BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg485386

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G50350.1 | Symbols:  | Protein of unknown function (DUF1685)...   767    0.0  


> AT3G50350.1 | Symbols:  | Protein of unknown function (DUF1685) 
| chr3:18672906-18673706 FORWARD LENGTH=546
Length=546

 Score =  767 bits (415),  Expect = 0.0
 Identities = 461/484 (95%), Gaps = 0/484 (0%)
 Strand=Plus/Plus

Query  1    ATTGATCGTAAAACCTTTCCACCACCGCACACCCCCTCGCCGGGGGTAGTGCGTCGCCTC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct  28   ATTGATCGTAAAACCTTTCCACCACCGCACACCCCCTCGCCGGGGGTAGTGCGTCGCATA  87

Query  61   CACGCGCCGCCGTTATCTTCTACTTCACTCCTGAAACAACACTCGTGGTCTCCGGATCTA  120
            |||||||| |||||| |||||||||| ||| |||| ||||||||||||||||| ||||||
Sbjct  88   CACGCGCCACCGTTACCTTCTACTTCTCTCTTGAAGCAACACTCGTGGTCTCCTGATCTA  147

Query  121  ATCCGCGAAGAAGCTTGGTCAAAACGTCAAGATACCTCCCGCCACCGTCATCGCCGCCGT  180
            |||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct  148  ATCCGCGAGGAAGCTTGGTCAAAACGTCAAGATATCTCCCGCCACCGTCATCTCCGCCGT  207

Query  181  GGAAAGAGCTTGACGGACGAAGATCTCGACGAGCTTAAAGCAAGTTTCGAACTCGGATTC  240
            || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  208  GGTAAGAGCTTGACCGACGAAGATCTCGACGAGCTTAAAGCAAGTTTCGAACTCGGATTC  267

Query  241  GGTTTCGGATCTCCTGAAACCGCCGATCCGAGACTTTCCAACACGCTTCCCGCGTTAGAA  300
            |||||||||||||| |||| ||| ||||| ||||||||||||||||||||||||||||||
Sbjct  268  GGTTTCGGATCTCCCGAAAACGCTGATCCAAGACTTTCCAACACGCTTCCCGCGTTAGAA  327

Query  301  CTTTACTTCGCCGTTCAAAAAAGCTACAACGACGCCGTTTCTAACAAGTCAGCAACGTCG  360
            ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct  328  CTTTACTTCGCCGTTCAAAAAAGCTACAACGACGCCGTTTCTAACAAATCAACAACGTCG  387

Query  361  TCGTCTTCACTCTCCGACGGCGATACCAGTCCCCACCACACCGTATACCAAACAAACGAA  420
            |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct  388  TCGTCTTCACTCTCCGACGGCGATACCAGTCCTCACCACACCGTATACCAAACCAACGAA  447

Query  421  GCTGAAGCAGTGGGCGAGAGTGGTGGCGTGCACCGTGAACCAATCGCCGCCGAGATGAAA  480
            ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  448  GCTGAAGCAATGGGCGAGAGTGGTGGCGTGCACCGTGAACCAATCGCCGCCGAGATGATA  507

Query  481  ATTT  484
            ||||
Sbjct  508  ATTT  511



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23157941767


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5