BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485408
Length=1366
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50620.1 | Symbols: | P-loop containing nucleoside triphosp... 2023 0.0
> AT3G50620.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:18784695-18786914
REVERSE LENGTH=1488
Length=1488
Score = 2023 bits (1095), Expect = 0.0
Identities = 1299/1391 (93%), Gaps = 40/1391 (3%)
Strand=Plus/Plus
Query 1 CTTCTTCTTCTTCTTTAGATTCTCTGTAGCTTGAAGTGGATTCATTAATCTATAATCTCG 60
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 43 CTTCTTCTTCTTCTTTAGATTCTCTGTAGCTTGAAGTGGATTCATGAATCTGTAATCTCG 102
Query 61 TCTCTGTATCT-AAAAGCTTCTGCTTTT-ACATTATCTCTGTTTCATAAGCTTCTACAAG 118
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 103 TCTCTGTATCTAAAAAGCTTCTGCTTTTAACATTATCTCTGTTTCATAAGCTTCTAGAAG 162
Query 119 CTTCAATGGCGGAGTATATCTGTTTATTCGGCAAGGATAGTGCAGCGATTGTTATAAAGC 178
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 163 CTTCAATGGCGGAGTATATCTGTTTATTCGGCAAGGACAGTGCAGCGATTGTTATAAAGC 222
Query 179 AACCAAAGAAATCACCATTGTTCTTAAGGATGATTGTTTTGGTGGTTGCTATGGTTTGTG 238
||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||
Sbjct 223 AACCAAAGAAATCACCATTATTCTTAAGGATGATTGTTTTAGTGTTTGCTATGGTTTGTG 282
Query 239 GTCTCTACATTTGCTCTGTTTGCTTAAAACAGTTAAGTAATGTCAGCTTCCAAAGCTCAC 298
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 283 GTCTCTACATTTGCGCTGTTTGCTTAAAACAGTTAAGTAATGTCAGCTTCCAAACCTCCC 342
Query 299 AACTTGTCCAAACTACTCCTTTTGATTCTCACTCATTACGCTTTGTTACTCGGATTCATT 358
||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 343 AACTTGTCCAAACTAGTCCTATTGATTCTCACTCGCTACGCTTTGTTACTCGGATTCATT 402
Query 359 ACCCAAAGCCTCAGACTTTTAATAGAGCTGAATGTGGACATAATCCGGTGAGGTACTTTG 418
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 ATCCAAAGCCTCAGACTTTTAATAGAGCTGAATGTGGACATAATCCGGTGAGGTACTTTG 462
Query 419 CGATACTGTCGATGCAGAGATCAGGAAGCGGTTGGTTCGAAACATTGTTGAATAGTCATA 478
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 CGATATTGTCGATGCAGAGATCAGGAAGCGGTTGGTTCGAAACATTGTTGAATAGTCATA 522
Query 479 GCAATGTGAGTTCTAATGGAGAGATTTTCTCGGTTTTGGATCGAAGGAAAAACATTTCTT 538
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 523 ACAATGTGAGTTCTAATGGAGAGATTTTCTCTGTTTTGGATCGAAGGAAAAACATTTCTT 582
Query 539 CAATCATTCAGACTCTTGATAGAGTTTATAATCTTGATTGGTTCACAAGTGCTTCAAAGA 598
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 583 CAATCATTCAGACTCTTGATAGAGTTTATAATCTTGATTGGTTTACGAGTGCTTCAAAGA 642
Query 599 ACGAATGCTCTGCTGCTATTGGATTCAAATGGATGCTTAACCAGGGTTTGTTGGACAACC 658
||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 643 ACGAATGTTCTGCTGCTATTGGTTTCAAATGGATGCTTAACCAGGGTTTGTTGGAGAACC 702
Query 659 ATAAAGAAATAGTAGATTACTTTAACCGAAGAGGCGTCTC-GACGATATTTCTGTTTAGA 717
||||||| |||||||| ||||||||||||||||||||||| | |||||||||||||||||
Sbjct 703 ATAAAGACATAGTAGAGTACTTTAACCGAAGAGGCGTCTCTG-CGATATTTCTGTTTAGA 761
Query 718 AGGAATCCTCTAAGAAGAATGGTTTCTGTGTTGGCAAATTCGTATGACCGTTATGCTAAG 777
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 762 AGGAATCCTTTAAGAAGAATGGTTTCTGTGTTGGCAAATTCTTATGACCGTTATGCTAAG 821
Query 778 CTTTTGAATGGAACTCACAAGTCTCATGTTCATTCTCCTGCAGAGGCAGATGCACTTTCT 837
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 CTTTTGAATGGAACTCATAAGTCTCATGTTCATTCTCCTGCAGAGGCAGATGCACTTTCT 881
Query 838 AGATATAAGCCGGTAATCAACTCGACATCGTTGATCCACGATTTACAAGAAACAGAGAAC 897
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 AGATATAAGCCGGTAATCAACTCGACATCGTTGATCCACGATTTACAAGAAACAGAGAAT 941
Query 898 TCAGCTGCAAAGGCTTTAGAATATTTCAATACAACACGTCATATCGTTGTCTTCTACGAA 957
|||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||
Sbjct 942 TCAGCTGCAAAGGCTTTAGAATATTTCAATACCACTCGTCATATTGTTGTCTTCTACGAA 1001
Query 958 GATCTCATAACAAATCAAACGACATTGAAACAAGTTCAAGAGTTTTTGAACATTCCAGTG 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 GATCTCATAACAAATCAAACGACATTGAAACAAGTTCAAGAGTTTTTGAACATTCCAGTG 1061
Query 1018 AAGGATTTGTCAAGCAGACAGGTGAAAATACACAGAGGAGATTTGTCAGATCATATAAAG 1077
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1062 AAGGATTTGTCAAGCAGACAGGTGAAAATACATAGAGGAGATTTGTCAGATCATATAAAG 1121
Query 1078 AACTGGGAAGATATAAACAAGACATTGAATGGGACCGAGTACGAGAAATTTCTACGAGCA 1137
|| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1122 AATTGGGAAGATATAAACAAGACTTTGAATGGGACTGAGTACGAGAAATTTCTACGAGCT 1181
Query 1138 GATTATTAGTGTTTTTAACTATCTTAGAGACTAAAGGGT-TTGCAAAGTGTCTT-CTTGT 1195
||||||||||||||| ||||||||||| || ||| ||| || | |||| | ||| |
Sbjct 1182 GATTATTAGTGTTTTAAACTATCTTAGTGAAAAAAAGGTCTT-CTAAGTTTGAAGCTT-T 1239
Query 1196 TCTACTTCTTAGGTTCTTCGGCTCAACTACTTGTTGATCTTCTCCTTT--C-TC----AT 1248
||||||||||||||||||||||||||||||||||||||||| |||||| | || ||
Sbjct 1240 TCTACTTCTTAGGTTCTTCGGCTCAACTACTTGTTGATCTTTTCCTTTATCATCTTCTAT 1299
Query 1249 ---------CTTTTTAGAACAGAAATGATTTTGTTTTCTTCTTCTCATTGGTTGTATAGG 1299
|||||||| ||| |||||||||||||||||||| | ||||| ||||||||
Sbjct 1300 TTTTGTTATCTTTTTAGCACATAAATGATTTTGTTTTCTTCT-C--ATTGGATGTATAGG 1356
Query 1300 A--A-CTCGAAAA-TGTATTTGCTTATTTTTAGAGGTTGATTAAGTTGTTTTGTGATTGT 1355
| | || ||||| |||||| ||||||||||||||||| | ||| || ||||||||
Sbjct 1357 AGGAACTGGAAAACTGTATT-GCTTATTTTTAGAGGTT--T---GTT-TT--GTGATTGT 1407
Query 1356 TGATTTGAGTT 1366
|||||||||||
Sbjct 1408 TGATTTGAGTT 1418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67268730300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5