BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485420
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50740.1 | Symbols: UGT72E1 | UDP-glucosyl transferase 72E1 ... 2364 0.0
> AT3G50740.1 | Symbols: UGT72E1 | UDP-glucosyl transferase 72E1
| chr3:18855161-18856884 REVERSE LENGTH=1724
Length=1724
Score = 2364 bits (1280), Expect = 0.0
Identities = 1505/1615 (93%), Gaps = 9/1615 (1%)
Strand=Plus/Plus
Query 1 acaacaacaac-aacaacaaaaacaaaaa-gacaacaTTCATCT-ATCTAGGCTATGAAG 57
||||||||||| || || ||||| ||||| | |||| |||| | |||||||||||||||
Sbjct 21 ACAACAACAACAAAAAAAAAAAAAAAAAAGGCCAACGTTCA-GTGATCTAGGCTATGAAG 79
Query 58 ATTACAAAACCACATGCCGCCATGTTCGCTAGCCCCGGAATGGGCCACATCATTCCGGTG 117
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 80 ATTACAAAACCACATGTGGCCATGTTCGCTAGCCCCGGAATGGGCCACATCATCCCGGTG 139
Query 118 ATCGAGCTCGGAAAACGCTTAGCTGGATCTCACGGCTTCCACGTCACCATTTTCGTCCTT 177
|||||||||||||||||||||||||| || ||||||||| | ||||||||||||||||||
Sbjct 140 ATCGAGCTCGGAAAACGCTTAGCTGGTTCCCACGGCTTCGATGTCACCATTTTCGTCCTT 199
Query 178 GAAACCGACGCAGCTTCCGCTCAATCTCAGTTCCTAAACTCACCAGGCTGCGACGCGGCC 237
|||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 200 GAAACCGACGCAGCCTCAGCTCAATCTCAATTCCTTAACTCACCAGGCTGCGACGCGGCC 259
Query 238 CTTGTTGATGTTGTTGGCCTCCCAACTCCGGATATCACCGGTTTAGTCGATCCATCAGCC 297
||||||||| | |||||||||||||| || |||||| ||||||||||||| |||||||||
Sbjct 260 CTTGTTGATATCGTTGGCCTCCCAACGCCCGATATCTCCGGTTTAGTCGACCCATCAGCC 319
Query 298 TTTTTTGGGATCAAGCTCTTGGTCATGATGCGTGAGACCATTCCTACCCTTCGATCAAAG 357
|||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||
Sbjct 320 TTTTTTGGGATCAAGCTCTTGGTCATGATGCGTGAGACCATTCCTACCATCCGGTCAAAG 379
Query 358 ATCGCTGAGATGCAACACAAACCAACGGCTTTGATCGTAGACTTGTTTGGTTTGGACGCG 417
|| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 380 ATAGAGGAGATGCAACACAAACCAACGGCTCTGATCGTAGACTTGTTTGGTTTGGACGCG 439
Query 418 ATACCGCTCGGTGGTGAGTTCAACATGTTGACTTATATCTTCATCGCTTCAAACGCACGT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 ATACCGCTCGGTGGTGAGTTCAACATGTTGACTTATATCTTCATCGCTTCAAACGCACGT 499
Query 478 TTTCTCGCGGTGGCTTTGTATTTCCCAACGTTGGACAAAGACATGGAAGAAGAGCACACG 537
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 500 TTTCTCGCGGTGGCTTTGTTTTTCCCAACGTTGGACAAAGACATGGAAGAAGAGCACATA 559
Query 538 ATCAAGAAGAAACCTATGATTATGCCTGGATGTGAACCGGTTCGGTTTGAGGATACACTT 597
||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 560 ATCAAGAAGCAACCTATGGTTATGCCTGGATGTGAACCGGTTCGGTTTGAAGATACACTT 619
Query 598 GAAACATTCCTTGACCCGAACAGCCAGCTGTACCAGGAATTTGTTCCTTTCGGTTCAGTT 657
||||||||||||||||| |||||||| || |||| ||||||||||||||||||||| |||
Sbjct 620 GAAACATTCCTTGACCCAAACAGCCAACTCTACCGGGAATTTGTTCCTTTCGGTTCGGTT 679
Query 658 TTCCCAACG-GCTGATGGTATTATTGTGAATACTTGGGATGATATGGAGCCCAAAACTTT 716
||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 680 TTCCCAACGTG-TGATGGTATTATTGTGAATACATGGGATGATATGGAGCCCAAAACTTT 738
Query 717 GAAATCTCTTCAAGACCCAAAGCTCTTGGGTCGGATTGCTGGTGTACCGGTCTATCCAAT 776
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 739 GAAATCTCTTCAAGACCCAAAGCTCTTGGGTCGAATTGCTGGTGTACCGGTTTATCCAAT 798
Query 777 TGGTCCTTTGTCCAGACCGGTTGATCCATCTAAAACTAATCATCCGGTTTTGGATTGGTT 836
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 TGGTCCTTTGTCTAGACCGGTTGATCCATCTAAAACTAATCATCCGGTTTTGGATTGGTT 858
Query 837 AAACAAACAACCGGACGAGTCGGTACTTTACATTTCATTTGGAAGCGGCGGTTCTCTCTC 896
||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 859 AAACAAACAGCCGGACGAGTCGGTACTTTACATTTCATTTGGAAGCGGTGGCTCTCTCTC 918
Query 897 GGCTAAACAGTTAACCGAATTGGCTTGGGGGCTTGAGATGAGTCAGCAACGGTTCGTTTG 956
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 919 GGCTAAACAACTAACCGAATTGGCTTGGGGACTTGAGATGAGTCAGCAACGGTTCGTTTG 978
Query 957 GGTGGTCCGACCGCCAGTTGACGGTTCAGCTTGCAGTGCATATTTCTCCGCTAACAGTGG 1016
|||||| ||||| || || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 979 GGTGGTTCGACCCCCGGTGGACGGTTCAGCTTGCAGTGCATATTTATCCGCTAACAGTGG 1038
Query 1017 TGAAATACGAGACGGTACACCGGATTATCTACCGGAAGGTTTCGTTAGCCGGACTCATGA 1076
| ||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 1039 TAAAATACGAGACGGTACACCTGATTATCTCCCGGAAGGTTTTGTTAGCCGGACTCATGA 1098
Query 1077 GAGAGGCTTCGTGGTCTCTTCTTGGGCTCCCCAAGCAGAGATCTTGGCCCACCAAGCCGT 1136
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1099 GAGAGGCTTTATGGTCTCTTCTTGGGCTCCCCAAGCGGAGATCTTGGCCCACCAAGCCGT 1158
Query 1137 TGGTGGGTTTCTGACTCACTGCGGTTGGAATTCGATCCTCGAGAGCGTCGTTAGTGGCGT 1196
||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1159 AGGTGGGTTTCTAACTCACTGCGGTTGGAATTCGATTCTCGAGAGCGTCGTTGGTGGCGT 1218
Query 1197 TCCGATGATTGCGTGGCCGCTTTTCGCGGATCAGATGATGAACGCGACTCTCATCAACGA 1256
||||||||| |||||||| ||||| ||||| ||||||||||||||||| ||| |||||||
Sbjct 1219 TCCGATGATCGCGTGGCCACTTTTTGCGGAGCAGATGATGAACGCGACACTCCTCAACGA 1278
Query 1257 AGAGCTTGGCATTGCTGTCCGATCTAAAAAACTTCCGTCCGAGGGAGTGATTTGGAGGGA 1316
|||||||||| |||| ||||| ||||| ||||| ||||| |||||||||||| |||||
Sbjct 1279 AGAGCTTGGCGTTGCCGTCCGCTCTAAGAAACTACCGTCGGAGGGAGTGATTACGAGGGC 1338
Query 1317 AGAGATCGAGGCGTTGGTTAGAAAGATCATGGTGGAGGAGGAAGGTGTTGAGATGAGAAA 1376
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1339 GGAGATCGAGGCGTTGGTGAGAAAGATCATGGTGGAGGAGGAAGGTGCTGAGATGAGAAA 1398
Query 1377 GAAGGTAAAGAAGCTGAAAGACACGGCGGCGGAGTCGCTGAGTTGCGACGGTGGAGTAGC 1436
|||| |||||||||||||||| || || || || ||||||||||||||||||||||| ||
Sbjct 1399 GAAGATAAAGAAGCTGAAAGAGACCGCTGCCGAATCGCTGAGTTGCGACGGTGGAGTGGC 1458
Query 1437 GCACGAATCGTTGTCAAGAATCGCCGACGAGAGCAAGCATCTTTTGGAGCGTGTCAGGTG 1496
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1459 GCATGAATCGTTGTCAAGAATCGCCGACGAGAGCGAGCATCTTTTGGAGCGTGTCAGGTG 1518
Query 1497 CATGGCACGTGGTGCCTAGGAACACTTACCGTTAAAAGTATTTTACTAATAAACTGCGTG 1556
||||||||||||||||||||||| ||||||||| | ||||| ||||| ||||||||||||
Sbjct 1519 CATGGCACGTGGTGCCTAGGAACGCTTACCGTTTATAGTATGTTACTTATAAACTGCGTG 1578
Query 1557 TCGTTTTACCCTTTTCG-TATCTTGTATTATA--GTTTCCGAGTCTTGCTTGCCA 1608
||||||||||||||| | |||||||||||||| |||||||||||||| ||||||
Sbjct 1579 TCGTTTTACCCTTTTGGGTATCTTGTATTATATAGTTTCCGAGTCTTGGTTGCCA 1633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79417262190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5