BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485395
Length=2340
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50430.1 | Symbols: | unknown protein; Has 54 Blast hits to... 3291 0.0
AT3G50440.1 | Symbols: ATMES10, MES10 | methyl esterase 10 | ch... 147 6e-34
> AT3G50430.1 | Symbols: | unknown protein; Has 54 Blast hits
to 54 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa
- 29; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes
- 1 (source: NCBI BLink). | chr3:18713697-18717409 FORWARD
LENGTH=2329
Length=2329
Score = 3291 bits (1782), Expect = 0.0
Identities = 2176/2360 (92%), Gaps = 51/2360 (2%)
Strand=Plus/Plus
Query 1 GTGAACAGTCGTCGTTGTAAAATGGCTACCGGAAACTTAGCTTCTCGTCTTCATCTCTTG 60
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 GTGAACTGTCGTCGTTGTAAAATGGCTACCGGAAACTTGGCTTCTCGTCTTCATCTCTTG 60
Query 61 ATCGATCGCTGTGTTCGCCAATACCCTGAAAGAGAAGCA--AAC-TCGCCGACGAAGGAA 117
||||||| ||||||||||||| |||||||||||||| | ||| | |||||||||||||
Sbjct 61 ATCGATCTTTGTGTTCGCCAATTCCCTGAAAGAGAAGAAGTAACTTTGCCGACGAAGGAA 120
Query 118 ACGGAGAAAGATCTGCTTCTTTCTCTATCTCAGGTTCATCATTGTCGATGCATTGTTTGC 177
||||| |||||||||||||||||||||||||||| | | | | || || | |||
Sbjct 121 ACGGAAAAAGATCTGCTTCTTTCTCTATCTCAGG-TGTTGAGAG-AAATTCAAT-CTTGG 177
Query 178 TTCCTCG-AAGCTCCGGTGTTGAGAGAAATTCAATCTG-GAGAGGAGACTGTTGTTGATC 235
|| || || ||| | || | | |||| | |||||||||||||||||||||
Sbjct 178 AGGAGCGAAATTTCATGTGATAAG-GCGGTGGAATC-GCGAGAGGAGACTGTTGTTGATC 235
Query 236 ATGATGAGA-CTGCTGATGCTTTATATGGTCCAGAATCTAAAGAGTATTTATGCTTAGAA 294
||||||| | ||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 236 ATGATGA-ATCTGCTGATGCTTTATATGGTCCAGACTCTATAGAGTATTTATGCTTAGAA 294
Query 295 AGACTTGTGGCTGATCTTGTTGGTTTGTTGGGTATGAAAAATGTGCATATTAAACATTTG 354
||||||||||| ||||||||| |||||||||||||| | ||||||||| |||||||||||
Sbjct 295 AGACTTGTGGCGGATCTTGTTTGTTTGTTGGGTATGGAGAATGTGCATGTTAAACATTTG 354
Query 355 GCTGGCAACATTCTTGTGGAAGTATCCGAG-TCCCTGGTTCAATCTGGAAGTCAATGGGA 413
||||||||||| |||||||||||||||| | | || ||| |||||||||||||||||||
Sbjct 355 GCTGGCAACATACTTGTGGAAGTATCCG-GTTGTCTTGTTGAATCTGGAAGTCAATGGGA 413
Query 414 TGAGTTCATTCGTTTGCTTTGTGAATGTTTGCGCTTAGCAGTTATCTACAGTTGCCCAAT 473
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 414 TGAGTTCATTCGTTTGCTTTGTGAATGTTTGCGGTTAGCAGTTATCTACAGTTTCCCAAT 473
Query 474 TCCTGCTGTTGCTTCTGAAACTGGATTTGGAATTCCGGATCTACGTTTCTTAGGTTCTGA 533
||||||||| | ||||||||||||||||||| || |||| | ||||||| ||||||||
Sbjct 474 TCCTGCTGTAGGATCTGAAACTGGATTTGGAAGTCTAGATCAATGTTTCTTCGGTTCTGA 533
Query 534 TGTTCTTAAATGTAAGCTGGAAAAGGCTAACTGGTCCACCGTGTCTGATCTCTTTCGAAT 593
||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| |
Sbjct 534 TGTTCTTAAATGTAAGCTGGAAAAGGCTAACTGGTCCACGGTGTCGGATATCTTTCGAGT 593
Query 594 TCTTCGTAATATATTGAAGCGCTTGAGCCAAGAAGA-AGATGAGGAACTTCTTGATGTAT 652
|||||||||||||||||||||||||||||||||||| | |||||||| || |||||||||
Sbjct 594 TCTTCGTAATATATTGAAGCGCTTGAGCCAAGAAGACA-ATGAGGAAATTTTTGATGTAT 652
Query 653 ACTTGGAATCTGTCAACTCTACACTTGCAAAAGTTCCTTGGTCCCGAGTGGACACTGTGT 712
|||||||||||||||||||||||||||||||||||||||||| |||| |||| ||| | |
Sbjct 653 ACTTGGAATCTGTCAACTCTACACTTGCAAAAGTTCCTTGGTGCCGATTGGATACTATTT 712
Query 713 TCTCTCATCAGCATGGTAGTGGTGAAAGAAATTTCCAAGGTCAGAGTGGAACTCTCGGAA 772
| ||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 713 TTTCTCATCAGCATGGTAGTGGTGAAAGAAATTTCCAAGGTCAGA---G-----T-GGAA 763
Query 773 GCACTGCAAACTGTGAGGAAGCAACTGTATTTCTTGGGAACTTTGTCCAGTTTCTCTGTT 832
| | | ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 764 --A---C--A--GTGAGGAAGCAACTGTATTTCTTGGGAGCTTTGTCCAGTTTCTCTGTT 814
Query 833 CCATGGTTCAGCATGTTCGTGTTGTAGAAGATTCTGATGATTCTGAACCTTCACATTTGA 892
||||||||||||| |||| ||||||||||||||||||||||| |||||||||| ||||||
Sbjct 815 CCATGGTTCAGCAGGTTCATGTTGTAGAAGATTCTGATGATTTTGAACCTTCATATTTGA 874
Query 893 TCCTCCAAAAAACCATCAAGCTTGTTCCGGATCTCATCCGATGGTGCCAACCAAAGTTAA 952
||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| |
Sbjct 875 TCCTCCAAAAAACCATCAAGCTTATTCCGGATCTCCTCCGTTGGTGCCAACCAAAGTTGA 934
Query 953 AAAGTCAAAGTGGCTCTTGCATGTCAAGATACCTAGGTCACAAGTTACTGGTGTTGATGA 1012
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 935 AAAGTCAAAGTGGCTCTTGCATGTCAAGATACCTAGGGCACAAGTTACTGGTGTTGATGA 994
Query 1013 TCAGGCTTACTGATAAGTCCAATATAAAATGTACCATTCTTCTTTCATGGCTGCAATATT 1072
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 995 TCAGGCTTACTGATAAGTCCAAAATCAAATGTACCATTCTTCTTTCATGGCTGCAATATT 1054
Query 1073 TGCAACGAGATTCTCAAGGCTTTCTTCAACACACCCTAACAAAGTTTAAACCCGTTCAAG 1132
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 TGCAACGGGATTCTCAAGGCTTTCTTCAACACACCCTAACAAAGTTTAAACCCGTTCAAG 1114
Query 1133 ATAATTGTTTGGAGGGTTCGCCATTTTTTGTGAGTTTGTCTGATAGGGAGATCAATGAGA 1192
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1115 ATAATTGTTTGGAGGGTTCGCCATTCTTTGTGAGTTTGTCTGATAGGGAGGTCAATGAGA 1174
Query 1193 CCCATTCTAATCATTTGCAAAGACTTTCTGTGTTCCTATTCTTACGGTGCTCCTTCACTT 1252
||||||||||||||||||||||| |||||||| || ||| ||||||||||||||||||
Sbjct 1175 TGCATTCTAATCATTTGCAAAGACTCTCTGTGTTTCTGTTCCTACGGTGCTCCTTCACTT 1234
Query 1253 TGATTTATTCAAGTAGACATAACGGCAAGC-AGTGTGAGTTTGATTGTAGAAAGAAAGGG 1311
||||||| |||||||||||||||| ||||| | |||||||||||||||||||||||||||
Sbjct 1235 TGATTTACTCAAGTAGACATAACGACAAGCTA-TGTGAGTTTGATTGTAGAAAGAAAGGG 1293
Query 1312 ATGACAGAGATGTTTAAATGGATTGTACGACAGATTCCAGGCATTATATGTTCTGATCAC 1371
||| ||||||||||||||||||||| ||||||||||||||||| ||| | ||||||||||
Sbjct 1294 ATGGCAGAGATGTTTAAATGGATTGAACGACAGATTCCAGGCAATATGTTTTCTGATCAC 1353
Query 1372 AGAATTTATAGCAAGAAGAGTGTTGAATTTTCTGCATCCTTCGTCCGGCTGTTCATGCAT 1431
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1354 AGAATTTATAGCAAGAAGAATGTTGAATTTTCTGCATCCTTCGTTCGGCTGTTCATGCAT 1413
Query 1432 GAGGATGATCTATTATTTAAAGTCCTCCTGCAATTGCTGTCTGTACCATTGCATAGACAG 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1414 GAGGATGATCTATTATTTAAAGTCCTCCTGCAATTGCTGTCTGTACCATTGCATAGACAG 1473
Query 1492 GAACTGCCTAACGTGGAAGGGGGTTCGCTAGAAGATGAGGAACAAATTACTCTCTTCCGT 1551
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1474 GAATTGCCTAACGTGGAAGGGGGTTCGCTTGAAGATGAGGAACAAATTACTCTCTTCCGT 1533
Query 1552 TTCTCAACCTTGTTCAATCCTGTAACCCTATTCTGTATATTTCTTTCAGAGCTGCATTAT 1611
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1534 TTATCAACCTTGTTCAATCCTGTAAGATTATTCTGTATATTTCTTTCAGAGCTGCATTAT 1593
Query 1612 GATCATCAAGTACTTCTTGATTACCTTATATCAAAAGATATCGGGGATAGCTGTGCAGAG 1671
|||||||||||||||||||||||||||||||| |||||||| |||| |||||| ||||||
Sbjct 1594 GATCATCAAGTACTTCTTGATTACCTTATATCTAAAGATATTGGGGCTAGCTGCGCAGAG 1653
Query 1672 TACCTCCTGAGATGCTTGCGCGCAGTCTGTGATTCATGGGCTCTATTTGTGGAATTCCCA 1731
||||| |||||||||||||| ||||| |||||||||||| ||||||||||||||||||||
Sbjct 1654 TACCTGCTGAGATGCTTGCGTGCAGTATGTGATTCATGGACTCTATTTGTGGAATTCCCA 1713
Query 1732 TTTGAAGGAAGTACAAATGCTTCATCTCCGAAGAGAAGAAAAGTTTTGCCTGAGACTTCT 1791
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1714 TTTGAAGGAAGTACAGATGCTCCATCTCCGAAGAGAAGAAAAGTTTTGCCTGAGACTTCT 1773
Query 1792 GAGGTTGAACAAAACTGGAGATTACATCCCCAGGCTTTTGAAGACGCCAAAGATTGTCTG 1851
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1774 GAGGTTGAACAAAACTGGAGATTACATGCCCAGGCTTTTGAAGACGCCAAAGATTGTCTG 1833
Query 1852 CTTTCGTTACAAAATTCAGTTTTTAAGCTACATCAGAAGAAACTGTTTCCATACAACCCA 1911
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1834 CTTTCGTTACAAAATTCAGTTGTTAAGCTACATCAGAAGAAACTGTTTCCATACAACCCA 1893
Query 1912 GAGGCTCTTCTACGACGTTTGTCAAGGTTTCAAGAGCTCTGTCTATCCCATGAGTAAATA 1971
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1894 GAGGCTCTTCTACGACGTTTGTCAAGGTTTCATGAGCTCTGTCTATCCCATGAGTAA-TA 1952
Query 1972 TATCTGGCCCAAAGGTGAGATTCTCTGAGACAGAA--G--G-ATCAGATGCCAACACAAA 2026
||||||| ||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 1953 TATCTGGACCAAAGGTGAGATTCTCTGAGACAGAACAGAAGGATCAGATGCCAACACAAA 2012
Query 2027 GAAGTCTCCTTTCCAGATCAAATTTCAAACTAATCGACTCACCAGTAGAAGTTTAT-GTA 2085
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| | |
Sbjct 2013 GAAGTCTCCTTTCCAGATCAAATTTCAAACTAATCGGCTCACCAGTAGAAGTGTATAG-A 2071
Query 2086 AGTT--TGAGAATCTTTGGTTGGTGCAGCTGCTATGAAACAGAGAGCATTATGTTCTTGC 2143
| | | | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2072 -GATCCT-ACATTCTTTGGTTGGTGCAGCTGCTATGAAACAGAGAGCATTATGTTCTTGC 2129
Query 2144 CTCCCCAATCCAAATCTAAATGGTATAAGATACTCTCTAGTCAAGCTAATGTGAAACTGC 2203
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2130 CTCCACAATCCAAATCTGAATGGTATAAGATACTCTCTAGTCAAGCTAATGTGAAACTGC 2189
Query 2204 CCCAGCCAAATACAGTAAGCAAGGAAGTGTAGAATATCAAGAATCACAAATATTGAAACT 2263
||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2190 CCCAGCCAATTAGAGTAAGCAATGAAGTGTAGAATATCAAGAATCACAAATATTGAAACT 2249
Query 2264 CTCTTATTCATATCATAAATGTAACTGAGCCCAAATCATACATTG-T-T-ATCATTTTAC 2320
||||||||||||||||| |||||||||||||||||||||||| | | | ||||||||||
Sbjct 2250 CTCTTATTCATATCATAGATGTAACTGAGCCCAAATCATACACAGGTGTCATCATTTTAC 2309
Query 2321 ATTTAGTTATATTTCGCTGC 2340
||||||||||||||||||||
Sbjct 2310 ATTTAGTTATATTTCGCTGC 2329
> AT3G50440.1 | Symbols: ATMES10, MES10 | methyl esterase 10 |
chr3:18717311-18718494 REVERSE LENGTH=1007
Length=1007
Score = 147 bits (79), Expect = 6e-34
Identities = 93/99 (94%), Gaps = 3/99 (3%)
Strand=Plus/Minus
Query 2245 AATCACAAATATTGAAACTCTCTTATTCATATCATAAATGTAACTGAGCCCAAATCAT-- 2302
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1007 AATCACAAATATTGAAACTCTCTTATTCATATCATAGATGTAACTGAGCCCAAATCATAC 948
Query 2303 ACA-TTGTTATCATTTTACATTTAGTTATATTTCGCTGC 2340
||| ||| ||||||||||||||||||||||||||||||
Sbjct 947 ACAGGTGTCATCATTTTACATTTAGTTATATTTCGCTGC 909
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116164061130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5