BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485389
Length=354
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51360.1 | Symbols: | Transcription elongation factor (TFII... 494 3e-139
AT3G50373.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 394 3e-109
> AT5G51360.1 | Symbols: | Transcription elongation factor (TFIIS)
family protein | chr5:20871918-20872277 FORWARD LENGTH=360
Length=360
Score = 494 bits (267), Expect = 3e-139
Identities = 330/360 (92%), Gaps = 6/360 (2%)
Strand=Plus/Plus
Query 1 ATGGCTGTTTCAGACGATCT--C-CCACCACCATGTGTGAACGATCATGTg-a-a-gaga 54
|||||| |||| || ||||| | ||||||||| ||||||||||||||||| | | ||||
Sbjct 1 ATGGCTTTTTCCGATGATCTCCCACCACCACCACGTGTGAACGATCATGTGAAGACGAGA 60
Query 55 agaagcagaaaaagaagaacaataaaaaagaagcaacttgaagaaTTGATTAGCACCGCC 114
|||| ||||||||||||||| || || | ||||||||||||||||||||| |||||||||
Sbjct 61 AGAAACAGAAAAAGAAGAACGATCAAGACGAAGCAACTTGAAGAATTGATAAGCACCGCC 120
Query 115 GTAAGAGCCGCTCATGTTGCAAGAGACAAAGGGTTTTACATAGTCTCTCCGGAAGCCATA 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACAAGAGCCGCTCATGTTGCAAGAGACAAAGGGTTTTACATAGTCTCTCCGGAAGCCATA 180
Query 175 CAATGCGTTGAGATCCTTAGACATATGCGAAGCTTACCTCTTAACGCTCGTCTTATTACC 234
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 181 CAATGCGTTGAGATCCTTAGACATATGCGAACCTTACCTCTAAACGCTCGTCTTATTACC 240
Query 235 AAAACCGACGGTTTACGTATTCTTCTATTTCTCTCAAAGAATGGTAACCCTAAAATCAGG 294
||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||
Sbjct 241 AAAACCGACGGTTTACGCGTTCTTCTATTTCTCTCTAAGAACGGTAACCCTAAAATCAGG 300
Query 295 TCTGAGTCAAAAGCCGTCATTGATCACTGGAAGGGCATTCTCCaaaaaaaaGTTCATTAA 354
||||||||||| |||||||||||||||||||| |||||||||| | ||||||||||||
Sbjct 301 TCTGAGTCAAAGGCCGTCATTGATCACTGGAAAAGCATTCTCCATACCAAAGTTCATTAA 360
> AT3G50373.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Transcription elongation factor (TFIIS) family protein
(TAIR:AT5G51360.1); Has 4 Blast hits to 4 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr3:18684659-18685121 REVERSE LENGTH=447
Length=447
Score = 394 bits (213), Expect = 3e-109
Identities = 258/280 (92%), Gaps = 2/280 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGTTTCAGACGATCTCCCACCACCATGTGTGAACGATCATGTgaagagaagaagc 60
|||| | |||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATTTTTCTGATGATCTCCCACCACCATGTGTGAACGATCATGTGAAGAGAAGAAGC 60
Query 61 -agaaaaagaagaacaataaaaaagaagcaacttgaagaaTTGATTAGCACCGCCGTAAG 119
|| ||| ||||||| |||| || |||||| ||||||||| | |||||||||||| ||||
Sbjct 61 AAG-AAAGGAAGAACGATAAGAACGAAGCATCTTGAAGAACTAATTAGCACCGCCATAAG 119
Query 120 AGCCGCTCATGTTGCAAGAGACAAAGGGTTTTACATAGTCTCTCCGGAAGCCATACAATG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGCCGCTCATGTTGCAAGAGACAAAGGGTTTTACATAGTCTCTCCGGAAGCCATACAATG 179
Query 180 CGTTGAGATCCTTAGACATATGCGAAGCTTACCTCTTAACGCTCGTCTTATTACCAAAAC 239
|||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||
Sbjct 180 CGTTGAGATCCTTAGACATATGCGAACCTTACCTCTCAACGCTCGTCTTATTAGCAAAAC 239
Query 240 CGACGGTTTACGTATTCTTCTATTTCTCTCAAAGAATGGT 279
|||||||||||| ||||||| |||||||| ||||| |||
Sbjct 240 CGACGGTTTACGCGTTCTTCTCTTTCTCTCTAAGAACGGT 279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16588357170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5