BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg485402

Length=440
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G50550.1 | Symbols:  | unknown protein; Has 75703 Blast hits...   468    2e-131


> AT3G50550.1 | Symbols:  | unknown protein; Has 75703 Blast hits 
to 19796 proteins in 1115 species: Archae - 327; Bacteria 
- 34383; Metazoa - 14453; Fungi - 7466; Plants - 2586; Viruses 
- 958; Other Eukaryotes - 15530 (source: NCBI BLink). | 
chr3:18759465-18760510 FORWARD LENGTH=592
Length=592

 Score =  468 bits (253),  Expect = 2e-131
 Identities = 362/410 (88%), Gaps = 25/410 (6%)
 Strand=Plus/Plus

Query  1    tttttttGAAATTTCCATGGCGGACGAGATGGAGATCATCGTTATATATAGCTCGGATGA  60
            ||||||||||||||||||||||||||| | ||||||| ||| ||| |||||||| |||||
Sbjct  6    TTTTTTTGAAATTTCCATGGCGGACGAAAAGGAGATCGTCGATATTTATAGCTCAGATGA  65

Query  61   GG---A--A-GAAGA--A-GA--A-GATGATGATATCGATGGCGAGAGTA--G-C---GA  102
            ||   |  | |||||  | ||  | |||||||||| ||||||||||||||  | |   ||
Sbjct  66   GGAATACGACGAAGACGATGATGATGATGATGATACCGATGGCGAGAGTAGCGACGAAGA  125

Query  103  C---GAAGAAGAAGATCGGAATCTGAGTGGAGATGATAGCGAATCAAGCgaagatgatta  159
            |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  126  CGATGAAGAAGAAGATCGGAATCTGAGTGGAGATGATAGCGAATCAAGCGAAGATGATTA  185

Query  160  tactgattcgaattcggattctgatgacgatgaagaagatgatgatgatgatgatgatga  219
             ||||||||||||||||||||||||||||| || ||||| |||||||||||||| || ||
Sbjct  186  CACTGATTCGAATTCGGATTCTGATGACGACGATGAAGAAGATGATGATGATGAGGAGGA  245

Query  220  t-AACGAAGACGAAGACTCTCTTGTAGATAAAGTCACTCGTCTACTCAAAGGGAAACAAG  278
              || ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct  246  GGAA-GAAGAAGAAGACTCCCTTGTTGATAAAGTCACTCGTCTACTCAAAGGGAAACAAG  304

Query  279  ATTGACTCATAAACATTTCTTAGCTGAGAAGCTTTTTT-AAGGGGTAAAAGATAGGAGCA  337
            |||||||| || |||||||||||||||||||||||||| ||||  |||||| ||||||||
Sbjct  305  ATTGACTCGTACACATTTCTTAGCTGAGAAGCTTTTTTTAAGGA-TAAAAGGTAGGAGCA  363

Query  338  TTAAAGAAGCAGTTTATCAAAGATCATCTATTGCAAAGGTAAATCATATA  387
            | |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  364  TGAAAGAAGCAGTTTATCAAAGATCATCTATTGCTAAGGTAAATCATATA  413


 Score = 87.9 bits (47),  Expect = 7e-17
 Identities = 51/53 (96%), Gaps = 0/53 (0%)
 Strand=Plus/Plus

Query  387  ATTTGTTAATGAAAGGGAGATTATTGTTCTCTTCACACTTATATAAGTTTCTT  439
            ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct  455  ATTTGTTAATGCAATGGAGATTATTGTTCTCTTCACACTTATATAAGTTTCTT  507



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20911383584


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5