BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485429
Length=705
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50810.1 | Symbols: | Uncharacterised protein family (UPF04... 647 0.0
AT3G50808.1 | Symbols: | PLATZ transcription factor family pro... 460 6e-129
> AT3G50810.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr3:18888868-18890101 REVERSE LENGTH=736
Length=736
Score = 647 bits (350), Expect = 0.0
Identities = 386/403 (96%), Gaps = 4/403 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAATGTGCCGGGATCTTTCGGCACTAGCGCCAGCTTCGCTCTCCGTTTCGGCCAA 60
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 138 ATGGAGCATGTGCCGGGATCGTTCGGCACTAGCGCCAGCTTCGCTCTCCGTTTCGGCCAA 197
Query 61 ACCATTTTCTCAGCTGCTTCGTTGATCTTCATGTGTTTTGATTACGATTTCTATGATTTC 120
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 198 ACCATTTTCTCAGCTGCTTCGTTGATCTTCATGTGCTTTGATTTCGATTTCTATGATTTC 257
Query 121 ACTACCTTCTGCTATTTAGCGACTG-TGATGGCAATTGTAACTCCATGGAGCATTTTACT 179
||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 258 ACTACTTTCTGCTATTTAGCGA-TGGTGATGGCAATTGTAACTCCATGGAGCATTTTACT 316
Query 180 TGCCTTGACAGACACATACTCTGTCTTGGTGAAACTCCTTCCTCAAGAATTAAGAGTTCT 239
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 317 TGCCTTGACAGACACATACTCTGTCTTAGTGAAACTCCTTCCTCAAGAATTAAGAGTTCT 376
Query 240 TTCCATCGTTTTCGCCGGTGATTTCGTACTTTCATTTCTTTCT-TTGGGTGGGGCTTGTG 298
||||||||||||||||||||||||||||||||| ||||||||| |||| ||| |||||||
Sbjct 377 TTCCATCGTTTTCGCCGGTGATTTCGTACTTTCGTTTCTTTCTCTTGG-TGGTGCTTGTG 435
Query 299 CTGTAGCTAGTGCAACCGAATTGCTTGCGTCTGCCGATGGAAAAATCTGTGATGGTAACC 358
|||||||||||||||| ||| ||||||||||||| |||||||| ||||||||||||| ||
Sbjct 436 CTGTAGCTAGTGCAACTGAACTGCTTGCGTCTGCTGATGGAAAGATCTGTGATGGTAGCC 495
Query 359 TCTGTATCCAATACCAAGTCTCGGCTGCATTGGCTTTCTTGTG 401
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 TCTGTATCCAATACCAAGTCTCGGCTGCATTGGCTTTCTTGTG 538
> AT3G50808.1 | Symbols: | PLATZ transcription factor family protein
| chr3:18887614-18888047 REVERSE LENGTH=333
Length=333
Score = 460 bits (249), Expect = 6e-129
Identities = 289/308 (94%), Gaps = 3/308 (1%)
Strand=Plus/Plus
Query 401 GGATACATATATATTCGATCAACGGGTTTCCGATTGTTTATATAAACCAGAGACGTGGCA 460
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 26 GGATACATCTATATTCGATCAACGGGTTTCCGATTGTTTACATAAACCAGAGACGTGGCA 85
Query 461 ATGATAATCATCGTTTTAGAAACAATGTTATGCATAAATGTCAAGTTTGTGAATGGGAAC 520
|| |||||||||||| ||||| ||||||||||||||||||| || ||||||||||||||
Sbjct 86 ATAATAATCATCGTTCTAGAAGCAATGTTATGCATAAATGTAAAATTTGTGAATGGGAAA 145
Query 521 TTGATGCTGCTTCTTCTGCTTTGTTCTGTTCAATGGAATGCAAGTTTAGGAGCGTTCTTG 580
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 146 TTGACGCTGCTTCTTCTGCTTTGTTCTGTTCTATGGAATGCAAGTTTAGGAGCGTTCTTG 205
Query 581 GGTCACAACTTGATGAGCTGATGGAGAATTCAG-AGA--TTACAGAGAATTCAGAAGAGA 637
||||||||||||||||||||||||| |||||| ||| ||||||||| |||||||||||
Sbjct 206 GGTCACAACTTGATGAGCTGATGGAAAATTCATCAGAGGTTACAGAGATTTCAGAAGAGA 265
Query 638 CTGATGAACTGGTGAAGAAGAAACGACATAGGAGAAAAGGGAGTCCACATAGAGCTCCAT 697
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 TTGATGAACCGGTGATGAAGAAACGACATAGGAGAAAAGGGAGTCCACATAGAGCTCCAT 325
Query 698 TCTTCTAG 705
||||||||
Sbjct 326 TCTTCTAG 333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34159219960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5