BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485412
Length=1578
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50650.1 | Symbols: | GRAS family transcription factor | ch... 2237 0.0
> AT3G50650.1 | Symbols: | GRAS family transcription factor |
chr3:18806258-18808210 REVERSE LENGTH=1953
Length=1953
Score = 2237 bits (1211), Expect = 0.0
Identities = 1490/1617 (92%), Gaps = 50/1617 (3%)
Strand=Plus/Plus
Query 1 GCCGTCGCTTCCGAAGAGTTTGACTCCGACGAGTGGATGGAGAGTTTGATCAACGGTGGG 60
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 GCCGTCGCTTCCGAGGAGTTTGACTCCGACGAGTGGATGGAGAGTTTGATCAACGGTGGA 407
Query 61 GATTCTTTGCAAACCAATCCAGACTTCCCAATCTACGGCCATGATCCATTCGTCTCGTTC 120
||| | | ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 408 GATGCGTCACAAACCAATCCAGACTTCCCAATCTACGGCCATGATCCATTCGTCTCATTC 467
Query 121 CCGAGTCGACTCAGTGCTCCTTCAAATCTCAACCGAGTCAAC-AAGTATGACTCAGCGAG 179
|||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||
Sbjct 468 CCGAGTCGACTCAGTGCTCCTTCATATCTCAACCGAGTCAACAAAG-ATGACTCAGCGAG 526
Query 180 TCATCAACTCTCTCAGCCACCGA-CCTCCACCACTATATGGACTCCATCTCCGCCATCAC 238
||| |||||| ||| |||||| | | |||||| |||||||| ||||||||||||||||||
Sbjct 527 TCAACAACTCCCTCCGCCACC-AGCTTCCACCGCTATATGGTCTCCATCTCCGCCATCAC 585
Query 239 CACAACA---TCATCCTCCACCTCCGCAGCCGGATTTTGACCTAAACCAACCGATTTTAA 295
||||||| || |||||| || ||||||||||||||||| |||||||| |||||||| |
Sbjct 586 CACAACATCCTCCTCCTCCCCCGCCGCAGCCGGATTTTGATCTAAACCAGCCGATTTTTA 645
Query 296 AAGCTATCCACGAATATGCACGTAAACCGG-------A----A-ACATTAATTCGGATCA 343
||||||||||||| |||||||||||||||| | | ||| ||||||||||||
Sbjct 646 AAGCTATCCACGATTATGCACGTAAACCGGAAACTAAACCGGACACACTAATTCGGATCA 705
Query 344 AAGAATCCGTATCCGAATTC-GGTAACCCGATAGAGCGAGTCGGGTATTACTTCTTAGAA 402
|||||||||| |||||| || || |||||||| | |||||||||||||||||| ||||
Sbjct 706 AAGAATCCGTGTCCGAA-TCAGGCGACCCGATACAACGAGTCGGGTATTACTTCGCAGAA 764
Query 403 GCTCTGTCTCATAGAGAAACAGAGTCTCCGTCGTCATCGTCTTCGTCGTCGTCGCCGCTA 462
||||||||||||| ||||||||||||||||||||||||| |||||||| | || |||
Sbjct 765 GCTCTGTCTCATAAAGAAACAGAGTCTCCGTCGTCATCG---TCGTCGTCAT--CC-CTA 818
Query 463 GAAGACTTCATACTCTCATACAAAACCTTAAACGACGCATGTCCATACTCAAAGTTCGCT 522
||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 819 GAAGATTTCATTCTCTCATACAAAACCTTAAACGACGCATGTCCATATTCAAAGTTCGCT 878
Query 523 CATTTAACAGCGAATCAAGCAATTCTCGAAGCTACGAATCAATCAAACAACATTCACATA 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 CATTTAACAGCGAATCAAGCAATTCTCGAAGCTACGAATCAATCAAACAACATTCACATA 938
Query 583 GTCGATTTCGGGATTTTTCAAGGTATTCAGTGGTCTGCTCTGTTACAAGCTTTAGCGACC 642
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 939 GTCGATTTCGGGATTTTTCAAGGTATTCAATGGTCTGCTCTGTTACAAGCTTTAGCGACC 998
Query 643 CGGTCTTCAGGAAAACCCACCCGGATCCGGATTTCGGGTATTCCCGCTCCGTCTTTAGGA 702
|| ||||| || ||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 999 CGTTCTTCTGGTAAACCCACCCGGATCCGGATTTCGGGTATACCCGCTCCGTCTCTAGGA 1058
Query 703 GACTCACCGGGACCGTCTCTGATCGCTACAGGTAACCGTCTCCGTGATTTCGCGGCGATT 762
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1059 GACTCACCGGGACCGTCTCTGATCGCTACGGGAAACCGTCTCCGTGATTTCGCGGCGATT 1118
Query 763 TTGGATCTCAATTTCGAGTTTTATCCGATTCTGACGCCGATTCAGTTACTAAACGGGTCG 822
||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||
Sbjct 1119 TTGGATCTCAATTTCGAGTTTTATCCGGTTCTGACTCCGATTCAATTACTAAACGGGTCA 1178
Query 823 AGTTTTCGGGTCGACCCGGATGAGGTTTTGGTTGTGAATTTTATGCTTGAGCTTTATAAG 882
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 AGTTTTCGGGTTGACCCGGATGAGGTTTTGGTTGTGAATTTTATGCTTGAGCTTTATAAG 1238
Query 883 CTTCTTGATGAAACGGCGACGACGGTTGGTACGGCGCTCCGGTTAGCTAGATCGTTAAAC 942
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1239 CTTCTAGATGAAACAGCGACGACTGTTGGTACGGCGCTCCGGTTAGCTAGATCGTTAAAC 1298
Query 943 CCGAGGATTGTGACGCTTGGTGAATACGAAGTCAGTTTAAACCGGGTTGGATTTGCAT-A 1001
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||| | |
Sbjct 1299 CCGAGGATTGTGACGCTTGGAGAATACGAAGTCAGTTTAAACCGGGTTGAATTTGC-TAA 1357
Query 1002 CCGGGTTAAGAACTCTCTCCGGTTTTATTCCGCGGTTTTTGAATCGCTTGAACCGAATTT 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 CCGGGTTAAGAACTCTCTCCGGTTTTATTCCGCGGTTTTTGAATCGCTTGAACCGAATTT 1417
Query 1062 GGAGCGAGATTCGAAAGAAAGGCTGAGAGTGGAAAGAGTCTTGTTCGGTAGGAGGA-TAT 1120
||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||
Sbjct 1418 GGATCGAGATTCGAAAGAAAGGCTGAGAGTGGAGAGAGTGTTGTTCGGTAGGAGGATTA- 1476
Query 1121 TGGATTTGGTCCGATCAGATGATGATAATAATAAACCGGGAACCCGGTTTGGGCTAATGG 1180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1477 TGGATTTGGTCCGATCAGATGATGATAATAATAAACCGGGAACCCGGTTTGGGTTAATGG 1536
Query 1181 AGGAGAAAGAACAATGGAGAGTGTTGATGGAGAAAGCCGGTTTTGAACCGGTTAAACCGA 1240
||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 1537 AGGAGAAAGAACAATGGAGAGTGTTGATGGAGAAAGCTGGATTTGAGCCGGTTAAACCGA 1596
Query 1241 GCAATTACGCGGTTAGCCAAGCGAAGCTGCTACTATGGAACTACAATTATAGTACATTGT 1300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1597 GTAATTACGCGGTTAGCCAAGCGAAGCTGCTACTATGGAACTACAATTATAGTACATTGT 1656
Query 1301 ATTCACTTGTTGAATCGGAGCCAGGTTTCATCTCCTTGGCTTGGAACAATGTGCCTCTCC 1360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1657 ATTCACTTGTTGAATCGGAGCCAGGTTTCATCTCCTTGGCTTGGAACAATGTGCCTCTCC 1716
Query 1361 TCACAGTTTCCTCTTGGCGTTGACTACATGGTT-GATAAGTTAATCTAGTCTTT-GAGTT 1418
|||| |||||||||||||||||||||| |||| |||||||||||||||| ||| |||||
Sbjct 1717 TCACCGTTTCCTCTTGGCGTTGACTACTTGGTCCGATAAGTTAATCTAGTATTTTGAGTT 1776
Query 1419 AGCTTTTAGAATTGAATTATTTGGGGATATATTTGGATCTATAATTAGTCTCt----t-t 1473
|||||||||||||||||| ||||||| || |||||||| | |||||||||||| | |
Sbjct 1777 AGCTTTTAGAATTGAATTGTTTGGGGTTAGATTTGGATGTTTAATTAGTCTCTAGCCTAT 1836
Query 1474 t-t-ttA-TCT-----AG-T--T-CTTGGAGTGATAATGGTTTGTCCTTTTTGTTCATTT 1521
| | ||| ||| | | | ||||||||||| |||||||||| ||| |||||||||
Sbjct 1837 TCTCTTACTCTTTTTTATCTAGTGCTTGGAGTGATGATGGTTTGTCGTTTATGTTCATTT 1896
Query 1522 GTAATATATATTGGATGTAACATTTGACTAGATTTATTTGGTGCAAACGAAAGAAGC 1578
||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1897 GTAATATATATTGTATGTAACATTTGACTAGATTTCTTTGGTATAAACGAAAGAAGC 1953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77911245840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5