGATGGATACGGCATCGATGCTCGATGAGGCTATCCATTACGTTAAGTTTCT 687
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 651 TGGGACTAAGATGGATACGGCGTCGATGCTCGATGAGGCTATCCATTACGTTAAGTTTCT 710
Query 688 CAAGAAGCAAGTGCAGTCGCTGGAGGAACATGCGGTGGTTAACGGCGGAGGAATGACGGC 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 CAAGAAGCAAGTGCAGTCGCTGGAGGAACATGCGGTGGTTAACGGCGGAGGAATGACGGC 770
Query 748 GGTGGCCGGAGGAGCACTGGCGGGGACTGTTGGTGGAGGATATGGAGGAAAAGGGTGTGG 807
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 771 GGTGGCCGGAGGAGCACTTGCGGGTACTGTTGGTGGAGGATATGGAGGAAAAGGGTGTGG 830
Query 808 GACTATGCGGTCTGATCATCACCAGATGCTTGGAAATGCACAGATTCTTAgatgatgatg 867
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 CATTATGCGGTCTGATCATCACCAGATGCTTGGAAATGCACAGATTCTTAGATGATGATG 890
Query 868 atgatgatgatgaATTTTAAAT-ATATATCATATTAATATGCCGG-AAACAAATATTATC 925
||| |||| | || | || || |||| | |||||||||| ||| ||| ||||||||||
Sbjct 891 ATGTTGATTTTTAAATATATATCATATGTT-TATTAATATGACGGGAAA-AAATATTATC 948
Query 926 GAAGGGAGTTAAATTTAGTGTCATGAAACTCTGAGAGTATTTTA---AAATGTCTTTATC 982
|| ||||||| |||||||| |||||||||| |||||| ||||| |||||| ||||||
Sbjct 949 GA-GGGAGTTGAATTTAGTATCATGAAACTATGAGAGCATTTTTTTTAAATGTTTTTATC 1007
Query 983 TTTCCGGGTTTCGATAATGTTTGGGATGGTTAGTTAACAATTTTAAAGTCAGACAACTTG 1042
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1008 TTTCCGGGTTTCGATAATGTTTGGGATGGTTAATTAACAATTTAAAAGTCAGACAACTTG 1067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51088127499
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5