BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485424
Length=596
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50770.1 | Symbols: CML41 | calmodulin-like 41 | chr3:188739... 870 0.0
> AT3G50770.1 | Symbols: CML41 | calmodulin-like 41 | chr3:18873958-18874780
FORWARD LENGTH=823
Length=823
Score = 870 bits (471), Expect = 0.0
Identities = 557/598 (93%), Gaps = 7/598 (1%)
Strand=Plus/Plus
Query 1 ATGGCAACTCTACAAGAGAAACCTTCCTCCAATTCTTTCAAATGGTTTTCCACCAAAACC 60
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 30 ATGGCAACTCAAAAAGAGAAACCTTCCTCCAATTCTTTCAAATGGTTTTCCACCAAAACC 89
Query 61 TTAAAGTTAAACCTTAGTTTCCAAAACCGACGAGGATCACCAAAATCTAATTCCTCGTCA 120
||||||||||||||||||||||||||||||||| ||||||||||||| || || ||||||
Sbjct 90 TTAAAGTTAAACCTTAGTTTCCAAAACCGACGAAGATCACCAAAATCAAACTCTTCGTCA 149
Query 121 ACCTTAAACTCCCCAAGAAGCAACACTGATGacaacaacaacaacacaaAAAGTCACCAC 180
||||||||||| ||||||||||||| ||||| |||||||||||| ||| ||||||||
Sbjct 150 ACCTTAAACTCTCCAAGAAGCAACAGTGATG---ACAACAACAACATAAAGAGTCACCAG 206
Query 181 GCCTCCAATGAAGAGCTCCGTCGAGTCTTCAGCCATTTTGACAGCGACGGTGACGGTAAG 240
|||||||| ||||||||||||| ||||||||||||||| ||||||||||| |||||||||
Sbjct 207 GCCTCCAAAGAAGAGCTCCGTCAAGTCTTCAGCCATTTCGACAGCGACGGCGACGGTAAG 266
Query 241 ATCTCAGCCTTTGAGCTCAGACATTACTTCGGCTCTGTCGGTGAGTATATATCTCACGAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 ATCTCAGCCTTTGAGCTCAGACATTACTTCGGCTCTGTCGGTGAGTATATATCTCACGAG 326
Query 301 GCAGCTCAAGAGGCGATAAACGAAGTTGACACCGACGCAGACGGGTCTTTAGGGTTTGAG 360
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 327 GCAGCTCAAGAGGCGATAAACGAAGTTGACACTGACGCAGACGGGTCTCTAGGGTTTGAG 386
Query 361 GA-TTTCGTTGGACTAATGACAAGAAGAGATCTTGATGGTAACGGTGACGGTGATGGCGG 419
|| ||| |||||| | |||||||||||||||||| | ||| ||||||| | ||||||||
Sbjct 387 GACTTT-GTTGGATTGATGACAAGAAGAGATCTTTACGGTGACGGTGAAGTTGATGGCGA 445
Query 420 CGGAGAGTTGAAGACAGCGTTTGAGATGTTCGAGGTGGAAAAAGGATCAGGTTGCATTAC 479
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 446 TGGAGAGTTGAAGACAGCGTTTGAGATGTTCGAGGTGGAAAAAGGATCAGGCTGCATAAC 505
Query 480 ACCAAAGGGTTTGCAAAAGATGCTTGCAAAGTT-GGGAGAATCAAGAACGCACGGAGAGT 538
|||||||||||||||||||||||||| ||||| ||| |||||||||||| |||||||||
Sbjct 506 ACCAAAGGGTTTGCAAAAGATGCTTGTGAAGTTAGGG-GAATCAAGAACGTACGGAGAGT 564
Query 539 GTGAAGCTATGATAAAGTTTTACGATATTGATGGTAATGGAGTTCTTGATTTTCATGA 596
||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 565 GTGAAGCCATGATAAAGTTTTACGATATAGATGGTAATGGAATTCTTGATTTTCATGA 622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28683697937
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5