BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485432
Length=1947
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50840.1 | Symbols: | Phototropic-responsive NPH3 family pr... 2684 0.0
> AT3G50840.1 | Symbols: | Phototropic-responsive NPH3 family
protein | chr3:18896175-18898621 REVERSE LENGTH=2135
Length=2135
Score = 2684 bits (1453), Expect = 0.0
Identities = 1827/1998 (91%), Gaps = 63/1998 (3%)
Strand=Plus/Plus
Query 1 AAATGAGTGCGACTTTGCCTCTTTTCAATGCCCAATTTCTTGAGATTCTGGCTATTCTGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 AAATGAGTGCGACTTTGCCTCTTTTCAATGCCCAATTTCTTGAGATTCTGGCTGTTCTGC 60
Query 61 A--CAAATATTAAACAATCAATTCCTTTTATAAAAAGCAAAAGACAGAAATATTTATTAT 118
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCCAAATATTAAACAATCAATTCCTTTTATAAAAAGCAAAAGACAGAAATATTTATTAT 120
Query 119 TAAGCTAAAGAATTGATCAAAAAACTCGATTCACTTTTCTCAAAAACCCGAATATAA-C- 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 TAAGCTAAAGAATTGATCAAAAAACTCGATTCACTTTTCTCAAAAACCCGAATATAATCT 180
Query 177 CATTCCCAATTGCTTCCACTTCCATCGAGAGattttgctttcatttttctttgattt-tc 235
|||||||||| ||||||||||||||||||||||||| ||||| ||| | ||| ||| |
Sbjct 181 CATTCCCAATAGCTTCCACTTCCATCGAGAGATTTT-CTTTC-TTTGT-TTT--TTTCTG 235
Query 236 t-attttcCTCCAATGGCTAACTCCAAGAAGCAAGCATGGtttttttATACCACAGGCTT 294
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 TGATTTTC-TCCAATGGCTAACTCCAAGAAGCAAGCATGGTTTTTTTATACCACAGGCTT 294
Query 295 ACCAAGTGACATCGAAATCGAAGTTGATGATATAACATTTCATCTCCATAAGTTTCCTCT 354
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 295 ACCAAGTGACATAGAAATCGAAGTTGATGATATAACATTTCATCTTCATAAGTTTCCTCT 354
Query 355 GATGTCAAAAAGCAGAAAACTTCACCAACTAATAACAGAGCAAGAACAGAGTAAAGTTTA 414
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 AATGTCAAAAAGCAAAAAACTTCACCAACTAATAACAGAGCAAGAACAGAGTAAAGTTTA 414
Query 415 TCCTCACATCAAGCTCGAGAATTTTCCGGGAGGTTCAGAGATTTTCGAGATGGTGATAAA 474
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 415 TTCTCACATCAAGCTCGAGAATTTTCCAGGAGGTTCAGAGATTTTCGAGATGGTGATAAA 474
Query 475 GATAAGCTACGGTTTCAAAGTCGACATCTCTGTTTCCACAGCTGTTCCACTACGTTGCGC 534
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 475 GATAAGCTACGGTTTCAAAGTCGACATCTCTGTTTCCACAGCTGTTCCACTCCGTTGCGC 534
Query 535 CGCCGAGTATCTCGAAATGACAGAAGATTACTCACCGGAGAATCTCATTTCAAAAACAGA 594
|||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 535 CGCCGAGTATCTAGAAATGACGGAAGAGTACTCACCGGAGAATCTCATTTCAAAAACAGA 594
Query 595 GAGGTTTCTTTCACAGTTTGTCTTCACTAACGTACGAGAATCCATTAAAGCGTTAAAAGC 654
|| |||||||||| |||| |||||||||||||||| ||||||||| |||||||| |||||
Sbjct 595 GAAGTTTCTTTCAGAGTTCGTCTTCACTAACGTACAAGAATCCATCAAAGCGTTGAAAGC 654
Query 655 TTGCGAATCAGTCTCGTCTTTAGCTGAATCTCTCGGTGTAACGGAACAGTGTATAGACTC 714
||| |||||||||||||||||||||||||| ||| || ||||||||||||||||||||||
Sbjct 655 TTGTGAATCAGTCTCGTCTTTAGCTGAATCACTCTGTATAACGGAACAGTGTATAGACTC 714
Query 715 CATCGTCT-CCAAAGCTTCCTTAACCGATCCGTCGTCGTTTTACGGTTGGCCAATGAACA 773
|||||||| |||| ||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 715 CATCGTCTTCCAA-GCTTCCTCAACCGATCCGTCGTCGTTTTACGGTTGGCCAATAAACA 773
Query 774 ATGGAGGTATCTTCGCCGTCGATCGGAAGAAACAGAGCAAAGATTCGAAAACAGAGCTTT 833
| |||||||| ||| |||| || |||||||||||||||||||||||||||||||||||||
Sbjct 774 ACGGAGGTATATTCACCGTTGACCGGAAGAAACAGAGCAAAGATTCGAAAACAGAGCTTT 833
Query 834 GGTTTGAAGATTTAACGGATTTGAGTTTTCCGATCTTCAGACGTGTGATCTTAACCATGA 893
|||| |||||| ||||||| ||||||||||| ||||||||||||||||||||| ||||||
Sbjct 834 GGTTCGAAGATCTAACGGAGTTGAGTTTTCCAATCTTCAGACGTGTGATCTTATCCATGA 893
Query 894 AATCGAGAGATC-TAAATCCTGAGATTGTAGAGAGATCTCTAATTTCTTACGCGAAGAAA 952
| ||||| | || | | ||||||||||||||||||||||||| || ||||||||||||||
Sbjct 894 AGTCGAGTG-TCCTGAGTCCTGAGATTGTAGAGAGATCTCTACTTACTTACGCGAAGAAA 952
Query 953 CACGTTCCTGGAAT-TACGCGTTCATCGTCACCATCTTCATCTTCTTC--CA-CT---A- 1004
||| |||| ||||| | |||||||||||||| |||||||||||||||| | || |
Sbjct 953 CACATTCCAGGAATCT-CGCGTTCATCGTCAGCATCTTCATCTTCTTCTTCTTCTTCCAC 1011
Query 1005 -----TAGCTTCCGAGAATCAACAAAGAGAATTACTAGAGACAATAACCTCAGATCTTCC 1059
||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||
Sbjct 1012 CACCATAGCTTCCGAGAATCAACAAAGAGAATTATTAGAGACGATAACTTCAGATCTTCC 1071
Query 1060 CAT-AACCGAAACAACAACGAGATCTCTCTTCGGTTTGTTACGATCAGCGATCATCCTCA 1118
|| ||| | || || ||||||||||||||||||||||||||| | |||||||| ||||
Sbjct 1072 -ATTAACTGCGACGACTACGAGATCTCTCTTCGGTTTGTTACGAGCCGCGATCATTCTCA 1130
Query 1119 ACACCTCAGAGAATTGCAGGAAGTTTCTGGAGAAGAAAATTGGTTCGAATCTTGAGAAAG 1178
|| |||| |||||||||||||||||||| ||||| ||||| || ||||||||||||||||
Sbjct 1131 ACGCCTCCGAGAATTGCAGGAAGTTTCTAGAGAAAAAAATCGGATCGAATCTTGAGAAAG 1190
Query 1179 CTACGCTTGATGATCTTCTAATTCCAAGTTACTCGTATCTCAACGAAACGTTATACGATA 1238
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 CTACGCTTGATGATCTTCTCATTCCAAGTTACTCGTATCTCAACGAAACGTTATACGATA 1250
Query 1239 TTGATTTGGTGGAGAGACTCTTACGCCGTTTTCTTGAAAACGCCGCCGTGTCGTCTTCGT 1298
||||||||||||||||||||||||| |||||||| ||||||| |||||||||||| ||||
Sbjct 1251 TTGATTTGGTGGAGAGACTCTTACGTCGTTTTCTCGAAAACGTCGCCGTGTCGTCGTCGT 1310
Query 1299 CATTGACGGTGGTTGGGAGACTT-ATCGACGGAGTTCTTGGTGAAATTGCATTGGACGCT 1357
|||||||||||||||||||| || |||||||||||||| ||||||||||||| |||||||
Sbjct 1311 CATTGACGGTGGTTGGGAGA-TTGATCGACGGAGTTCTCGGTGAAATTGCATCGGACGCT 1369
Query 1358 AATCTTAAACCGGAAAAGTTTTATTATCTGGCGGTTTTGCTTCCGGCTCAAGCACGGGTT 1417
||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1370 AATCTTAAACCGGAACAGTTTTATAATCTGGCGGTTTTGCTTCCGGTTCAAGCACGGGTT 1429
Query 1418 TACGATGATGGACTTTACAGAGCCGTCGATATATATTTCAAGACGCATCCATGGATATCG 1477
|||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||| |
Sbjct 1430 TACGATGATGGACTATACAGAGCCGTCGATATATATTTCAAGACTCATTCATGGATATTG 1489
Query 1478 GAGGCAGACAAGGAGAAGATATGTAGTGTAATGGATTGCCGAAAACTAACTGTTGAAGGA 1537
|||| ||| ||||||||||| ||||| || |||||||| ||||||| ||||||||||||
Sbjct 1490 GAGGAAGAGAAGGAGAAGATTTGTAGCGTGATGGATTGTAGAAAACTGACTGTTGAAGGA 1549
Query 1538 TGCATACACGCGGCACAAAACGAGCGTTTACCACTACGAGCCGTCGTACAAGTTCTGTTT 1597
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 TGCACACACGCGGCACAAAACGAGCGTTTACCACTACGAGCCGTCGTACAAGTTCTGTTT 1609
Query 1598 TTGGAGCAATTACAGCTCCGGCAAGTAATCACCGGGACTTTAGTGACGGAGGAAGACGGT 1657
|||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1610 TTGGAGCAGCTACAGCTCCGGCAAGTAATCACTGGGACTTTACTGACGGAGGAAGACGGT 1669
Query 1658 GATGAAACCGTGGTGGACTTTGGG-AGATGGAAGAAAACGGTGAAGGAGAATCAGGTGCT 1716
||| |||| ||||||||||| ||| ||||||||| || ||||||||||||||||||||||
Sbjct 1670 GATAAAACGGTGGTGGACTT-GGGTAGATGGAAGGAAGCGGTGAAGGAGAATCAGGTGCT 1728
Query 1717 TCGTTTGGATTTGGATACGATGAGGACACGAGTGAACCAGCTAGAGAAAGAATGCTTGTA 1776
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1729 TCGTTTGGATATGGATACGATGAGGACACGAGTGAACCAGCTAGAGAAAGAATGCTTGTA 1788
Query 1777 CTTGAAGAAAGTGATCGTTAAGATCGACAAAGAAAGTTTGT-G--GTC-AA---T----C 1825
||||||||||||||||| |||||||||||||||||||||| | | | || | |
Sbjct 1789 CTTGAAGAAAGTGATCGCGAAGATCGACAAAGAAAGTTTGTTGAAGGCGAAGCATGGGGC 1848
Query 1826 GG-----T----AA--G--AAG---TTCGGATGTAAATTTACGACTCAGGTTTGTGATTC 1869
|| | || | ||| |||||||| |||||| || |||| |||||||||||
Sbjct 1849 GGGGAAATGGTCAATCGGGAAGAAGTTCGGATGCAAATTTTCGGCTCAAGTTTGTGATTC 1908
Query 1870 GCACGAGGCAACGATGGTCGATGGAAGATCACGACGTTTTCTTAGCTAGTACACAAATCA 1929
|| |||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||
Sbjct 1909 ACAGGAGGCAACGATGGTCGATAGAAGATCACGACGTTTTCTTAGTTAGTACATAAATCA 1968
Query 1930 AAATCATCTTGTGCTTCT 1947
|||||||||||||||||
Sbjct 1969 GAATCATCTTGTGCTTCT 1986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96435246945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5