BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485437
Length=775
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50850.1 | Symbols: | Putative methyltransferase family pro... 1098 0.0
AT3G50860.1 | Symbols: | Clathrin adaptor complex small chain ... 202 4e-51
> AT3G50850.1 | Symbols: | Putative methyltransferase family protein
| chr3:18901342-18902152 REVERSE LENGTH=811
Length=811
Score = 1098 bits (594), Expect = 0.0
Identities = 723/784 (92%), Gaps = 14/784 (2%)
Strand=Plus/Plus
Query 1 AATCAATGGCTTTCCGAGAAGACGACGACGATGTTAACATCGGAGAAAACGAAG-AGCCC 59
||||||||||| ||||||||||||||||||||||||||||||||| ||| ||| || |
Sbjct 4 AATCAATGGCTCTCCGAGAAGACGACGACGATGTTAACATCGGAG-AAA--AAGTAGTCG 60
Query 60 A-GT-GAATCGGAGCTTCAGATGTACCGGATCAATTCGATCGAATCAACGGTTGTGATTC 117
| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACGTAGAATCGGAGCTTCAGAAGTACCGGATCAATTCGATCGAATCAACGGTTGTGATTC 120
Query 118 GTCAATTACCGTCACAAGGTATCGCCTTCAAGCTTTGGTTACCTGCAACAACCCTCGTCA 177
|||| |||||| ||||||| || ||||||||||| ||| ||||||||||||| |||||||
Sbjct 121 GTCAGTTACCGACACAAGGCATTGCCTTCAAGCTCTGGATACCTGCAACAACTCTCGTCA 180
Query 178 CGCTTCTCGATAACTACCGTCGTGACCCAAACACTAGCCCACTCACTCGCACCTTCTCGA 237
||||| | ||||||||||||||||||||||||| ||| || |||| ||||||||||||||
Sbjct 181 CGCTTTTAGATAACTACCGTCGTGACCCAAACATTAGTCCTCTCAATCGCACCTTCTCGA 240
Query 238 GTTTTCAATCCGCCGGTTCAGATTCTTCTTCTCCGATAAACATCGTCGAGCTCGGATCTG 297
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 GTTTTCAATCCGACGGTTCAGATTCTTCTTCTCCGATTAACATCGTCGAGCTCGGATCTG 300
Query 298 GAACTGGAATCGTAGGAATCGCGGCGGCTGCGACGTTAGGTGCTAATGTCACGGTGACGG 357
|||| |||||||| || ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 301 GAACGGGAATCGTCGGTATCGCAGCGGCTGCGACACTAGGTGCTAATGTCACGGTGACGG 360
Query 358 ATCTCCCAAACGTAATCGAGAATCTCAAATTCAACGTCGACGCGAACGCTGAAGTCGTGG 417
|||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||
Sbjct 361 ATCTCCCAAACGTAATCGAGAATCTCAAATTCAACGCCGACGCAAACGCTCAAGTCGTGG 420
Query 418 CT-AGATTCGGTGGGAAAGTCCATGTGGCGTCTCTTCGTTGGGGTGAAATCAATGACGTG 476
|| || ||||||||||||||||| |||||||||||||||||||| |||||| ||||||||
Sbjct 421 CTAAG-TTCGGTGGGAAAGTCCACGTGGCGTCTCTTCGTTGGGGCGAAATCGATGACGTG 479
Query 477 G-AGGTTTTGGGTCAAAACGTTGACTTGATTTTAGCGTCTGACGTGGTTTACCACGAGCG 535
| | | ||||||||||||||||||||||||| ||||||||||||||||||| |||| |
Sbjct 480 GAAAG-TTTGGGTCAAAACGTTGACTTGATTCTAGCGTCTGACGTGGTTTATCACGTTCA 538
Query 536 TCTTTATGATCCTCTCCTTAAAACGCTGCGTTTTTTGCTCTTAGAAGG---GTCCAAGAG 592
||||||||| |||||||| ||||||||||||||| ||||||||||||| ||| ||||
Sbjct 539 TCTTTATGAACCTCTCCTCAAAACGCTGCGTTTTCTGCTCTTAGAAGGATCATCCGAGAG 598
Query 593 AGTGTTTCTTATGGCTCACCTCAAGAGATGGAAGAAAGAATCAAtttttttCAAGAAAGC 652
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 599 AGTGTTTCTTATGGCTCACCTCAAGAGATGGAAGAAAGAATCGATTTTTTTCAAGAAAGC 658
Query 653 TCGGAGATTCTTCGATGTTGATGTTATACATTGTGATGATCCTCAAGAAGGTTCTAGAAT 712
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 659 TCGGAGATTCTTCGATGTTGATGTTATACATTGTGATGATCCTCAAGAAGGTGCTAGAAT 718
Query 713 TGGAGTTGTAGTTTACCGTTTTGCACCGAAAAATCAAA-CCTTTAAGAAGATGATGTCAA 771
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 719 CGGAGTTGTAGTTTACCGTTTTGCACCGAAAAATCAAAACCTTTAAGAAGATTTTGTCAA 778
Query 772 ATGT 775
||||
Sbjct 779 ATGT 782
> AT3G50860.1 | Symbols: | Clathrin adaptor complex small chain
family protein | chr3:18901997-18904197 FORWARD LENGTH=1088
Length=1088
Score = 202 bits (109), Expect = 4e-51
Identities = 140/154 (91%), Gaps = 6/154 (4%)
Strand=Plus/Minus
Query 1 AATCAATGGCTTTCCGAGAAGACGACGACGATGTTAACATCGGAGAAAACGAAG-AGCCC 59
||||||||||| ||||||||||||||||||||||||||||||||| ||| ||| || |
Sbjct 153 AATCAATGGCTCTCCGAGAAGACGACGACGATGTTAACATCGGAG-AAA--AAGTAGTCG 97
Query 60 A-GT-GAATCGGAGCTTCAGATGTACCGGATCAATTCGATCGAATCAACGGTTGTGATTC 117
| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 96 ACGTAGAATCGGAGCTTCAGAAGTACCGGATCAATTCGATCGAATCAACGGTTGTGATTC 37
Query 118 GTCAATTACCGTCACAAGGTATCGCCTTCAAGCT 151
|||| |||||| ||||||| || |||||||||||
Sbjct 36 GTCAGTTACCGACACAAGGCATTGCCTTCAAGCT 3
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37675610250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5