BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485438
Length=946
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50860.1 | Symbols: | Clathrin adaptor complex small chain ... 1208 0.0
> AT3G50860.1 | Symbols: | Clathrin adaptor complex small chain
family protein | chr3:18901997-18904197 FORWARD LENGTH=1088
Length=1088
Score = 1208 bits (654), Expect = 0.0
Identities = 810/885 (92%), Gaps = 11/885 (1%)
Strand=Plus/Plus
Query 1 GTTAACATCGTCGTCGTCTTCTCGGAAAGCCATTGATT-TGACCAATCCTCTCGACGGCG 59
|||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||
Sbjct 116 GTTAACATCGTCGTCGTCTTCTCGGAGAGCCATTGATTGTGACCAATCCTCACGACGGCC 175
Query 60 TCGCTAATATTTTAGTAGGTCACTCAAATTTGATTACACGTGGAGGTTTCTTATTGGTAA 119
||||| || |||| |||| |||||||||||| ||||||||||||| || |||||||| |
Sbjct 176 CCGCTACTA-TTTATTAGGGCACTCAAATTTGGTTACACGTGGAGGGTTGTTATTGGTGA 234
Query 120 TGACGTCACCAAATGTAAATTGAAGAA-CCTCTCAGTTAGACAGAGGGTTACAAGATCG- 177
|||||||| ||||||| |||||||||| ||||| || |||| |||||||| || || |
Sbjct 235 TGACGTCATCAAATGT-AATTGAAGAAGCCTCTAAGATAGAGAGAGGGTTTGAAAAT-GT 292
Query 178 GAGTTTGAGAGTTCGTCAGCGAGAGAAACGGAGAAAG--AGAGAGTTGA--AGAAAGATG 233
||| || |||||| |||||||||||| ||| |||||| |||||| || | ||||||
Sbjct 293 GAGATTCAGAGTTTGTCAGCGAGAGAGACGAAGAAAGAAAGAGAGGAGAGGTGGAAGATG 352
Query 234 ATAAAGGCAGTGATGATGTTGAATACACAAGGCAAACCACGGCTAGCTAAATTCTACGAT 293
|| ||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||
Sbjct 353 ATTAAGGCAGTGATGATGATGAACACACAAGGCAAACCACGTCTAGCTAAATTCTACGAT 412
Query 294 TACATGCCTGTAGAGAAGCAGCAGGAGCTAATCCGCGGCGTGTTTTCAGTATTGTGCAGT 353
||| ||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 413 TACTTGCCTGTGGAGAAGCAGCAGGAGCTTATTCGCGGCGTGTTTTCAGTATTGTGCAGT 472
Query 354 AGACCTGAGAACGTAAGCAATTTTCTGGAGATCGATTCATTGTTTGGCCCGTTCTCTCGG 413
||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||| |||
Sbjct 473 AGACCTGAGAACGTAAGCAATTTTCTGGAGATCGAATCATTGTTTGGACCGGACTCGCGG 532
Query 414 CTTGTATACAAGCACTATGCTACACTCTATTTTGTGCTAGTATTTGATGGTTCAGAAAAT 473
|||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 533 CTTGTATACAAGCATTATGCTACACTCTATTTTGTTCTTGTATTTGATGGTTCAGAAAAT 592
Query 474 GAGCTTGCTATGCTTGATCTCATTCAAGTTCTTGTTGAAACACTTGACAAATGCTTCAGC 533
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 593 GAGCTTGCTATGCTTGATCTCATTCAAGTTCTTGTTGAAACACTGGACAAATGCTTCAGC 652
Query 534 AATGTCTGCGAACTCGACATTGTGTTCAATTACAGCAAGATGCACGCGGTGGTAGACGAG 593
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||
Sbjct 653 AATGTCTGCGAACTCGACATTGTGTTCAACTACAGCAAGATGCACGCGGTGTTAGATGAG 712
Query 594 ATTGTATTTGGAGGACAGGTATTGGAAACTAGTTCCGCCGAAGTCATCAAGGCTGTTGAA 653
||||||||||||||||| ||| ||||||||||||| || |||||||| ||||||||||||
Sbjct 713 ATTGTATTTGGAGGACAAGTACTGGAAACTAGTTCTGCTGAAGTCATGAAGGCTGTTGAA 772
Query 654 GAAATATCAAAATTAGCAGCTGCCTCAAATTCGATTTCACTCGTCCCCAAGTCTGTTTCC 713
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 773 GAAATATCAAAATTAGAAGCTGCCTCAAATTCGATTTCACTTGTCCCCAAGTCTGTTTCC 832
Query 714 GGGTGGCGTGGCCGTTAGCTTGGAAAAAACTTGCCTGAACAAGTCAACAAAACATGTAAC 773
||||||||||||||||||||| ||||||||||||||||| |||||| | ||||||||||
Sbjct 833 GGGTGGCGTGGCCGTTAGCTTCGAAAAAACTTGCCTGAATAAGTCAG-AGAACATGTAAC 891
Query 774 AAAAGTTTATCCAAGTCTTGATCCAAACATGTTTGTTTAGTGAGCGTGAAATGTTGCGTG 833
||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 892 AAAAGCTTATCCAAGTCTTGATCCAAACATGTTTGTTTAATGAGCGTGGAATGTTGCGTG 951
Query 834 GATGGGCTCAGTGGTCTAACATGGGCCTGAGAATTGTAATTGGGT 878
|||||||||||| ||||||| |||||||| |||||||||||||||
Sbjct 952 GATGGGCTCAGTAGTCTAACGTGGGCCTGTGAATTGTAATTGGGT 996
Score = 106 bits (57), Expect = 4e-22
Identities = 66/70 (94%), Gaps = 2/70 (3%)
Strand=Plus/Plus
Query 878 TTTGAGAATGTAACAAAAACGACGAGAAGTTAAGATCTATAAACG-TGAAATGATGTCCA 936
||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct 1020 TTTGAGAATGTAACAAAAACGACGAGAAGTTAAGATCTATAAATGAT-AAATGATGTCCA 1078
Query 937 AAATCAGATT 946
|| |||||||
Sbjct 1079 AATTCAGATT 1088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46265649387
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5