BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485399
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50500.2 | Symbols: SNRK2.2 | SNF1-related protein kinase 2.... 1949 0.0
AT5G66880.1 | Symbols: SNRK2-3, SNRK2.3, SRK2I | sucrose nonfer... 1033 0.0
> AT3G50500.2 | Symbols: SNRK2.2 | SNF1-related protein kinase
2.2 | chr3:18741594-18744157 REVERSE LENGTH=1574
Length=1574
Score = 1949 bits (1055), Expect = 0.0
Identities = 1279/1377 (93%), Gaps = 56/1377 (4%)
Strand=Plus/Plus
Query 81 TAATCTGATGTGATTGA-GAAGAG--TTA-CGG-AGTAGAAGAATCAG--AAAATGGATC 133
||||||||||||||| | |||||| || || || ||||||||||| |||||||||
Sbjct 203 TAATCTGATGTGATT-AGGAAGAGCAATAGAGGAAG-AGAAGAATCAGAAAAAATGGAT- 259
Query 134 CGGCGGCGACTAATTCACCGATTATGCCGATTGATTTACCGATTATGCACGACAGTGATC 193
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 C--CGGCGACTAATTCACCGATTATGCCGATTGATTTACCGATTATGCACGACAGTGATC 317
Query 194 GTTACGACTTCGTTAAAGATATTGGCTCTGGTAATTTCGGTGTTGCTCGTCTCATGACTG 253
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 318 GTTACGACTTCGTTAAAGATATTGGCTCTGGTAATTTCGGCGTTGCTCGTCTCATGACCG 377
Query 254 ATAAAGTCACGAAGGAGCTTGTTGCTGTTAAGTACATCGAGAGAGGAGAAAAGATTGATG 313
||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 378 ATAGAGTCACCAAGGAGCTTGTTGCTGTTAAATACATCGAGAGAGGAGAAAAGATTGATG 437
Query 314 AAAATGTTCAGAGGGAGATTATTAATCATAGATCATTGAGACATCCTAATATTGTCAGGT 373
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 438 AAAATGTTCAGAGGGAGATTATCAATCATAGATCATTGAGACATCCTAATATTGTTAGGT 497
Query 374 TTAAAGAGGTGATTTTGACGCCTACCCATTTGGCTATTGTTATGGAATATGCTGCTGGTG 433
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 498 TTAAAGAGGTGATTTTGACGCCTTCCCATTTGGCTATTGTTATGGAATATGCTGCTGGTG 557
Query 434 GAGAACTTTATGAGCGGATTTGTGTTGCAGGGCGGTTTAGTGAAGACGAGGCTCGGTTCT 493
||||||||||||||||||||||| ||| || |||||||||||||| |||||||||||||
Sbjct 558 GAGAACTTTATGAGCGGATTTGTAATGCCGGACGGTTTAGTGAAGATGAGGCTCGGTTCT 617
Query 494 TCTTTCAGCAGCTTATATCTGGAGTTAGCTATTGTCATGCAATGCAAATATGCCATCGGG 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 TCTTTCAGCAGCTTATATCTGGAGTTAGCTATTGTCATGCAATGCAAATATGCCATCGGG 677
Query 554 ATCTGAAGCTGGAAAATACATTGTTGGACGGAAGTCCGGCACCTCGTTTGAAAATATGTG 613
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 678 ATCTGAAGCTGGAAAATACATTGTTAGATGGAAGTCCGGCACCTCGTTTGAAAATATGTG 737
Query 614 A------TT-TT----GG----A--TA--T-TC-CAAGTCTTCTGTTCTTCATTCCCAAC 652
| || || || | || | || ||||||||||||||||||||||||||
Sbjct 738 ATTTTGGTTATTCCAAGGTACTATTTATTTCTCTCAAGTCTTCTGTTCTTCATTCCCAAC 797
Query 653 CAAAGTCAACTGTTGGTACTCCTGCTTACATTGCACCAGAGATTCTTCTTCGACAGGAAT 712
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 798 CAAAGTCAACTGTTGGTACTCCTGCATACATTGCACCAGAGATTCTTCTTCGACAGGAAT 857
Query 713 ATGATGGCAAGCTTGCAGATGTTTGGTCATGCGGTGTAACCTTATATGTAATGTTGGTTG 772
|||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 858 ATGATGGCAAGCTTGCAGATGTATGGTCTTGCGGTGTAACATTATATGTAATGTTGGTTG 917
Query 773 GAGCTTATCCATTCGAGGATCCACAAGAGCCACGAGATTATCGAAAGACAATACAAAGAA 832
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 918 GAGCTTATCCATTCGAGGATCCACAGGAGCCACGAGATTATCGAAAGACAATACAAAGAA 977
Query 833 TTCTTAGTGTCACATACTCGATCCCAGAGGACTTACACCTTTCACCAGAATGTCGCCACC 892
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 978 TCCTTAGTGTCACATACTCGATCCCAGAGGACTTACACCTCTCACCAGAATGTCGCCATC 1037
Query 893 TAATATCGAGGATTTTCGTGGCCGATCCTGCAACAAGGATCACTATTCCGGAGATCACAT 952
||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 1038 TAATATCGAGGATCTTCGTGGCTGATCCGGCAACAAGAATCACTATTCCGGAGATCACAT 1097
Query 953 CCGATAAATGGTTCTTGAAGAATCTTCCAGGTGATTTGATGGATGAGAACAGAATGGGTA 1012
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct 1098 CCGATAAATGGTTCTTGAAGAATCTACCAGGTGATTTGATGGATGAGAACCGAATGGGAA 1157
Query 1013 GTCAGTTTCAAGAGCCTGAGCAGCCGATGCAGAGCCTTGACACGATTATGCAGATAATAT 1072
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1158 GTCAGTTTCAAGAGCCTGAGCAGCCAATGCAGAGCCTTGACACGATTATGCAGATAATAT 1217
Query 1073 CAGAGGCTACGATTCCGACTGTTCGTAATCGTTGCCTTGATGATTTCATGGCGGATAATC 1132
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1218 CGGAGGCTACGATTCCGACTGTTCGTAATCGTTGCCTCGATGATTTCATGGCGGATAATC 1277
Query 1133 TTGATCTAGATGATGACATGGATGACTTTGATTCCGAATCTGAGATTGATGTTGACAGTA 1192
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 TTGATCTAGACGATGACATGGATGACTTTGATTCCGAATCTGAGATTGATGTTGACAGTA 1337
Query 1193 GTGGAGAGATAGTTTATGCTCTCTGAGATTCCT----------T-TGT-----CCGTACT 1236
||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 1338 GTGGAGAGATAGTTTATGCTCTCTGAGATTCCTGAGGACAAAGTCTGTTTTGTCCGTACT 1397
Query 1237 GTTGAGACACACCAGTGGAGTTTTGTCTTAGCTCCAT----TCCATCGTTCATTTTTGGA 1292
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1398 GTTGAGACACACCACTGGAGTTTTGTCTTAGCTCCACGCACTCCATCGTTCATTTTTGGA 1457
Query 1293 TCGTTTGTTGTTTTTTACTCTACAAGCTTTGGATTCACATACATATAT--GTATTGTAAT 1350
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1458 TCGTTTGTTGTTTTTTACTCTACAAGCTTTGGATTCACATACATATATATGTATTGTAAT 1517
Query 1351 GTAATGTGTAATATATT-TCTGAATTTCTCTTTGTTTAATAACTATTGGGACATTTT 1406
||||| ||||||||||| | || |||||||||||||||||||||||||| |||||||
Sbjct 1518 GTAATATGTAATATATTCTATGTATTTCTCTTTGTTTAATAACTATTGGCACATTTT 1574
> AT5G66880.1 | Symbols: SNRK2-3, SNRK2.3, SRK2I | sucrose nonfermenting
1(SNF1)-related protein kinase 2.3 | chr5:26710555-26712971
FORWARD LENGTH=1467
Length=1467
Score = 1033 bits (559), Expect = 0.0
Identities = 888/1050 (85%), Gaps = 10/1050 (1%)
Strand=Plus/Plus
Query 172 CCGATTATGCACGACAGTGATCGTTACGACTTCGTTAAAGATATTGGCTCTGGTAATTTC 231
||||||||||||||||||||||| || ||||||||||| |||||||| ||||||||||||
Sbjct 182 CCGATTATGCACGACAGTGATCGATATGACTTCGTTAAGGATATTGGTTCTGGTAATTTC 241
Query 232 GGTGTTGCTCGTCTCATGACTGATAAAGTCACGAAGGAGCTTGTTGCTGTTAAGTACATC 291
|||||||||||||| |||| |||||| |||| || |||||||||||||| |||||||||
Sbjct 242 GGTGTTGCTCGTCTTATGAGAGATAAACTCACTAAAGAGCTTGTTGCTGTCAAGTACATC 301
Query 292 GAGAGAGGAGAAAAGATTGATGAAAATGTTCAGAGGGAGATTATTAATCATAGATCATTG 351
||||||||||| |||||||||||||||||||| |||||||| ||||| || || ||| |
Sbjct 302 GAGAGAGGAGACAAGATTGATGAAAATGTTCAAAGGGAGATCATTAACCACAGGTCACTA 361
Query 352 AGACATCCTAATATTGTCAGGTTTAAAGAGGTGATTTTGACGCCTACCCATTTGGCTATT 411
|| ||||||||||||||||| ||||||||||| ||||||||||| || ||| |||||||
Sbjct 362 AGGCATCCTAATATTGTCAGATTTAAAGAGGTCATTTTGACGCCGACTCATCTGGCTATC 421
Query 412 GTTATGGAATATGCTGCTGGTGGAGAACTTTATGAGCGGATTTGTGTTGCAGGGCGGTTT 471
| |||||||||||| |||| || |||||||| ||||||||||| |||||| ||||||
Sbjct 422 ATAATGGAATATGCTTCTGGCGGTGAACTTTACGAGCGGATTTGCAATGCAGGACGGTTT 481
Query 472 AGTGAAGACGAGGCTCGGTTCTTCTTTCAGCAGCTTATATCTGGAGTTAGCTATTGTCAT 531
|||||||| ||||||||||||||||||||||||||| |||||||||| || |||||||||
Sbjct 482 AGTGAAGATGAGGCTCGGTTCTTCTTTCAGCAGCTTCTATCTGGAGTCAGTTATTGTCAT 541
Query 532 GCAATGCAAATATGCCATCGGGATCTGAAGCTGGAAAATACATTGTTGGACGGAAGTCCG 591
| |||||||| |||||||| || |||||||| || |||||||||||||| ||||||||
Sbjct 542 TCGATGCAAATTTGCCATCGTGACCTGAAGCTAGAGAATACATTGTTGGATGGAAGTCCT 601
Query 592 GCACCTCGTTTGAAAATATGTGATTTTGGATATTCCAAGTCTTCTGTTCTTCATTCCCAA 651
|| ||||| || ||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 602 GCTCCTCGATTAAAAATTTGTGATTTTGGATATTCAAAGTCTTCTGTTCTTCATTCACAA 661
Query 652 CCAAAGTCAACTGTTGGTACTCCTGCTTACATTGCACCAGAGATTCTTCTTCGACAGGAA 711
|||||||||||||||||||||||||| ||||| || |||||| | || ||||| ||||||
Sbjct 662 CCAAAGTCAACTGTTGGTACTCCTGCATACATCGCTCCAGAGGTACTGCTTCGTCAGGAA 721
Query 712 TATGATGGCAAGCTTGCAGATGTTTGGTCATGCGGTGTAACCTTATATGTAATGTTGGTT 771
|||||||||||| |||||||||| |||||||| ||||| |||||||| || |||||||||
Sbjct 722 TATGATGGCAAGATTGCAGATGTATGGTCATGTGGTGTGACCTTATACGTCATGTTGGTT 781
Query 772 GGAGCTTATCCATTCGAGGATCCACAAGAGCCACGAGATTATCG-AAAGACAATACAAAG 830
||||| ||||| ||||| |||||| |||||||| |||| ||||| ||| |||||||| ||
Sbjct 782 GGAGCGTATCCGTTCGAAGATCCAGAAGAGCCAAGAGACTATCGGAAA-ACAATACAGAG 840
Query 831 AATTCTTAGTGTCACATACTCGATCCCAGAGGACTTACACCTTTCACCAGAATG-TCGCC 889
||| ||||| || | |||||| ||||| || ||| ||| | ||||| ||||| | | |
Sbjct 841 AATCCTTAGCGTTAAATACTCAATCCCTGATGACATACGGATATCACCTGAATGCT-GTC 899
Query 890 ACCTAATATCGAGGATTTTCGTGGCCGATCCTGCAACAAGGATCA-CTATTCCGGAGATC 948
| || || || || || |||||||| ||||| || || || || | | || || ||||||
Sbjct 900 ATCTTATTTCAAGAATCTTCGTGGCTGATCCCGCTACCAGAATAAGC-ATACCAGAGATC 958
Query 949 ACATCCGATAAATGGTTCTTGAAGAATCTTCCAGGTGATTTGATGGATGAGAACAGA-AT 1007
| | || ||| ||||||||||||||||| || | |||| | ||| | |||| || | |
Sbjct 959 AAAACCCATAGTTGGTTCTTGAAGAATCTCCCTGCTGATCTAATGAACGAGAGCA-ACAC 1017
Query 1008 GGGTAGTCAGTTTCAAGAGCCTGAGCAGCCGATGCAGAGCCTTGACACGATTATGCAGAT 1067
|| || ||||| || |||||||| || || ||||| ||||||||||| || ||||| ||
Sbjct 1018 AGGAAGCCAGTTCCAGGAGCCTGAACAACCAATGCAAAGCCTTGACACAATCATGCAAAT 1077
Query 1068 AATATCAGAGGCTACGATTCC-GACTGTTCGTAATCGTTGCCTTGATGATTTCATGGCGG 1126
|| || || || || ||||| | ||||||| || |||||||| || ||||||||| | |
Sbjct 1078 CATCTCTGAAGCCACAATTCCCG-CTGTTCGAAACCGTTGCCTAGACGATTTCATGACTG 1136
Query 1127 ATAATCTTGATCTAGATGATGACATGGATGACTTTGATTCCGAATCTGAGATTGATGTTG 1186
| ||||||||||| || |||||||||||||||||||| || |||||||| || || |||
Sbjct 1137 ACAATCTTGATCTTGACGATGACATGGATGACTTTGACTCTGAATCTGAAATCGACATTG 1196
Query 1187 ACAGTAGTGGAGAGATAGTTTATGCTCTCT 1216
||||||| |||||||||||||| |||||||
Sbjct 1197 ACAGTAGCGGAGAGATAGTTTACGCTCTCT 1226
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69477554280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5