BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485397
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50460.1 | Symbols: HR2 | homolog of RPW8 2 | chr3:18727840-... 939 0.0
> AT3G50460.1 | Symbols: HR2 | homolog of RPW8 2 | chr3:18727840-18728649
FORWARD LENGTH=618
Length=618
Score = 939 bits (508), Expect = 0.0
Identities = 585/622 (94%), Gaps = 5/622 (1%)
Strand=Plus/Plus
Query 1 ATGCCTCTTGCCGAGATTATCGCAGGGGCTGCCCTTGGACTTGCTCTCCAAATCCTTCAC 60
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGCCTCTTACCGAGATTATCGCAGGGGCTGCTCTTGGACTTGCTCTCCAAATCCTTCAC 60
Query 61 GATGCCATCCAAAGAGCAAAAGATAGATCCTTAACCACAAGTTGTATCTTGGATCGTCTT 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 GAGGCCATCCAAAGAGCAAAAGATAGATCCTTAACCACAAGTTGTATCTTGGACCGTCTC 120
Query 121 GATTCTACCATCTTGAGGATCTCTCCATTGATCGCTAAGGTCGAAAAGCTCGGA-AAAGA 179
|||||||| |||||||||||| ||||| |||| |||||||||||||||||| | |||||
Sbjct 121 GATTCTACAATCTTGAGGATCACTCCACTGATGGCTAAGGTCGAAAAGCTCA-ACAAAGA 179
Query 180 ATCCGATGAATCTATGAGGAAAGTCATCAAAGATCTTAAACATCTTCTAGAGAAAGCCGT 239
||||||||||||| ||||||||||| || ||||||||||||||||||| |||||||||||
Sbjct 180 ATCCGATGAATCTCTGAGGAAAGTCTTCGAAGATCTTAAACATCTTCTCGAGAAAGCCGT 239
Query 240 TGTTCTTGTCGAAGCTTATGCGGAGCTCAAACGCAGAAACTTGGTTGGAAAGTATAGGTA 299
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 240 GGTTCTTGTCGAAGCTTATGCGGAGCTCAAACGCAGAAACTTACTTGGAAAATATAGGTA 299
Query 300 CAAGAGAAGAATTAAAGAGTTAGAAGGTTCATTGAAATGGATGGTAGATGTTGATGTTAA 359
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 CAAGAGAAGAATCAAAGAGTTAGAAGGTTCATTGAAATGGATGGTAGATGTTGACGTTAA 359
Query 360 AGTGAATCAATGGGCAGATATCAAAGATCTCATGGCCAAGATGTCTGAAATGAACACTAA 419
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 AGTCAATCAATGGGCAGATATCAAAGATCTTATGGCCAAGATGTCTGAAATGAACACTAA 419
Query 420 ACTAGATAAAATCATGGGCCAACCAATAGATTGTATTATATCTGATGAGGATAATACTAA 479
||| || ||||||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct 420 ACTTGAAAAAATCATGGGTCAACCAATAGATTGTATTATATCTGA--AG-ATAATACTAA 476
Query 480 TCTGGACATAGTCGAAAGAGTTGATCCATCATTGGAAGCCAAAGCTGGATGCTCAAATGG 539
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 477 TATGGACATAGTCGAAAGAGTTGATCCATCATTGGAAGCAAAAGCTGGATGCTCAAATAG 536
Query 540 CGATTCTAAGCCGAAGATTGATATCCACCTTCGATGGAGCAAGAAAAGCAAAGATCACGG 599
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 537 CGATTCTAAGCCGAAGATCGATATCCACCTTCGATGGAGCAAGCAAAGCAAAGATCACGG 596
Query 600 AGTTCGATTCGTTTTGAATTAG 621
| |||| |||||||||||||||
Sbjct 597 AATTCGCTTCGTTTTGAATTAG 618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29939551612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5