BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485432 Length=1947 Score E Sequences producing significant alignments: (Bits) Value AT3G50840.1 | Symbols: | Phototropic-responsive NPH3 family pr... 2684 0.0 > AT3G50840.1 | Symbols: | Phototropic-responsive NPH3 family protein | chr3:18896175-18898621 REVERSE LENGTH=2135 Length=2135 Score = 2684 bits (1453), Expect = 0.0 Identities = 1827/1998 (91%), Gaps = 63/1998 (3%) Strand=Plus/Plus Query 1 AAATGAGTGCGACTTTGCCTCTTTTCAATGCCCAATTTCTTGAGATTCTGGCTATTCTGC 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1 AAATGAGTGCGACTTTGCCTCTTTTCAATGCCCAATTTCTTGAGATTCTGGCTGTTCTGC 60 Query 61 A--CAAATATTAAACAATCAATTCCTTTTATAAAAAGCAAAAGACAGAAATATTTATTAT 118 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATCCAAATATTAAACAATCAATTCCTTTTATAAAAAGCAAAAGACAGAAATATTTATTAT 120 Query 119 TAAGCTAAAGAATTGATCAAAAAACTCGATTCACTTTTCTCAAAAACCCGAATATAA-C- 176 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 121 TAAGCTAAAGAATTGATCAAAAAACTCGATTCACTTTTCTCAAAAACCCGAATATAATCT 180 Query 177 CATTCCCAATTGCTTCCACTTCCATCGAGAGattttgctttcatttttctttgattt-tc 235 |||||||||| ||||||||||||||||||||||||| ||||| ||| | ||| ||| | Sbjct 181 CATTCCCAATAGCTTCCACTTCCATCGAGAGATTTT-CTTTC-TTTGT-TTT--TTTCTG 235 Query 236 t-attttcCTCCAATGGCTAACTCCAAGAAGCAAGCATGGtttttttATACCACAGGCTT 294 | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 236 TGATTTTC-TCCAATGGCTAACTCCAAGAAGCAAGCATGGTTTTTTTATACCACAGGCTT 294 Query 295 ACCAAGTGACATCGAAATCGAAGTTGATGATATAACATTTCATCTCCATAAGTTTCCTCT 354 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 295 ACCAAGTGACATAGAAATCGAAGTTGATGATATAACATTTCATCTTCATAAGTTTCCTCT 354 Query 355 GATGTCAAAAAGCAGAAAACTTCACCAACTAATAACAGAGCAAGAACAGAGTAAAGTTTA 414 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 355 AATGTCAAAAAGCAAAAAACTTCACCAACTAATAACAGAGCAAGAACAGAGTAAAGTTTA 414 Query 415 TCCTCACATCAAGCTCGAGAATTTTCCGGGAGGTTCAGAGATTTTCGAGATGGTGATAAA 474 | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 415 TTCTCACATCAAGCTCGAGAATTTTCCAGGAGGTTCAGAGATTTTCGAGATGGTGATAAA 474 Query 475 GATAAGCTACGGTTTCAAAGTCGACATCTCTGTTTCCACAGCTGTTCCACTACGTTGCGC 534 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 475 GATAAGCTACGGTTTCAAAGTCGACATCTCTGTTTCCACAGCTGTTCCACTCCGTTGCGC 534 Query 535 CGCCGAGTATCTCGAAATGACAGAAGATTACTCACCGGAGAATCTCATTTCAAAAACAGA 594 |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 535 CGCCGAGTATCTAGAAATGACGGAAGAGTACTCACCGGAGAATCTCATTTCAAAAACAGA 594 Query 595 GAGGTTTCTTTCACAGTTTGTCTTCACTAACGTACGAGAATCCATTAAAGCGTTAAAAGC 654 || |||||||||| |||| |||||||||||||||| ||||||||| |||||||| ||||| Sbjct 595 GAAGTTTCTTTCAGAGTTCGTCTTCACTAACGTACAAGAATCCATCAAAGCGTTGAAAGC 654 Query 655 TTGCGAATCAGTCTCGTCTTTAGCTGAATCTCTCGGTGTAACGGAACAGTGTATAGACTC 714 ||| |||||||||||||||||||||||||| ||| || |||||||||||||||||||||| Sbjct 655 TTGTGAATCAGTCTCGTCTTTAGCTGAATCACTCTGTATAACGGAACAGTGTATAGACTC 714 Query 715 CATCGTCT-CCAAAGCTTCCTTAACCGATCCGTCGTCGTTTTACGGTTGGCCAATGAACA 773 |||||||| |||| ||||||| ||||||||||||||||||||||||||||||||| |||| Sbjct 715 CATCGTCTTCCAA-GCTTCCTCAACCGATCCGTCGTCGTTTTACGGTTGGCCAATAAACA 773 Query 774 ATGGAGGTATCTTCGCCGTCGATCGGAAGAAACAGAGCAAAGATTCGAAAACAGAGCTTT 833 | |||||||| ||| |||| || ||||||||||||||||||||||||||||||||||||| Sbjct 774 ACGGAGGTATATTCACCGTTGACCGGAAGAAACAGAGCAAAGATTCGAAAACAGAGCTTT 833 Query 834 GGTTTGAAGATTTAACGGATTTGAGTTTTCCGATCTTCAGACGTGTGATCTTAACCATGA 893 |||| |||||| ||||||| ||||||||||| ||||||||||||||||||||| |||||| Sbjct 834 GGTTCGAAGATCTAACGGAGTTGAGTTTTCCAATCTTCAGACGTGTGATCTTATCCATGA 893 Query 894 AATCGAGAGATC-TAAATCCTGAGATTGTAGAGAGATCTCTAATTTCTTACGCGAAGAAA 952 | ||||| | || | | ||||||||||||||||||||||||| || |||||||||||||| Sbjct 894 AGTCGAGTG-TCCTGAGTCCTGAGATTGTAGAGAGATCTCTACTTACTTACGCGAAGAAA 952 Query 953 CACGTTCCTGGAAT-TACGCGTTCATCGTCACCATCTTCATCTTCTTC--CA-CT---A- 1004 ||| |||| ||||| | |||||||||||||| |||||||||||||||| | || | Sbjct 953 CACATTCCAGGAATCT-CGCGTTCATCGTCAGCATCTTCATCTTCTTCTTCTTCTTCCAC 1011 Query 1005 -----TAGCTTCCGAGAATCAACAAAGAGAATTACTAGAGACAATAACCTCAGATCTTCC 1059 ||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| Sbjct 1012 CACCATAGCTTCCGAGAATCAACAAAGAGAATTATTAGAGACGATAACTTCAGATCTTCC 1071 Query 1060 CAT-AACCGAAACAACAACGAGATCTCTCTTCGGTTTGTTACGATCAGCGATCATCCTCA 1118 || ||| | || || ||||||||||||||||||||||||||| | |||||||| |||| Sbjct 1072 -ATTAACTGCGACGACTACGAGATCTCTCTTCGGTTTGTTACGAGCCGCGATCATTCTCA 1130 Query 1119 ACACCTCAGAGAATTGCAGGAAGTTTCTGGAGAAGAAAATTGGTTCGAATCTTGAGAAAG 1178 || |||| |||||||||||||||||||| ||||| ||||| || |||||||||||||||| Sbjct 1131 ACGCCTCCGAGAATTGCAGGAAGTTTCTAGAGAAAAAAATCGGATCGAATCTTGAGAAAG 1190 Query 1179 CTACGCTTGATGATCTTCTAATTCCAAGTTACTCGTATCTCAACGAAACGTTATACGATA 1238 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1191 CTACGCTTGATGATCTTCTCATTCCAAGTTACTCGTATCTCAACGAAACGTTATACGATA 1250 Query 1239 TTGATTTGGTGGAGAGACTCTTACGCCGTTTTCTTGAAAACGCCGCCGTGTCGTCTTCGT 1298 ||||||||||||||||||||||||| |||||||| ||||||| |||||||||||| |||| Sbjct 1251 TTGATTTGGTGGAGAGACTCTTACGTCGTTTTCTCGAAAACGTCGCCGTGTCGTCGTCGT 1310 Query 1299 CATTGACGGTGGTTGGGAGACTT-ATCGACGGAGTTCTTGGTGAAATTGCATTGGACGCT 1357 |||||||||||||||||||| || |||||||||||||| ||||||||||||| ||||||| Sbjct 1311 CATTGACGGTGGTTGGGAGA-TTGATCGACGGAGTTCTCGGTGAAATTGCATCGGACGCT 1369 Query 1358 AATCTTAAACCGGAAAAGTTTTATTATCTGGCGGTTTTGCTTCCGGCTCAAGCACGGGTT 1417 ||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1370 AATCTTAAACCGGAACAGTTTTATAATCTGGCGGTTTTGCTTCCGGTTCAAGCACGGGTT 1429 Query 1418 TACGATGATGGACTTTACAGAGCCGTCGATATATATTTCAAGACGCATCCATGGATATCG 1477 |||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||| | Sbjct 1430 TACGATGATGGACTATACAGAGCCGTCGATATATATTTCAAGACTCATTCATGGATATTG 1489 Query 1478 GAGGCAGACAAGGAGAAGATATGTAGTGTAATGGATTGCCGAAAACTAACTGTTGAAGGA 1537 |||| ||| ||||||||||| ||||| || |||||||| ||||||| |||||||||||| Sbjct 1490 GAGGAAGAGAAGGAGAAGATTTGTAGCGTGATGGATTGTAGAAAACTGACTGTTGAAGGA 1549 Query 1538 TGCATACACGCGGCACAAAACGAGCGTTTACCACTACGAGCCGTCGTACAAGTTCTGTTT 1597 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1550 TGCACACACGCGGCACAAAACGAGCGTTTACCACTACGAGCCGTCGTACAAGTTCTGTTT 1609 Query 1598 TTGGAGCAATTACAGCTCCGGCAAGTAATCACCGGGACTTTAGTGACGGAGGAAGACGGT 1657 |||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||| Sbjct 1610 TTGGAGCAGCTACAGCTCCGGCAAGTAATCACTGGGACTTTACTGACGGAGGAAGACGGT 1669 Query 1658 GATGAAACCGTGGTGGACTTTGGG-AGATGGAAGAAAACGGTGAAGGAGAATCAGGTGCT 1716 ||| |||| ||||||||||| ||| ||||||||| || |||||||||||||||||||||| Sbjct 1670 GATAAAACGGTGGTGGACTT-GGGTAGATGGAAGGAAGCGGTGAAGGAGAATCAGGTGCT 1728 Query 1717 TCGTTTGGATTTGGATACGATGAGGACACGAGTGAACCAGCTAGAGAAAGAATGCTTGTA 1776 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1729 TCGTTTGGATATGGATACGATGAGGACACGAGTGAACCAGCTAGAGAAAGAATGCTTGTA 1788 Query 1777 CTTGAAGAAAGTGATCGTTAAGATCGACAAAGAAAGTTTGT-G--GTC-AA---T----C 1825 ||||||||||||||||| |||||||||||||||||||||| | | | || | | Sbjct 1789 CTTGAAGAAAGTGATCGCGAAGATCGACAAAGAAAGTTTGTTGAAGGCGAAGCATGGGGC 1848 Query 1826 GG-----T----AA--G--AAG---TTCGGATGTAAATTTACGACTCAGGTTTGTGATTC 1869 || | || | ||| |||||||| |||||| || |||| ||||||||||| Sbjct 1849 GGGGAAATGGTCAATCGGGAAGAAGTTCGGATGCAAATTTTCGGCTCAAGTTTGTGATTC 1908 Query 1870 GCACGAGGCAACGATGGTCGATGGAAGATCACGACGTTTTCTTAGCTAGTACACAAATCA 1929 || |||||||||||||||||| |||||||||||||||||||||| ||||||| |||||| Sbjct 1909 ACAGGAGGCAACGATGGTCGATAGAAGATCACGACGTTTTCTTAGTTAGTACATAAATCA 1968 Query 1930 AAATCATCTTGTGCTTCT 1947 ||||||||||||||||| Sbjct 1969 GAATCATCTTGTGCTTCT 1986 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 96435246945 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5