BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485385
Length=1469
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50340.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2364 0.0
AT5G67020.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 846 0.0
> AT3G50340.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G67020.1);
Has 128 Blast hits to 128 proteins in 39 species: Archae -
0; Bacteria - 46; Metazoa - 0; Fungi - 3; Plants - 76; Viruses
- 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr3:18665094-18666672
REVERSE LENGTH=1579
Length=1579
Score = 2364 bits (1280), Expect = 0.0
Identities = 1414/1478 (96%), Gaps = 12/1478 (1%)
Strand=Plus/Plus
Query 1 TCTCTCTCGCCTATTATCTTTTT-CAGTTCGCTATCAGACATATCTGAAACCCCATAACT 59
|||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1 TCTCTCTCGCCTATCATCTTTTTCCAGTTCGCTATCAGACATATTTGAAACCCCATAACT 60
Query 60 CATAAAGCTTCACTCTTTTCCAC-ATCTCTTACTCCAAAGTTTTGATC-TT-GTCCCaaa 116
||||||||||||||||||||||| |||||||||||||||||||| || || ||||||
Sbjct 61 CATAAAGCTTCACTCTTTTCCACAATCTCTTACTCCAAAGTTTTCTTCTTTCCCCCCAAA 120
Query 117 aaaaaaaaaTGGTCGACGTTGATCGGAGAATGACCGGTCTCAGACCAGCTCACGCCGCGG 176
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 AAATTATAATGGTCGACGTTGATCGGAGAATGACCGGTCTCAGACCAGCTCACGCCGCTG 180
Query 177 GTCTCCGTCGTCTCTCTGCTCGCGCCGCCGCACCAACGACTCCAACGGTTAGAAACAGCC 236
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 181 GTCTCCGTCGTCTCTCTGCTCGCGCCGCCGCACCAACAACACCAACGGTTAGAAACAGTC 240
Query 237 TCGTCTCTTTCTCATCTCTCGCCGAACAAGTAATCTCACACTTACACACTTCAAGGATCC 296
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 TCGTCTCTTTCTCTTCTCTCGCCGATCAAGTAATCTCACACTTACACACTTCAAGGATCC 300
Query 297 AAGTCCAACCGGGTCTAACCGACTCCGAATTCGCCAAAGCCGAAGCAGAGTTCGCATTCT 356
|||||||||||||||||||||||||||||||||| | ||| ||||||||||| ||||||
Sbjct 301 AAGTCCAACCGGGTCTAACCGACTCCGAATTCGCTAGAGCAGAAGCAGAGTTTGCATTCG 360
Query 357 CTTTCCCACCGGACCTCCGTGCAGTTCTCACCGCCGGTTTACCAGTCGGCGCCGGGTTTC 416
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 361 CTTTTCCACCGGACCTCCGTGCTGTTCTCACCGCCGGTTTACCAGTCGGCGCCGGATTTC 420
Query 417 CAGACTGGCGTTCTCCCGGAGCTCGTCTTCATCTTAGGGCTATGATCGATCTTCCTATCG 476
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 421 CAGACTGGCGTTCTCCCGGAGCTCGTCTTCATCTCAGAGCTATGATCGATCTTCCTATCG 480
Query 477 CCGCCGTGTCGTTTCAGATCGCGAGAAACACTCTTTGGAGCAAATCTTGGGGTTTAAGAC 536
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 481 CCGCCGTGTCGTTTCAGATCGCGAGAAACACTCTCTGGAGCAAATCTTGGGGTTTAAGAC 540
Query 537 CATCCGACCCGGAAAAAGCTTTACGGGTCGCGAGAAATGCTCTCAAAAGAGCTCCTTTGA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CATCCGACCCGGAAAAAGCTTTACGGGTCGCGAGAAATGCTCTCAAAAGAGCTCCTTTGA 600
Query 597 TGATACCAATCTTTGATCACTGCTATATTCCTTGTAACCCGTCTTTAGCGGGTAACCCGG 656
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGATACCAATCTTTGATCATTGCTATATTCCTTGTAACCCGTCTTTAGCGGGTAACCCGG 660
Query 657 TTTTTTATATTGACGAGACCCGGATTTTCTGTTGCGGGTCGGATCTATCTGATTTCTTCG 716
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 661 TTTTTTATATTGACGAGACCCGGATTTTCTGTTGCGGGTCGGATCTTTCTGATTTCTTCG 720
Query 717 AGCGTGAGTCTGTGTTTAGAGGGTCTGACACGTGTCCGGTTGTTTTAACGAAGCAGCGTT 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGCGTGAGTCTGTGTTTAGAGGGTCTGACACGTGTCCGGTTGTTTTAACGAAGCAGCGTT 780
Query 777 CGGTGAGTGAGAAATCAGCTGGGTCGTCGTCGTCTTCTTCGTCGAATTTTTCAAGAATGA 836
||||||||||||||||||| |||||||||||||||||||| || |||||||| |||||||
Sbjct 781 CGGTGAGTGAGAAATCAGCCGGGTCGTCGTCGTCTTCTTCATCAAATTTTTCGAGAATGA 840
Query 837 GTTTAGATTCGGGTCAGGTTCACGGGTCGAGTACACCGAGATGGGTTGAGTTTTGGAGTG 896
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GTTTAGATTCGGGTCGGGTTCACGGGTCGAGTACACCGAGATGGGTTGAGTTTTGGAGTG 900
Query 897 ACGCGACCGTGGATCGTCGGAGGAGAAACTCTGCTTCTTCTATGTCGTCGTCACACTCTT 956
||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ACGCGGCGGTTGATCGTCGGAGGAGAAACTCTGCTTCTTCTATGTCGTCGTCACACTCTT 960
Query 957 CATCGCCGGAGAGATATCTAGAATTACCAAGATCCGAGACACCGAAATGGGTCGACGATT 1016
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 961 CATCGCCGGAGAGATATTTAGATTTACCAAGATCCGAGACACCGAAATGGGTCGACGATT 1020
Query 1017 ACGTGAACCGGATCGGGTCGGTTTTAAGAGGAGGCGGGTGGAGCGAATCCGACGTTGATG 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ACGTGAACCGGATCGGGTCGGTTTTAAGAGGAGGCGGGTGGAGCGAATCCGACGTTGATG 1080
Query 1077 ATATTGTCCACGTGTCAGCATCTGGTTTCTTTGAGGGTGAAATGGTAATTTTAGATAATC 1136
||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1081 ATATTGTACACGTGTCAGCATCTGGTTTTTTTGAGGGTGAAATGGTAATTTTGGATAATC 1140
Query 1137 AAGCGGTT-TTAGATGCATTGCTTTTGAAAGCGGGTCGGTTCTCGGAGTCGCTCCGAAAA 1195
|||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AAGCCGTTCTT-GATGCATTGCTTTTGAAAGCGGGTCGGTTCTCGGAGTCGCTCCGAAAA 1199
Query 1196 GCTGGATGGAGCTCCGAAGAAGTATCGGATGCACTTGGTTTTGATTTTCGACCGGAGAAG 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GCTGGATGGAGCTCCGAAGAAGTATCGGATGCACTTGGTTTTGATTTTCGACCGGAGAAG 1259
Query 1256 GGGAAGAAACCGGTGAAGAAGCTATCTCCTGAACTTGTCCAACGAATCGGGAAACTTGCT 1315
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GAGAAGAAACCGGTGAAGAAGCTATCTCCTGAACTTGTCCAACGAATCGGGAAACTTGCT 1319
Query 1316 GAGTCGGTTTCTCGGTCATGATTATTA--CCC-GATCGAGATTCTTTAAACTTCTAATTA 1372
||||||||||||||||||||||||||| ||| |||||||||||||| |||| ||||||
Sbjct 1320 GAGTCGGTTTCTCGGTCATGATTATTATTCCCCGATCGAGATTCTTTTCACTTTTAATTA 1379
Query 1373 CCCCTCAAAAGAATACATTTATTATAAA-AACACACCATTAGATTTTAACGTTTTCAAAA 1431
||||||| ||||| ||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1380 GACCTCAAAC-AATACGTTTATTAAAAACAACACACCATTAGATTTTAACGTTTTCAAAA 1438
Query 1432 AAGTCTAAATATGTGTAATCTTGCATTTGTTATTAGAA 1469
| ||||||||||||||||||||||||| ||||||||||
Sbjct 1439 A-GTCTAAATATGTGTAATCTTGCATTCGTTATTAGAA 1475
> AT5G67020.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G50340.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:26749850-26751249 FORWARD LENGTH=1400
Length=1400
Score = 846 bits (458), Expect = 0.0
Identities = 996/1244 (80%), Gaps = 83/1244 (7%)
Strand=Plus/Plus
Query 121 aaaaaTGGTCGACGTTGATCGGAGAATGACCGGTCTCAGACCAGCTCACGCCGCGGGTCT 180
||| |||||||||||||| ||||||||||||||| | | || |||||||| || |||||
Sbjct 109 AAACATGGTCGACGTTGACCGGAGAATGACCGGTTTGACTCCGGCTCACGCAGCCGGTCT 168
Query 181 CCGTCGTCTCTCTGCTCGCGCCGCCGCACCAACGACTCCAACGGTTAGAAACAGCC-TCG 239
||| |||||||| |||||||||||||| ||| | ||||| ||| | |||||||||| ||
Sbjct 169 CCGCCGTCTCTCAGCTCGCGCCGCCGCTCCATCCACTCCTACGATCAGAAACAGCCTTC- 227
Query 240 TCTCTTTCTCATCTCTCGCCGA-ACAAGTAATCTCA-CA-CTTACACACTTCAAGG-ATC 295
|||||||| || ||||||| | |||||||| | || |||| | | ||| ||| |||
Sbjct 228 AATCTTTCTCCCCTTTCGCCGATA-AAGTAATC-AATCATCTTA-AAAATTC-AGGTATC 283
Query 296 CAAGTCCAACCGGGTCTAACCGACTCCGAATTCGCCAAAGCCGAAGCAGAGTTCGCATTC 355
|| ||||||| ||||| ||||| |||| || ||| || |||||| ||||| | |||
Sbjct 284 AAAATCCAACCAGGTCTCTCCGACACCGAGTTTGCCCGAGTCGAAGCCGAGTTTGGTTTC 343
Query 356 TCTTTCCCACCGGACCTCCGTG-CAGTTCTCACCGCCGGT-T-TACCAGTCGGCGCCGGG 412
| ||||||||||||||||||| | | ||| |||||||| | | || |||||||| ||
Sbjct 344 ACCTTCCCACCGGACCTCCGTGTTA-TCCTCTCCGCCGGTCTCT-CC-GTCGGCGCAGGA 400
Query 413 TTTCCAGACTGGCGTTCTCCCGGAGCTCGTCTTCATCTTAGGGCTATGATCGATCTT-CC 471
|| ||||||||||||||||||||||||||||| || || | || ||||||||| || ||
Sbjct 401 TTCCCAGACTGGCGTTCTCCCGGAGCTCGTCTCCACCTCCGTGCCATGATCGAT-TTACC 459
Query 472 TA-TCGCCGCCGTGTCGTTTCAGATCGCGAGAAACACTCTTTGGAGCAAATCTTGGGG-T 529
| ||||||| || ||||| || ||||| | ||||| ||| ||| ||||||||||||| |
Sbjct 460 -AGTCGCCGCTGTATCGTTCCAAATCGCTAAAAACAGTCTCTGGTGCAAATCTTGGGGCT 518
Query 530 TTAAGACCATCCGACCCGGAAAAAGCTTTACGGGTCGCGAGAAATG-CTCTCAAAAGAGC 588
| || |||| |||||||||||||||||||| ||||||||||||| | || | ||||||||
Sbjct 519 TGAA-ACCACCCGACCCGGAAAAAGCTTTAAGGGTCGCGAGAAACGCCT-TAAAAAGAGC 576
Query 589 TCCTTTGA-TGATACCAATCTTTGATCACTGCTATATTCCTTGTAACCCGTCTTTAGCGG 647
|||||| | |||| || ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 577 TCCTTT-ACTGATTCCCATCTTTGATCACTGCTACATTCCTTGTAACCCGTCTTTAGCTG 635
Query 648 GTAACCCGGTTTT-TTATATTGACGAGACCCGGATTTTCTGTTGCGGGTCGGATCTATCT 706
|||| |||||||| || || |||||||| ||||| |||||||||||||||||||||||
Sbjct 636 GTAATCCGGTTTTCTTC-ATCGACGAGACTCGGATCTTCTGTTGCGGGTCGGATCTATCC 694
Query 707 GATTTCTTCGAGCGTGAGTCTG-TGTTTAGAGGGTCTGACACGTGT-CCGGTTGT-TT-T 762
|| |||||||||||||| |||| | ||| || | ||||| | | | || | | || |
Sbjct 695 GAGTTCTTCGAGCGTGAATCTGCT-TTTCGAAGCTCTGA-AT-TCTTCCCGA-GAATTCT 750
Query 763 AACGAAGCAGCGTTCGGTGAGTGAGAAATCAGCTGGGTCGTCGTCGTCTTCTTCGTCGAA 822
|| ||||| ||||| ||||| |||||||||||||| || || | || | ||
Sbjct 751 CACTAAGCAACGTTCAGTGAGCGAGAAATCAGCTGGATCATC--C-TC------G---AA 798
Query 823 TTTTTCAAGAATGA-GTTTAGATTCGGGTCAGGTTCACGG-GTCGAGTACAC-CGAGATG 879
|||||| | | || | ||||||| ||||| || | | || | || ||| | |||||||
Sbjct 799 TTTTTCCCGGA-GAAGCTTAGATTTGGGTCGGGCTAATGGTG-CGGGTA-AGTCGAGATG 855
Query 880 GGTTGAGTTTTGGAGTGACGCGACCGTGGATCGTCGGAGGAGAAACTCTGCTTCTTCTAT 939
|||||||||||||||||||||| | || |||||| | || |||||||||| || | ||
Sbjct 856 GGTTGAGTTTTGGAGTGACGCGGCGGTTGATCGTTGCCGGCGAAACTCTGCCTCCAC-AT 914
Query 940 G-TCGTCGTCACACTCTTCATCGCCGGAGAGATATCTAGAATTACCAAGATCCGAGACAC 998
|||||||| |||||||||||||| | || |||| | | ||||| |
Sbjct 915 CATCGTCGTCT---TCTTCATCGCCGGACC--T-TC--------CCAAAA-CAGAGACTC 959
Query 999 CGAAATGGGTCGA-CGATTACGTGAACCGGATCGGGTCGGTTTTAAGAGGAGGCGGGTGG 1057
|||||||||| || | | ||||| ||||||||||| |||||||||||| |||||||||||
Sbjct 960 CGAAATGGGT-GAACCAGTACGTAAACCGGATCGGTTCGGTTTTAAGAAGAGGCGGGTGG 1018
Query 1058 AGCGAATCCGACGTTGATGATATTGTCCACGTGTCAGCATCTGGTTTCTTTGAGGGTGAA 1117
||||||||||| ||||||| ||| |||||||||||||||| |||||||||||||| |||
Sbjct 1019 AGCGAATCCGATATTGATGAGATTATCCACGTGTCAGCATCGGGTTTCTTTGAGGGCGAA 1078
Query 1118 ATGGTAATTTTAGATAATCAAGCGGTT-TTAGATG--CATTGCTTTTGAAAGCGGGTCGG 1174
||||||||| | ||||||||| | ||| || |||| | || || || ||||||||||||
Sbjct 1079 ATGGTAATTATCGATAATCAAACTGTTCTT-GATGTGC-TT-CTATTAAAAGCGGGTCGG 1135
Query 1175 TTCTCGGAGTCGCTCCGAAAAGCTGGATGGAGCTCCGAAGAAGTATCGGATGCACTTGGT 1234
|||| ||||||||||| ||| | || ||||||||||||||||| ||||| || |||||
Sbjct 1136 ATCTCAGAGTCGCTCCGTAAATCCGGGTGGAGCTCCGAAGAAGTCTCGGACGCGCTTGGG 1195
Query 1235 TTTGATTTTCGACCGGAGAAGGGGAAGAAACCGGTGAAGAAGCTATCTCCTGAA-CTTGT 1293
||||||||||||||||| |||| || ||||||||| ||||| || || ||| | || ||
Sbjct 1196 TTTGATTTTCGACCGGAAAAGGAGAGGAAACCGGTTAAGAAACTCTCGCCT-ATGCTCGT 1254
Query 1294 CCAACGAAT-CGGGAAACTTGCTGAGTCGGTTTCTCGGTCATGA 1336
| ||| ||| || ||||||||||| | |||||||| |||||||
Sbjct 1255 CGAAC-AATTCGAAAAACTTGCTGAATGGGTTTCTCAGTCATGA 1297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72439386435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5