BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485398 Length=836 Score E Sequences producing significant alignments: (Bits) Value AT3G50470.1 | Symbols: HR3, MLA10 | homolog of RPW8 3 | chr3:18... 1245 0.0 > AT3G50470.1 | Symbols: HR3, MLA10 | homolog of RPW8 3 | chr3:18729054-18730269 FORWARD LENGTH=841 Length=841 Score = 1245 bits (674), Expect = 0.0 Identities = 783/837 (94%), Gaps = 2/837 (0%) Strand=Plus/Plus Query 1 AAACAAAAGACTCTTCAATGGTTCCATGTACATAGATTCCTCCATACATTCACGTTGAGA 60 |||||||||| |||||||||||| |||||| ||||||| ||||||||| ||||||||||| Sbjct 1 AAACAAAAGATTCTTCAATGGTTTCATGTATATAGATTGCTCCATACAATCACGTTGAGA 60 Query 61 GCTAAAGAGCTAATCTCTCGATCCTAAGAATAATGCCGGTTAGTGAGCTTATGGCAGGGG 120 |||||||||||||||||| || || ||||| |||||||||||||||| |||||||||||| Sbjct 61 GCTAAAGAGCTAATCTCTTGACCCAAAGAAAAATGCCGGTTAGTGAGATTATGGCAGGGG 120 Query 121 CTGCTCTTGGGCTTGCTCTCCAAGTCCTTCACGACGCCATCAAAAGAGCAAAAGATAGAT 180 | |||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||| Sbjct 121 CAGCTCTTGGACTTGCTCTCCAAGTCCTTCACGATGCCATCAAAAAAGCAAAAGATAGAT 180 Query 181 CTCTAACCACAAGATGCATCTTGGACCGTCTTGATGCTACAATCTTTAGGATCACTCCAT 240 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 181 CTCTAACTACAAGATGCATCTTGGACCGTCTTGATGCTACAATCTTTAGGATCACTCCGT 240 Query 241 TGGTGGCTCAAGTCGATAAGCTTAGCGAAGAAGTAGAAGATTCACCGAGGAAAGTTATCG 300 ||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 241 TGGTGACTCAAGTCGATAAGCTTAGCGAAGAAGTGGAAGATTCACCGAGGAAAGTCATCG 300 Query 301 AAGATCTTAAGCATCTCCTTGAAAAGGCTGTTTCTCTTGTCGAGGCTTATGCGGAACTCA 360 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 301 AAGATCTTAAGCATCTCCTTGAAAAGGCTGTTTCTCTTGTTGAGGCTTATGCGGAACTCA 360 Query 361 GACGCAGAAACTTACTCAGGAAGTTCAGGTATAAGAGAAGAATCAAAGAGCTAGACGCTT 420 |||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| |||| Sbjct 361 GACGCAGAAACTTACTCAAGAAGTTCAGGTATAAGAGAAGGATCAAAGAGTTAGAAGCTT 420 Query 421 CATTAAGATGGATGGTAGATGTGGATGTTCAAGTCAGTCAATGGGTAGATATCAAAGAAC 480 |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 421 CATTAAGATGGATGGTAGATGTGGATGTCCAAGTCAATCAATGGGTAGATATCAAAGAAC 480 Query 481 TCATGGCTAAGATGTCCGAAATGAACACTAAACTTGACGAAATCACTCGTCAACCAACTG 540 | ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 481 TTATGGCCAAGATGTCCGAAATGAACACTAAACTTGATGAAATCACTCGTCAACCAACTG 540 Query 541 ATTGTATTTGTTTCAAGAGCAATCATAGCACATCACAAAGTAGTAATCAAGATATTGTCG 600 ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 541 ATTGTATTTGTTTCAAGAGCAATCATAGCACATCACAAAGTAGTAGTCAAAATATTGTCG 600 Query 601 AAGAGACAGACCGATCTTTAGAAGAAAATGTTGAATGTTCGAGTGATGGATCTAAACCGA 660 |||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 601 AAGAAACAGACCGATCTTTAGAAGAAATTGTTGAATGTTCGAGTGATGGGTCTAAACCGA 660 Query 661 AGATTGATATCCACATTCACTGGAGTTCAAGGAAGCTGAACAAAGACCGTGAAATCCGAT 720 |||| |||||||||||||| ||||||||||| || | ||||||||||||||| ||||||| Sbjct 661 AGATCGATATCCACATTCATTGGAGTTCAAGAAAACGGAACAAAGACCGTGAGATCCGAT 720 Query 721 TCT-TCTTGAAGTAATGACTCTTAATGTACCAATTGTGTCAAATCACAGAAATGTGATAA 779 | | ||||||||| |||| |||| ||||||||||||||||||||||| |||||||||| Sbjct 721 T-TGTCTTGAAGTGATGATTCTTGATGTACCAATTGTGTCAAATCACTCAAATGTGATAG 779 Query 780 TAGGATTAATTTCAAATGTAGATTCAAGTTTGGAATAATTTGGAGAATTCCTTATTT 836 ||||| |||||| ||||||||| |||| |||| ||||||| |||||||||||||||| Sbjct 780 TAGGACTAATTTAAAATGTAGACTCAACTTTGAAATAATTAGGAGAATTCCTTATTT 836 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40739893217 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5