BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485431
Length=917
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50830.1 | Symbols: COR413-PM2, ATCOR413-PM2 | cold-regulate... 1314 0.0
> AT3G50830.1 | Symbols: COR413-PM2, ATCOR413-PM2 | cold-regulated
413-plasma membrane 2 | chr3:18893845-18895497 REVERSE LENGTH=1018
Length=1018
Score = 1314 bits (711), Expect = 0.0
Identities = 856/925 (93%), Gaps = 14/925 (2%)
Strand=Plus/Plus
Query 1 TCTAGATTCTGGATACAGCTGGAAGAGAATTATAAGAAAAA-CAAAA-TCTTCGAAC--- 55
||| |||||||||||||||||||||||||||| |||||||| |||| |||| |||
Sbjct 39 TCTGGATTCTGGATACAGCTGGAAGAGAATTAAAAGAAAAAGAAAAACACTTCCAACGAA 98
Query 56 GAAGATCGATTTGCTTCGAGTCTCT--AAGAA-AAGAAGAAATTATGGGGCGTGTGGATT 112
||||||||||||||||||||||||| ||||| ||||| |||| ||||||||| ||||||
Sbjct 99 GAAGATCGATTTGCTTCGAGTCTCTGAAAGAAGAAGAAAAAATAATGGGGCGTATGGATT 158
Query 113 ATCTAGCGATGAAGACGGACGACGTCGATACGGTGGCGGCGTTAGTCAATTCCGACATGG 172
|||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||
Sbjct 159 ATCTAGCGATGAAGACCGACGACGTCGATACGGT---GGCGTTAGTCAATTCCGATATGG 215
Query 173 AAGAGCTCAAGGTCGCTGCGAAGAAACTATTTAGCGATGTTTCGAAGCTTGGTGGATTAG 232
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 216 AAGAGCTCAAGGTCGCTGCGAAGAAACTGTTTAGCGATGTTTCGAAGCTTGGTGGATTAG 275
Query 233 GTTTCGGTGTTTCTTTTCTCAAATTCATCGCTTCTTTCGCTGCCATCTACTTGTTAATAT 292
| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
Sbjct 276 GCTTCGGTGTTTCTTTTCTCAAATTCCTCGCTTCTTTCGCTGCCATTTACTTGTTAATTT 335
Query 293 TGGATCGTACAAATTGGAAAACCAAGATGCTTACATCACTTTTAATACCATACATCTTCC 352
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 336 TGGATCGTACCAATTGGAAAACCAAGATGCTTACATCACTCCTAATACCATACATCTTCC 395
Query 353 TTAGCCTTCCTAGTGTCATTTTTAACTTTCTCAGTGGAGAAGTTGGGAAATGGATTGCTT 412
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 396 TTAGCCTTCCTAGTGTCATTTTCAACTTTCTCAGTGGAGATGTTGGGAAATGGATTGCTT 455
Query 413 TCGTCGCAGTTGTACTCCGACTTTTCTTCCCTAAGCATTTCCCAGATTGGCTTGAGATGC 472
|||| || ||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 TCGTTGCGGTTGTTCTCAGACTTTTCTTCCCTAAGCATTTCCCAGATTGGCTTGAGATGC 515
Query 473 CGGGTTCTCTAATCCTTCTGCTGGTAGTTGCTCCACACTTCCTAGCTCACCATATACGTG 532
| |||||||| ||||| || ||||||||| ||||||||||||| ||||||||||||||||
Sbjct 516 CAGGTTCTCTGATCCTGCTACTGGTAGTTTCTCCACACTTCCTTGCTCACCATATACGTG 575
Query 533 GAACCTGGATTGGCACTGTAATCAGCCTTTTCATTGGCTGTTACCTTCTTCAAGAACATA 592
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 576 GAACCTGGATAGGCACTGTAATCAGCCTTTTCATTGGATGTTACCTTCTTCAAGAACATA 635
Query 593 TCCGAGCATCGGGTGGGTTCAGGAATTCATTCACACAGCCCCGTGGAGTGTCAAACACTT 652
| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 636 TTCGAGCATCGGGTGGATTCAGGAACTCATTCACACAGCCCCGTGGAGTATCAAACACTT 695
Query 653 TAGGGATCATCCTTCTTTTGGTCTACCCTGTTTGGGCTCTAATCGTCCGTGTCATATAAT 712
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 696 TAGGGATCATTCTTCTTTTGGTCTACCCTGTCTGGGCTCTAATCGTCCGTGTCATGTAAT 755
Query 713 CCACATTCCTATTCCATTCTCCAAGTTGTTTCTTGCTCGGCTGCTTCAATAAACTGCGTG 772
|||||||||| || ||| | |||||||||||||||||||||||| ||||||||||||||
Sbjct 756 CCACATTCCTCTTTCAT-CGACAAGTTGTTTCTTGCTCGGCTGCTCCAATAAACTGCGTG 814
Query 773 AAACATCGAGAGCAGAGCAAGAATCTGTGGTGTTCCTTTCTTCTGATTATGTTGCATACC 832
|||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 815 AAACATCGAG--CAGAGCAAGTCTCTATGGTGTTCCTTTCTTCTGATTATGTTGCATACC 872
Query 833 CAAATACTGCCTCAAGCTCAATGAATGTTCTATATATAAAAGAATCTCATTTTTCAAATA 892
|||||||| ||||||||||||| |||||||||| ||||||| ||||||||||||||| ||
Sbjct 873 CAAATACTACCTCAAGCTCAATCAATGTTCTATGTATAAAAAAATCTCATTTTTCAACTA 932
Query 893 TGTGTTTGTCCTACTGTATGAAAAA 917
| ||||||||||||| || ||||||
Sbjct 933 TTTGTTTGTCCTACTATAAGAAAAA 957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44808859124
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5