BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485405
Length=782
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50580.1 | Symbols: | LOCATED IN: endomembrane system; EXPR... 588 3e-167
> AT3G50580.1 | Symbols: | LOCATED IN: endomembrane system; EXPRESSED
IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal
differentiation and expansion stage; BEST Arabidopsis thaliana
protein match is: ECA1 gametogenesis related family protein
(TAIR:AT1G44191.1); Has 132049 Blast hits to 55074 proteins
in 2314 species: Archae - 393; Bacteria - 25609; Metazoa
- 44661; Fungi - 17591; Plants - 17316; Viruses - 4153; Other
Eukaryotes - 22326 (source: NCBI BLink). | chr3:18768631-18769519
REVERSE LENGTH=889
Length=889
Score = 588 bits (318), Expect = 3e-167
Identities = 401/437 (92%), Gaps = 21/437 (5%)
Strand=Plus/Plus
Query 301 CCA-CCAACACCCAAGAAGTCTCCATCTCCGCCTTCAACACCGTCGTCTCTTCCACCTCC 359
||| ||||| |||||||||||||||||||||||| ||||| | ||||||||||||||||
Sbjct 354 CCATCCAACGCCCAAGAAGTCTCCATCTCCGCCTCCAACA-C--CGTCTCTTCCACCTCC 410
Query 360 AACACCCAAGAAGTCTCCATCTACACCTTCAACACCGTCTCTTCCACCTCCAACACCCAA 419
| | ||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 411 AGCGCCCAAGAAG------TCT---CCTTCAACACCGTCTCTTCCACCTCCAACACCCAA 461
Query 420 GAAGTCTCCATCTCTGCCACCAAGTGATGATCACTCATCATCTCCAAT-AAATCCACCTC 478
|||||||||| ||| |||||||| | | |||||||||||||||| || |||||||||||
Sbjct 462 GAAGTCTCCACCTCCGCCACCAA--G-TCATCACTCATCATCTCC-ATCAAATCCACCTC 517
Query 479 ATCATCAACAGAATCCATGGGAACACATGGAGAGCTGTATGAGAAACATGGGACCTGTTG 538
|||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||
Sbjct 518 ATCATCAACAGAATCCATGGGAACACATCGAGAGATGTATGATAAACATGGGACCTGTTG 577
Query 539 GGATGTGTCGGATGCAGATGGAGGTCAGTTTCTACACGAGGTTGTTT-AGTGTTAGTGAC 597
|||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||
Sbjct 578 GGATGTGTCGGATGCAGATGGAAGTCAGTTTCTACACGAGGTTGTTTCA-AGTTAGTGAC 636
Query 598 TATTGTTGCAACCTTGTTGTCAACATGGAAAGTGAATGTGACGACGTCGCTTGGGGATTC 657
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 637 TATTGTTGCAACCTTGTTGTCAACATGAAAAGTGAATGTGACGACGTCGCTTGGGGATTC 696
Query 658 TTCAACGATCCTTTCTTTGTTCCTCTTGTTCGTTACACTTGCCATGTCACCTGCTAGTTT 717
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 TTCAACGACCCTTTCTTTGTTCCTCTTGTTCGTTACACTTGCCATGTCACCTGCTAGTTT 756
Query 718 CTCTTCTTTATTTGTTT 734
|||||||| |||||||
Sbjct 757 CTCTTCTTC-TTTGTTT 772
Score = 580 bits (314), Expect = 5e-165
Identities = 394/432 (91%), Gaps = 8/432 (2%)
Strand=Plus/Plus
Query 1 ATGAAAAACTCCATGGTGCTTGTAGCGGCAGCTTTTCTTTGCCTTGCCGCTTTTCCGACC 60
||||||| |||||| |||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1 ATGAAAACCTCCATCGTGCTTGTAGCGGCAGCTTTTCTTTGTCTTGTGGCTTTTCCGACC 60
Query 61 ACAACCGTCGGAAAATATTGGCCAAAAATCGAAGGATGGCCAAATCCGTCTGAAATCTCT 120
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||
Sbjct 61 ACAACCGTCGGAAAATACTGGCCAAAAATCGAAGGATGGCCAAACCCGTCTGAAATCACT 120
Query 121 AGAAACGAACTGATGTTTTTGAACACTGGCCATAGTTTCAGCTATGGAGATTCCAAAGTC 180
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 AGAAACGAACTGATGCTTTTGAACACTGGCCATAGTTTCGGCTATGGAGATTCCAAAGTC 180
Query 181 TGGAAATGTACTTATAGCAACGGATCTGCTCCAGCCATCTCCATTTCTCCATCAACGCCC 240
|||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 181 TGGAAATGTACTTATAGCAACGGATCTGCTCCTGCCATTTCTATTTCTCCATCAACGCCG 240
Query 241 TTTCCGTCGACTCCATCAAAACCGTCTCCTCCTCCTCCAGCTCCCAAAAAGTCTCCGCCG 300
||||||| |||||||||| |||||||||||||||||||||||| ||||||||||| ||
Sbjct 241 ATTCCGTCAACTCCATCAACACCGTCTCCTCCTCCTCCAGCTCCTAAAAAGTCTCCCCCA 300
Query 301 CCACCAACACCCAAGAAGTCTCCATCTCCGCCTTCA--A-CACCGTCGTCTCTTCCACC- 356
|| ||||| || |||||||||||||||||||||||| | |||||| | | |||| ||
Sbjct 301 CCGCCAACGCCAAAGAAGTCTCCATCTCCGCCTTCATTAACACCGT--T-TGTTCC-CCA 356
Query 357 TCCAACACCCAAGAAGTCTCCATCTACACCTTCAACACCGTCTCTTCCACCTCCAACACC 416
|||||| |||||||||||||||||| | ||| ||||||||||||||||||||||| | ||
Sbjct 357 TCCAACGCCCAAGAAGTCTCCATCTCCGCCTCCAACACCGTCTCTTCCACCTCCAGCGCC 416
Query 417 CAAGAAGTCTCC 428
||||||||||||
Sbjct 417 CAAGAAGTCTCC 428
Score = 69.4 bits (37), Expect = 5e-11
Identities = 45/48 (94%), Gaps = 3/48 (6%)
Strand=Plus/Plus
Query 331 CCTTCAACACCGTCGTCTCTTCCACCTCCAACACCCAAGAAGTCTCCA 378
||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 427 CCTTCAACA-C--CGTCTCTTCCACCTCCAACACCCAAGAAGTCTCCA 471
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38027249279
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5