BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485429 Length=705 Score E Sequences producing significant alignments: (Bits) Value AT3G50810.1 | Symbols: | Uncharacterised protein family (UPF04... 647 0.0 AT3G50808.1 | Symbols: | PLATZ transcription factor family pro... 460 6e-129 > AT3G50810.1 | Symbols: | Uncharacterised protein family (UPF0497) | chr3:18888868-18890101 REVERSE LENGTH=736 Length=736 Score = 647 bits (350), Expect = 0.0 Identities = 386/403 (96%), Gaps = 4/403 (1%) Strand=Plus/Plus Query 1 ATGGAGAATGTGCCGGGATCTTTCGGCACTAGCGCCAGCTTCGCTCTCCGTTTCGGCCAA 60 |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 138 ATGGAGCATGTGCCGGGATCGTTCGGCACTAGCGCCAGCTTCGCTCTCCGTTTCGGCCAA 197 Query 61 ACCATTTTCTCAGCTGCTTCGTTGATCTTCATGTGTTTTGATTACGATTTCTATGATTTC 120 ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct 198 ACCATTTTCTCAGCTGCTTCGTTGATCTTCATGTGCTTTGATTTCGATTTCTATGATTTC 257 Query 121 ACTACCTTCTGCTATTTAGCGACTG-TGATGGCAATTGTAACTCCATGGAGCATTTTACT 179 ||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 258 ACTACTTTCTGCTATTTAGCGA-TGGTGATGGCAATTGTAACTCCATGGAGCATTTTACT 316 Query 180 TGCCTTGACAGACACATACTCTGTCTTGGTGAAACTCCTTCCTCAAGAATTAAGAGTTCT 239 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 317 TGCCTTGACAGACACATACTCTGTCTTAGTGAAACTCCTTCCTCAAGAATTAAGAGTTCT 376 Query 240 TTCCATCGTTTTCGCCGGTGATTTCGTACTTTCATTTCTTTCT-TTGGGTGGGGCTTGTG 298 ||||||||||||||||||||||||||||||||| ||||||||| |||| ||| ||||||| Sbjct 377 TTCCATCGTTTTCGCCGGTGATTTCGTACTTTCGTTTCTTTCTCTTGG-TGGTGCTTGTG 435 Query 299 CTGTAGCTAGTGCAACCGAATTGCTTGCGTCTGCCGATGGAAAAATCTGTGATGGTAACC 358 |||||||||||||||| ||| ||||||||||||| |||||||| ||||||||||||| || Sbjct 436 CTGTAGCTAGTGCAACTGAACTGCTTGCGTCTGCTGATGGAAAGATCTGTGATGGTAGCC 495 Query 359 TCTGTATCCAATACCAAGTCTCGGCTGCATTGGCTTTCTTGTG 401 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 496 TCTGTATCCAATACCAAGTCTCGGCTGCATTGGCTTTCTTGTG 538 > AT3G50808.1 | Symbols: | PLATZ transcription factor family protein | chr3:18887614-18888047 REVERSE LENGTH=333 Length=333 Score = 460 bits (249), Expect = 6e-129 Identities = 289/308 (94%), Gaps = 3/308 (1%) Strand=Plus/Plus Query 401 GGATACATATATATTCGATCAACGGGTTTCCGATTGTTTATATAAACCAGAGACGTGGCA 460 |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 26 GGATACATCTATATTCGATCAACGGGTTTCCGATTGTTTACATAAACCAGAGACGTGGCA 85 Query 461 ATGATAATCATCGTTTTAGAAACAATGTTATGCATAAATGTCAAGTTTGTGAATGGGAAC 520 || |||||||||||| ||||| ||||||||||||||||||| || |||||||||||||| Sbjct 86 ATAATAATCATCGTTCTAGAAGCAATGTTATGCATAAATGTAAAATTTGTGAATGGGAAA 145 Query 521 TTGATGCTGCTTCTTCTGCTTTGTTCTGTTCAATGGAATGCAAGTTTAGGAGCGTTCTTG 580 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 146 TTGACGCTGCTTCTTCTGCTTTGTTCTGTTCTATGGAATGCAAGTTTAGGAGCGTTCTTG 205 Query 581 GGTCACAACTTGATGAGCTGATGGAGAATTCAG-AGA--TTACAGAGAATTCAGAAGAGA 637 ||||||||||||||||||||||||| |||||| ||| ||||||||| ||||||||||| Sbjct 206 GGTCACAACTTGATGAGCTGATGGAAAATTCATCAGAGGTTACAGAGATTTCAGAAGAGA 265 Query 638 CTGATGAACTGGTGAAGAAGAAACGACATAGGAGAAAAGGGAGTCCACATAGAGCTCCAT 697 |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 266 TTGATGAACCGGTGATGAAGAAACGACATAGGAGAAAAGGGAGTCCACATAGAGCTCCAT 325 Query 698 TCTTCTAG 705 |||||||| Sbjct 326 TCTTCTAG 333 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34159219960 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5