BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485400
Length=904
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50520.1 | Symbols: | Phosphoglycerate mutase family protei... 1127 0.0
> AT3G50520.1 | Symbols: | Phosphoglycerate mutase family protein
| chr3:18748023-18749593 FORWARD LENGTH=903
Length=903
Score = 1127 bits (610), Expect = 0.0
Identities = 720/771 (93%), Gaps = 16/771 (2%)
Strand=Plus/Plus
Query 148 GGTCATTTGGATGTTGAGTTAAACGATGCTGGAAGACAACAAGCAGAGAGAGTTGCGGAG 207
||||||||||||||||||||||| ||||| ||||||||||||||| | |||||||| |||
Sbjct 135 GGTCATTTGGATGTTGAGTTAAATGATGCAGGAAGACAACAAGCACAAAGAGTTGCAGAG 194
Query 208 CGGTTATCGAAGGAGCTGAAGATATCTCATGTCTACTCTTCTGACTTGAAGAGAGCCTTT 267
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 195 CGGTTATCGAAGGAGCAGAAGATATCTCATGTATACTCTTCTGACTTGAAGAGAGCCTTT 254
Query 268 GAGACTGCTCAGATCATTGCTGCTAAATGTGGCAAGCTTGAGGTACTTACTGATCGTGAT 327
||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 255 GAGACTGCTCAGATCATTGCTGCTAAATGCGGCAAGCTTGAGGTGCTTACCGATCGTGAT 314
Query 328 TTACGGGAAAGGCATTTAGGAGATATGCAAGGGCTTGTGTATCAAGAAGCTTCGAAAATT 387
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 TTGCGGGAAAGACATTTAGGAGATATGCAAGGGCTTGTGTATCAAGAAGCTTCGAAAATT 374
Query 388 CGCCCGGAAGCTTACAAGGCCTTTTCATCTAACCGCACAGACGTTGATATTCCAGGTGGA 447
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 375 CGCCCGGAAGCTTACAAGGCTTTTTCATCTAACCGCACAGACGTTGATATTCCAGGTGGA 434
Query 448 GGAGAAAGTCTTGATAAACTTTACGACAGATGTACATCTGCATTACAGAGAATCGGCGAC 507
|||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 435 GGAGAAAGTCTTGACAAACTTTACGATAGATGTACAACTGCATTACAGAGAATCGGCGAC 494
Query 508 AAACATAAAGGTGAAA-GAGTAGTAGTAGTGACTCATGGAGGTGTGATTCGATCTCTAC- 565
|||||||||||||||| || |||||||||||||||||||||||||||| |||||||| |
Sbjct 495 AAACATAAAGGTGAAAGGA-TAGTAGTAGTGACTCATGGAGGTGTGATCCGATCTCT-CT 552
Query 566 ACGAAAGAGCTCGTCCAAGTGCAAGAAAAGTTGAAAAGATACTCAATACATCGGTCAATG 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 ACGAAAGAGCTCGTCCAAGTGCAAGAAAAGTTGAAAAGATACTCAATACATCGGTCAATG 612
Query 626 TGTTCCGTTTATTCGATGGAGAGAAATGGACTATCCAAGTTTGGGGCGATGTGAGTCATC 685
|||||||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 613 TGTTCCGTTTATTCGACGGAGACAAATGGACCATCCAAGTTTGGGGTGATGTGAGTCATC 672
Query 686 TCGACCAAACCGCCTTCTTACAATCAGGTTTTGGTGGTGATAGAACCTCTGGCTAGA--- 742
| || |||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 673 TGGAGGAAACCGGCTTCTTACAATCAGGTTTTGGTGGTGATAGAACCTCTGGTTAGAGAG 732
Query 743 -TTCTATACTCTT---CTTCT-CC--TTGGAGGAGCATTTATGTAATTTAAGTTTCACTC 795
|||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 733 ATTCTATACTCTTAGTCTTCTTCCCCTTGGAAGAGCATTTATGTAATTTAAGTTTCACTC 792
Query 796 CTTAACTTTACAATTTA-AACATTTGACCCCATAACTTTGATAAAGTAATT-GGGAGGAT 853
| ||||||| |||||| ||||||||||||||| ||||||||||||| ||| ||||||||
Sbjct 793 CATAACTTTTCAATTTTTAACATTTGACCCCATTACTTTGATAAAGTGATTTGGGAGGAT 852
Query 854 TGATAAAGTAAATTACTATAAATTTCAACAGTCAAAGGTTATATGGTTCAC 904
|||||||||||||| ||||||||||| ||||||||| ||||||||||||||
Sbjct 853 TGATAAAGTAAATTGCTATAAATTTCTACAGTCAAATGTTATATGGTTCAC 903
Score = 165 bits (89), Expect = 7e-40
Identities = 107/115 (93%), Gaps = 3/115 (3%)
Strand=Plus/Plus
Query 1 TCAGCATCTCCCATGGAGGAATCAAGATTCGATTGTGAAGAAGATCTTGATTATGCTGAG 60
|||||||||||||||||||||||||||||||||| |||||| | | | ||||||||||||
Sbjct 24 TCAGCATCTCCCATGGAGGAATCAAGATTCGATTCTGAAGATG-T-T-GATTATGCTGAG 80
Query 61 ATTGTTGTTGTTCGTCATGGAGAGACATCTTGGAATGCAGAGAGAAAAATCCAGG 115
|||||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 81 ATTGTTGTTGTTCGTCATGGTGAAACATCTTGGAATGCCGAGAGAAAAATCCAGG 135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44155815213
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5