BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485427
Length=1385
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50790.1 | Symbols: | esterase/lipase/thioesterase family p... 2037 0.0
> AT3G50790.1 | Symbols: | esterase/lipase/thioesterase family
protein | chr3:18879923-18881982 REVERSE LENGTH=1420
Length=1420
Score = 2037 bits (1103), Expect = 0.0
Identities = 1224/1281 (96%), Gaps = 14/1281 (1%)
Strand=Plus/Plus
Query 1 CAAATTCGTTGTGGTTACCAAAACGACGACGTGGTGAAGCAAATGGCGAGAGTCGCCTTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAAATTCGTTGTGGTTACCAAAACGACGACGTGGTGAAGCAAATGGCGAGAGTCGCCTTT 60
Query 61 GCCACATCATCGCCGCCGTTAATCTCATCAGTTCGTACACTCCGCCGTCATTTCTCAGCT 120
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 61 GCCACATCATCGCCGCCGTTAATCTCATCAGTTCGTACTCTCCGCCGTCATTTCTCAGTT 120
Query 121 TTCGCCGCCGCGAATCCAAAACTCCCAGAAATGTCTCGTCCCTCTCACCACAGCTCTCTC 180
|||||||||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCGCCGCCGCG-------AA-T-CCAGAAATGTCTCGTCCCTCTCACCACAGCTCTCTC 171
Query 181 GAAGTTATCGGCGGAGGAAGCGATCGTTTCTTACCGGCGTTAAAAGACTCACTCGCTAAG 240
|||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||
Sbjct 172 GAAGTTATCGGCGGAGGAAGTGATCGTTTCTTACCGTCGTTAAAGGACTCACTCGCTAAA 231
Query 241 CCGTACAATGCGTTTCCTCTAATCGGATTTAACCGCCACGTGGAGACAATCTACGCAGCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 232 CCGTACAATGCGTTTCCTCTAATCGGATTTAACCGCCACGTGGAGACAATCTACGCATCT 291
Query 301 TTCTACCGTTCTGTTCCTTCCGTTAGACTCCGCCGTGAGTGTCTCCGTACTAAAGACAAC 360
|||| ||||||||||||| |||||||||||||||||| |||||||| ||||||||||||
Sbjct 292 TTCTTTCGTTCTGTTCCTTTCGTTAGACTCCGCCGTGAATGTCTCCGAACTAAAGACAAC 351
Query 361 GGCTCTGTTGCTTTAGATTGGGTCGCCGGTGACGATAATCACCTTCCTCCTGCA-TCTCC 419
|||||||||||||| |||||||||||||| || |||| ||| ||||||||| | || ||
Sbjct 352 GGCTCTGTTGCTTTGGATTGGGTCGCCGGCGAAGATAGGCACTTTCCTCCTG-ATTCACC 410
Query 420 AATCCTCATTTTGTTGCCAGGTTTAACAGGAGGAAGTCAAGATTCGTATGTTAGACATAT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 AATCCTCATTTTGTTGCCAGGTTTAACAGGAGGAAGTCAAGATTCGTATGTTAGACATAT 470
Query 480 GTTGTTAAGAGCTCAAAGTAAAAAATGGCGTTGTGTTGTGTTTAATAGCCGAGGATGTGG 539
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 471 GTTGTTAAGAGCTCAAAGTAAAAAATGGCGTTGTGTTGTGTTTAATAGCCGTGGTTGTGG 530
Query 540 CGATAGTCCTGTGACCACTCCTCAGTTCTACTCGGCTTCGTTTTTAGGAGATATTGGTGA 599
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 531 AGATAGTCCTGTGACCACTCCTCAGTTCTACTCGGCTTCGTTTTTAGGAGACATTGGTGA 590
Query 600 AGTGATTGATCATGTTGGTGAGAAATTCCCAAAAGCTAATTTGTATGCAGCAGGATGGTC 659
||||||||||||||||| ||| |||||||||||||| ||||||||||| || ||||||||
Sbjct 591 AGTGATTGATCATGTTGTTGATAAATTCCCAAAAGCCAATTTGTATGCTGCTGGATGGTC 650
Query 660 TCTTGGAGGCAACATTCTTGTTAACTATTTGGGTCAGGAATCTCATAACTGTCCTCTCTC 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 651 TCTTGGAGGCAACATTCTTGTTAACTATTTGGGTCAGGAATCTCATAACTGTCCTCTCAC 710
Query 720 TGCTGCTGTTTCGTTGTGCAATCCTTTTGATTTGGTTATAGCAGATGAAGATTTCCACAA 779
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 711 TGCTGCTGTTTCTTTGTGCAATCCTTTTGATTTGGTTATAGCAGATGAAGATTTCCATAA 770
Query 780 GGGTTTTAACAATGTTTATGACAAGGCCTTGTCGAAATCTCTTCGTAGAATATTTAGCAA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 GGGTTTTAACAATGTTTATGACAAGGCCTTGTCGAAATCTCTTCGTAGAATATTTAGCAA 830
Query 840 ACATTCTCTTCTTTTTGAAGACATAGGAGGTGAATTTAACATTCCTTTGGCTGCAAATGC 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 ACATTCTCTTCTTTTTGAAGACATAGGAGGTGAATTTAACATTCCTTTGGCTGCAAATGC 890
Query 900 TGAGACGGTTAGGGATTTCGATGATGGCTTAACCCGAGTCTCGTTCGGTTTCAAATCAGT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 TGAGACGGTTAGGGATTTCGATGATGGCTTAACCCGAGTCTCGTTCGGTTTCAAATCAGT 950
Query 960 GGATGAGTACTATTCCAAGTCGAGCAGCTCCAAATATATAAAACATGTCCGTATACCCTT 1019
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 951 AGATGAGTACTATTCCAAGTCGAGCAGCTCCAAAGCTATAAAACATGTCCGCATACCCTT 1010
Query 1020 GCTTTGCATTCAGGCAGCTAATGATCCGATTGCTCCTGATAGAGGTATCCCTCGCGATGA 1079
|||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1011 GCTTTGCATTCAGGCAGCAAATGATCCCATTGCTCCTGAGAGAGGTATCCCTCGCGATGA 1070
Query 1080 CATCAAGGCAAACCCAAACTGCGTGTTGATTGTGACACCAAGAGGAGGGCACTTGGGATG 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 CATCAAGGCAAACCCAAACTGCGTGTTGATTGTGACACCAAGAGGAGGGCACTTGGGATG 1130
Query 1140 GGTGGCAGGTGAAGAAGCTCCGAACGGAGCTCCTTGGACCGACCAAGTGGTTATGGAGTT 1199
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1131 GGTGGCAGGTGAAGAAGCTCCCAACGGAGCTCCTTGGACCGACCAAGTGGTTATGGAGTT 1190
Query 1200 TCTGCAATATGTAGAGAATCGTGAAACCATTAACGGGGAGAGATCTTTTGACGATG-C-- 1256
||||||| |||||||||||||||||||||||||||||||||||||||| || |||| |
Sbjct 1191 TCTGCAACATGTAGAGAATCGTGAAACCATTAACGGGGAGAGATCTTTCGAGGATGTCCA 1250
Query 1257 TCATCAGATTCAAGTCTAATT 1277
| |||||||||||||||||||
Sbjct 1251 TGATCAGATTCAAGTCTAATT 1271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68222540655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5