BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485398
Length=836
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50470.1 | Symbols: HR3, MLA10 | homolog of RPW8 3 | chr3:18... 1245 0.0
> AT3G50470.1 | Symbols: HR3, MLA10 | homolog of RPW8 3 | chr3:18729054-18730269
FORWARD LENGTH=841
Length=841
Score = 1245 bits (674), Expect = 0.0
Identities = 783/837 (94%), Gaps = 2/837 (0%)
Strand=Plus/Plus
Query 1 AAACAAAAGACTCTTCAATGGTTCCATGTACATAGATTCCTCCATACATTCACGTTGAGA 60
|||||||||| |||||||||||| |||||| ||||||| ||||||||| |||||||||||
Sbjct 1 AAACAAAAGATTCTTCAATGGTTTCATGTATATAGATTGCTCCATACAATCACGTTGAGA 60
Query 61 GCTAAAGAGCTAATCTCTCGATCCTAAGAATAATGCCGGTTAGTGAGCTTATGGCAGGGG 120
|||||||||||||||||| || || ||||| |||||||||||||||| ||||||||||||
Sbjct 61 GCTAAAGAGCTAATCTCTTGACCCAAAGAAAAATGCCGGTTAGTGAGATTATGGCAGGGG 120
Query 121 CTGCTCTTGGGCTTGCTCTCCAAGTCCTTCACGACGCCATCAAAAGAGCAAAAGATAGAT 180
| |||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 121 CAGCTCTTGGACTTGCTCTCCAAGTCCTTCACGATGCCATCAAAAAAGCAAAAGATAGAT 180
Query 181 CTCTAACCACAAGATGCATCTTGGACCGTCTTGATGCTACAATCTTTAGGATCACTCCAT 240
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 CTCTAACTACAAGATGCATCTTGGACCGTCTTGATGCTACAATCTTTAGGATCACTCCGT 240
Query 241 TGGTGGCTCAAGTCGATAAGCTTAGCGAAGAAGTAGAAGATTCACCGAGGAAAGTTATCG 300
||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 241 TGGTGACTCAAGTCGATAAGCTTAGCGAAGAAGTGGAAGATTCACCGAGGAAAGTCATCG 300
Query 301 AAGATCTTAAGCATCTCCTTGAAAAGGCTGTTTCTCTTGTCGAGGCTTATGCGGAACTCA 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 301 AAGATCTTAAGCATCTCCTTGAAAAGGCTGTTTCTCTTGTTGAGGCTTATGCGGAACTCA 360
Query 361 GACGCAGAAACTTACTCAGGAAGTTCAGGTATAAGAGAAGAATCAAAGAGCTAGACGCTT 420
|||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| ||||
Sbjct 361 GACGCAGAAACTTACTCAAGAAGTTCAGGTATAAGAGAAGGATCAAAGAGTTAGAAGCTT 420
Query 421 CATTAAGATGGATGGTAGATGTGGATGTTCAAGTCAGTCAATGGGTAGATATCAAAGAAC 480
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 421 CATTAAGATGGATGGTAGATGTGGATGTCCAAGTCAATCAATGGGTAGATATCAAAGAAC 480
Query 481 TCATGGCTAAGATGTCCGAAATGAACACTAAACTTGACGAAATCACTCGTCAACCAACTG 540
| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 481 TTATGGCCAAGATGTCCGAAATGAACACTAAACTTGATGAAATCACTCGTCAACCAACTG 540
Query 541 ATTGTATTTGTTTCAAGAGCAATCATAGCACATCACAAAGTAGTAATCAAGATATTGTCG 600
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 541 ATTGTATTTGTTTCAAGAGCAATCATAGCACATCACAAAGTAGTAGTCAAAATATTGTCG 600
Query 601 AAGAGACAGACCGATCTTTAGAAGAAAATGTTGAATGTTCGAGTGATGGATCTAAACCGA 660
|||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 601 AAGAAACAGACCGATCTTTAGAAGAAATTGTTGAATGTTCGAGTGATGGGTCTAAACCGA 660
Query 661 AGATTGATATCCACATTCACTGGAGTTCAAGGAAGCTGAACAAAGACCGTGAAATCCGAT 720
|||| |||||||||||||| ||||||||||| || | ||||||||||||||| |||||||
Sbjct 661 AGATCGATATCCACATTCATTGGAGTTCAAGAAAACGGAACAAAGACCGTGAGATCCGAT 720
Query 721 TCT-TCTTGAAGTAATGACTCTTAATGTACCAATTGTGTCAAATCACAGAAATGTGATAA 779
| | ||||||||| |||| |||| ||||||||||||||||||||||| ||||||||||
Sbjct 721 T-TGTCTTGAAGTGATGATTCTTGATGTACCAATTGTGTCAAATCACTCAAATGTGATAG 779
Query 780 TAGGATTAATTTCAAATGTAGATTCAAGTTTGGAATAATTTGGAGAATTCCTTATTT 836
||||| |||||| ||||||||| |||| |||| ||||||| ||||||||||||||||
Sbjct 780 TAGGACTAATTTAAAATGTAGACTCAACTTTGAAATAATTAGGAGAATTCCTTATTT 836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40739893217
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5