BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485401
Length=2275
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50530.2 | Symbols: CRK | CDPK-related kinase | chr3:1875354... 1609 0.0
> AT3G50530.2 | Symbols: CRK | CDPK-related kinase | chr3:18753541-18756773
FORWARD LENGTH=2477
Length=2477
Score = 1609 bits (871), Expect = 0.0
Identities = 1109/1212 (92%), Gaps = 64/1212 (5%)
Strand=Plus/Plus
Query 1 TAATTAAAAAGCGAACGTATCGTCGTTTCTCTTTTTAACTCATTCTCTTTGGATCCAAAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 TAATTAAAAAGCGAACGTATCGTCGTTTCTCTTTTTAACTCATTCTCTTTGGATCCAAAT 62
Query 61 CTTTCGCTTTGGAATTCGCCATTGACAAAGGAGACACTTCCAAAACAAAGAATAAGCAAA 120
|||||||||||||||||||||||||||||| | || |||||||||||||||||||||||
Sbjct 63 CTTTCGCTTTGGAATTCGCCATTGACAAAGTACTCAATTCCAAAACAAAGAATAAGCAAA 122
Query 121 -A-------TTT--A-T------AAAAATT--------C-AGtttttatttttgcaagat 154
| ||| | | ||||||| | ||||||||| ||||||||||
Sbjct 123 CAACAACAATTTTCACTTCCTTCAAAAATTATAAAAATCCAGTTTTTATCTTTGCAAGAT 182
Query 155 tcaaaagtttgaatttttacttgt---g------gg-tttt-t--g-------atttCGA 194
|||||||||||||||||||||||| | || |||| | | ||||||
Sbjct 183 TCAAAAGTTTGAATTTTTACTTGTTTTGATTTCTGGGTTTTGTTTGTTTTTTGATTTCGG 242
Query 195 TAATGATACAATTCAGATTTTGATT-CGTGTGATGTTGAGAGAGATTCGTAA-TGGGTCT 252
||||||||||||| ||||||||||| ||||||||||||||||| ||| ||| |||||||
Sbjct 243 TAATGATACAATTGAGATTTTGATTTCGTGTGATGTTGAGAGA--TTCTTAAATGGGTCT 300
Query 253 CTGTACTTCGAAACCGAATTCACCTAATTCCGATCAAATTCCGGCGAGGAATAGTCCACT 312
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 301 ATGTACTTCGAAACCGAATTCATCTAATTCCGATCAAACTCCGGCGAGGAATAGTCCACT 360
Query 313 TCCGGCGTCGGAATCCGTCAAGCCTTCAAGCTCT------AATG---AAGATCAGTGTGT 363
||||||||| ||||||||||||||||| |||||| |||| |||||||||||||
Sbjct 361 TCCGGCGTCTGAATCCGTCAAGCCTTCGAGCTCTTCCGTTAATGGTGAAGATCAGTGTGT 420
Query 364 AACAAC---GAACAATGAGGGAAAAAAGTCTCCGTTTTTCCCTTTTTATAGTCCGAGTCC 420
|||||| ||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 421 AACAACAACGAACAATGAAGGCAAAAAGTCTCCGTTTTTCCCTTTTTATAGTCCAAGTCC 480
Query 421 AGCTCACTATTTCTTCTCCAAGAAGACTCCGGCGAGATCTCCGGCGACTAATTCGACTAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGCTCACTATTTCTTCTCCAAGAAGACTCCGGCGAGATCTCCGGCGACTAATTCGACTAA 540
Query 481 TTCGACTCCGAAGCGATTCTTTAAACGACCGTTTCCTCCTCCGTCTCCGGCGAAACACAT 540
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 541 TTCGACTCCGAAGCGATTCTTTAAACGGCCGTTTCCTCCTCCGTCTCCGGCTAAACATAT 600
Query 541 CAGAGCTGTTTTAGCGAGAAGGCATGGCTCTGTGAAGCCTAATTC-TGCGGCGATCCCTG 599
||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||
Sbjct 601 CAGAGCTGTTTTAGCGAGAAGGCATGGTTCTGTGAAGCCTAATTCGT-CGGCGATCCCTG 659
Query 600 AAGGTAGTGAAGCTGAAGGAGGTGGTGTTGGATTGGATAAAAGCTTTGGTTTTTCCAAGA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AAGGTAGTGAAGCTGAAGGAGGTGGTGTTGGATTGGATAAAAGCTTTGGTTTTTCCAAGA 719
Query 660 GCTTTGCGAGTAAGTATGAGCTTGGTGATGAAGTTGGTCGTGGTCATTTTGGATATACTT 719
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 720 GTTTTGCGAGTAAGTATGAGCTTGGTGATGAAGTTGGTCGTGGTCATTTTGGTTATACTT 779
Query 720 GTGCTGCTAAGTTTAAGAAAGGTGATAATAAAGGACAACAAGTCGCTGTTAAAGTTATCC 779
||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| || |
Sbjct 780 GTGCTGCTAAGTTTAAGAAGGGTGATAATAAAGGTCAACAAGTCGCGGTTAAAGTCATTC 839
Query 780 CCAAAGCAAAGATGACGACGGCTATTGCAATTGAAGATGTGAGGAGGGAAGTGAAGATAT 839
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 840 CCAAAGCAAAGATGACGACGGCTATTGCAATTGAAGATGTGAGAAGGGAAGTGAAGATAT 899
Query 840 TGAGGGCTTTGTCTGGTCATAACAATCTTCCTCATTTCTATGATGCTTATGAGGATCATG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGAGGGCTTTGTCTGGTCATAACAATCTTCCTCATTTCTATGATGCTTATGAGGATCATG 959
Query 900 ATAATGTCTATATAGTGATGGAGCTATGTGAAGGAGGAGAGCTTTTGGATAGAATACTTT 959
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 960 ATAATGTCTATATAGTGATGGAACTATGTGAAGGAGGAGAGCTTTTGGATAGAATACTTT 1019
Query 960 CAAGAGGTGGGAAATACACAGAGGAGGATGCAAAGACTGTTATGATACAAATATTGAATG 1019
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1020 CAAGAGGTGGGAAGTACACAGAGGAGGATGCAAAGACCGTTATGATACAAATATTGAATG 1079
Query 1020 TGGTTGCCTTTTGTCATCTCCAAGGTGTTGTACACAGAGATCTTAAACCAGAGAATTTTC 1079
||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1080 TGGTTGCTTTTTGTCATCTGCAAGGCGTTGTACACAGAGATCTTAAACCAGAGAATTTTC 1139
Query 1080 TCTTTACCTCAAAAGAAGACACCTCTCAGTTAAAGGCAATAGATTTTGGTTTGTCGGATT 1139
| |||||||||||||||||||||||||| || |||||||||||||| |||||||| ||||
Sbjct 1140 TTTTTACCTCAAAAGAAGACACCTCTCAATTGAAGGCAATAGATTTCGGTTTGTCAGATT 1199
Query 1140 ACGTGAGACCAG 1151
||||||||||||
Sbjct 1200 ACGTGAGACCAG 1211
Score = 1511 bits (818), Expect = 0.0
Identities = 899/939 (96%), Gaps = 2/939 (0%)
Strand=Plus/Plus
Query 1149 CAGATGAGAGGCTCAATGACATTGTTGGCAGTGCATACTATGTAGCACCTGAAGTTCTAC 1208
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1302 CAGATGAGAGGCTCAATGACATTGTTGGTAGTGCATACTATGTAGCACCTGAAGTTCTGC 1361
Query 1209 ATAGATCTTACAGTACAGAAGCTGATATTTGGAGTGTTGGAGTGATTGTGTATATTCTAT 1268
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1362 ATAGATCTTACAGTACAGAAGCTGATATTTGGAGTGTTGGTGTGATTGTATATATTCTAT 1421
Query 1269 TGTGTGGAAGCCGACCGTTTTGGGCTAGGACAGAATCAGGAATATTTCGTGCTGTTCTAA 1328
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1422 TGTGTGGAAGCCGACCGTTTTGGGCTAGGACAGAATCAGGAATCTTTCGTGCTGTTCTAA 1481
Query 1329 AAGCAGATCCGAGTTTTGATGACCCTCCTTGGCCTTTGTTATCTTCAGAGGCAAGAGATT 1388
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482 AAGCTGATCCAAGTTTTGATGACCCTCCTTGGCCTTTGTTATCTTCAGAGGCAAGAGATT 1541
Query 1389 TTGTAAAGCGGTTGCTAAACAAAGACCCGCGTAAAAGATTAACAGCTGCTCAAGCCTTAA 1448
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1542 TTGTAAAGCGGTTGCTAAACAAAGATCCGCGTAAAAGATTAACAGCTGCTCAAGCCTTAA 1601
Query 1449 GTCATCCATGGATAAAAGACTCTAATAACGCAAACGTTCCATTGGATATTCTGGTTTTCA 1508
|||||||||||||||| ||||| || ||||||| |||||| ||||||||||||||||||
Sbjct 1602 GTCATCCATGGATAAAGGACTCAAACGACGCAAAGGTTCCAATGGATATTCTGGTTTTCA 1661
Query 1509 AACTTATGAGAGCTTATTTACGATCATCATCTCTTCGTAAAGCTGCATTAAGGGCCTTGT 1568
|||||||||||||||||||||||||||||||||| ||||||||||||||||| || || |
Sbjct 1662 AACTTATGAGAGCTTATTTACGATCATCATCTCTCCGTAAAGCTGCATTAAGAGCTTTAT 1721
Query 1569 CGAAAACACTTACAGTGGATGAATTGTTTTATCTGAGGGAGCAGTTTGCGTTACTAGAAC 1628
||||||||||||| || |||||| ||||||||||||| ||||||||||| || ||||||
Sbjct 1722 CGAAAACACTTACGGTTGATGAACTGTTTTATCTGAGAGAGCAGTTTGCTTTGTTAGAAC 1781
Query 1629 CTAGTAAAAACGGAACCATAAGTCTAGAAAACATCAAATCAGCTCTGATGAAAATGGCAA 1688
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1782 CTAGTAAGAACGGAACCATAAGTCTAGAAAACATCAAATCAGCTCTGATGAAAATGGCAA 1841
Query 1689 CAGATGCAATGAAGGATTCGCGTATTCCAGAATTCTTAGCACAACTGAGTGCTCTTCAAT 1748
||||||| |||||||| || ||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1842 CAGATGCGATGAAGGACTCACGTATTCCAGAGTTCTTAGGACAACTGAGTGCTCTTCAAT 1901
Query 1749 ATAGAAGAATGGACTTTGAGGAATTCTGTGCAGCGGCATTGAGTGTTCACCAGCTAGAAG 1808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1902 ATAGAAGAATGGACTTTGAGGAATTCTGTGCAGCGGCATTGAGTGTTCACCAGCTAGAAG 1961
Query 1809 CTCTTGATCGATGGGAACAACACGCTCGTTGTGCTTATGAGCTTTTCGAAAAGGAAGGAA 1868
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1962 CTCTTGATCGATGGGAACAACACGCTCGTTGTGCTTATGAGCTTTTCGAAAAGGAAGGGA 2021
Query 1869 ACCGACCTATCATGATCGATGAACTCGCTTCGGAACTTGGTCTTGGTCCTTCTGTACCGG 1928
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2022 ACCGACCAATCATGATCGATGAACTCGCTTCGGAACTTGGTCTTGGCCCTTCTGTACCGG 2081
Query 1929 TTCACGCAGTGCTTCACGATTGGCTTAGGCATACGGATGGGAAGCTTAGCTTTCTCGGAT 1988
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 2082 TTCACGCAGTGCTTCACGATTGGCTTAGACATACCGATGGGAAGCTTAGCTTTCTCGGAT 2141
Query 1989 TTGTGAAATTGCTACATGGTGTGTCTAGCCGCACGATCAAAGCTCATTAGAAGGGTTTTG 2048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2142 TTGTGAAATTGCTACATGGTGTGTCTAGCCGCACGATCAAAGCTCATTAGAAGGGTTTTG 2201
Query 2049 AAACTT-GCAATGATATGTATGAAATCTGTCTGAGGTCT 2086
|||||| | ||||||||||||||||| |||||||| |||
Sbjct 2202 AAACTTTG-AATGATATGTATGAAATTTGTCTGAGCTCT 2239
Score = 233 bits (126), Expect = 5e-60
Identities = 174/195 (89%), Gaps = 11/195 (6%)
Strand=Plus/Plus
Query 2089 TTTTGTTATGAAAGCTGAGAAGCAAAGATaaaaaaaaaaaaaaGAGTGTAGC-AAAGAA- 2146
||||||||||||||||||||||||||||| | ||||||||| ||||||||| ||| ||
Sbjct 2282 TTTTGTTATGAAAGCTGAGAAGCAAAGAT-TATAAAAAAAAATGAGTGTAGCAAAAAAAG 2340
Query 2147 AGAGAAGTGTGTTAGTTTTTGTAGAGAATG--ATGATATTTT-TCCAAACTTGGTAACTT 2203
||||||||||||||| |||||||||||||| |||||||||| ||||| ||||||||||
Sbjct 2341 AGAGAAGTGTGTTAG-TTTTGTAGAGAATGATATGATATTTTCCCCAAATTTGGTAACTT 2399
Query 2204 ATGACGATTGATGATGtttctgacatttctagatttt--ttattttaacaccaatcttat 2261
||||||||||||||| |||||||||||| |||||||| || |||| |||||||||||||
Sbjct 2400 ATGACGATTGATGATATTTCTGACATTTTTAGATTTTGCTTTTTTTGACACCAATCTTAT 2459
Query 2262 tttccaa-ttttttt 2275
|| |||| |||||||
Sbjct 2460 TT-CCAAATTTTTTT 2473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112901025705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5