BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485404
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50570.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 1120 0.0
> AT3G50570.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr3:18766749-18767529 REVERSE LENGTH=781
Length=781
Score = 1120 bits (606), Expect = 0.0
Identities = 707/754 (94%), Gaps = 13/754 (2%)
Strand=Plus/Plus
Query 1 aaaaaaaaTCCTTTGTTTACATCGCCTTAACACCATGAAGACCGTCATAATCATTGTAGC 60
|||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||
Sbjct 9 AAAAAAAATCCTTTGTTTACATCGCCGTAACACCATGAAGAGCGTCATTGTCATTGTAGC 68
Query 61 TCTCCTATGCATCGTCTCTCTTCCAAACCCTACCGTCGGATCAACAAAGAAACCGTGGCC 120
|||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 69 TCTCCTATGCCTCGTCTCTCTCCCAAACCCTACCGTCGGATCAACAAAGAAACCATGGCC 128
Query 121 TAAGCCATCCGATCTAGCCAA-CAACAATAACAACTTCGGTGACTCTAAGGTTGGTTGGG 179
|||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 129 TAAGCCGTCCGATCTAGCCAATC-ACAATAACAACTTCGGTGACTCTAAGGTTGGTTGGG 187
Query 180 CTTGCTCCTCCTCTTCAGACCCCAACGCTCCTCCTTCACCTCCCGGCTCGTTCCCTAATA 239
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 188 CTTGCTCCTCCTCTTCAGACCCCAACACTCCTCCTTCACCTCCCGGCTCGTTCCCTAATA 247
Query 240 TCCCCAAAATCCCGGGAATACCAAACATCCCTTTTCCAAACATTCCGGGAATCCCGATGC 299
||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||| || |
Sbjct 248 TCCCCCAAATCCCGGGAATACCAAACATCCCGTTTCCCAACATTCCGGGAATCCCAATAC 307
Query 300 CTAACATCCCGGGACTCCCTAACATCCCTGGACTTCCAGGTCCTCCGTTTGAGTCTCTTC 359
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 CTAACATCCCTGGACTCCCTAACATCCCTGGACTTCCAGGTCCTCCGTTTGAGTCTCTTC 367
Query 360 TCGTGTCGCAATCAGGTGAGTTAGAGAAGTGTTTGTCCAAAGATGGGTCGAAAACGAACG 419
||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| || |
Sbjct 368 TCGTGTCGCAATCCGGTGAGTTAGAGAAATGTTTGTCTAAAGATGGGTCGAAAACTAATG 427
Query 420 AGAAATGTTTCTCGCAAATATTTTCGAGTTGGGCGGAGAATGATTTCGCATTGGACAAAG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 AGAAATGTTTCTCGCAAATATTTTCGAGTTGGGCGGAGAATGATTTCGCATTGGACAAAG 487
Query 480 AGTGTTGTGAGGTCATAGTGAATATGAACAAGAGGTGTTACGGTCATCTTCACATGATGT 539
| ||||||||| |||| ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 488 AATGTTGTGAGATCATTGTGAATATGAACAAGAGGTGTTATGGCCATCTTCACATGATGT 547
Query 540 TTAAGAGTCATTTCTTTGCTCCTCTCCTTCAATACTCTTGTCACATCAAGCATGCCAAGA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 TTAAGAGTCATTTCTTTGCTCCTCTCCTTCAATACTCTTGTCACATCAAGCATGCCAAGA 607
Query 600 ACTAAACACA-TCTACCTCAAGCAC--C-T-CCTCCAtttagttttttttttcttcttat 654
||||| || | ||| || || ||| | | ||||||||||||||| ||| | |||||
Sbjct 608 ACTAAGCA-AGTCTTCCACACGCAATTCGTTCCTCCATTTAGTTTTCTTT--C--CTTAT 662
Query 655 ttttagttttgttagggttttg-ttttgttttgtCCATTTCTCATGGGCGTATCTTGATT 713
|||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||
Sbjct 663 TTTTAGTTTTGTTAGGGTTTTGATTTTGTTTTGTCCATTTCTCATGGACATATCTTGATT 722
Query 714 TGTTCGTCGTTTAATTAATAAAATTATAGTTTTT 747
|||||||||||||||||||||||| |||||||||
Sbjct 723 TGTTCGTCGTTTAATTAATAAAATCATAGTTTTT 756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36269054134
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5