BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg485422

Length=773
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G38890.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pr...   363    2e-99


> AT5G38890.1 | Symbols:  | Nucleic acid-binding, OB-fold-like 
protein | chr5:15569480-15571144 FORWARD LENGTH=849
Length=849

 Score =  363 bits (196),  Expect = 2e-99
 Identities = 357/429 (83%), Gaps = 33/429 (8%)
 Strand=Plus/Plus

Query  35   GGAAAAGGAGCTTACGTCAACGATACAACAATCTACGCTTCTCTCACAGGAACTCGTCGG  94
            |||||||||||||||||||||||  | || ||||||||||| |||||||||||| | |||
Sbjct  88   GGAAAAGGAGCTTACGTCAACGACGCCACCATCTACGCTTCCCTCACAGGAACTTGCCGG  147

Query  95   ATTGTTTCTCCTCTTCCCGAATCACTTGACCAGAGAGCTATTGTGGAAGTTACGGGTCAC  154
            |||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||
Sbjct  148  ATTGTTTCTCCTCTTCCCGAATCAATTGATCAGAGAGCTATTGTGGAAGTTACAGGTCAC  207

Query  155  AAGGCACATGGTCCAATTCCGGAGACTGGTTCTGTTGTCATAGCAAGAGTGACTAAAGTT  214
            |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  208  AAGGCACATGGTCCTATTCCAGAGACTGGTTCTGTTGTCATAGCAAGAGTGACTAAAGTT  267

Query  215  ATGGCTCGGATGGCTGCTGTTGATATCTTGTGTATTGGTCCAAAGGCCGTTTTTGCTGAC  274
            ||| ||  ||||||||||||||||||||||||| ||||| |||| ||||||  ||   | 
Sbjct  268  ATGACTAAGATGGCTGCTGTTGATATCTTGTGTGTTGGTTCAAAAGCCGTTCGTGAAAA-  326

Query  275  TTAATTAGTTTGT-TCATTTTCATGTGTCGATCTAA-AT-T-AGCG-A-CAGAGATTGAT  328
            ||  || | | || | |||   | | | | | | || || | || | | |||||||||| 
Sbjct  327  TT--TT-GCTGGTGTAATT---A-G-G-CAA-C-AAGATGTTAGAGCAACAGAGATTGAC  375

Query  329  AAGGTTGACATGCATCAGTCATTCAATGCTGGTGACATT-------CT--G-T-CT--CT  375
            || ||||||||||||||||| ||| ||||||||||||||       ||  | | ||  ||
Sbjct  376  AAAGTTGACATGCATCAGTCTTTCCATGCTGGTGACATTGTTAGAGCTATGGTTCTGTCT  435

Query  376  -T-GGTGATGCACAGGCTGACTATTTGTCAACTGTTAAGAATGATCTTGGTGTGGTCTCA  433
             | |||||||||| |||| |||| |||||||||| ||||||||| |||||||||||||||
Sbjct  436  CTTGGTGATGCACGGGCTTACTACTTGTCAACTGCTAAGAATGAACTTGGTGTGGTCTCA  495

Query  434  GCAGAGAGT  442
            || || |||
Sbjct  496  GCTGAAAGT  504



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37575141956


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5