BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485440
Length=847
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50880.1 | Symbols: | DNA glycosylase superfamily protein |... 1173 0.0
> AT3G50880.1 | Symbols: | DNA glycosylase superfamily protein
| chr3:18913486-18914960 FORWARD LENGTH=1096
Length=1096
Score = 1173 bits (635), Expect = 0.0
Identities = 779/848 (92%), Gaps = 12/848 (1%)
Strand=Plus/Plus
Query 1 AACTCCGCCGTCGTCATGTCTCTCCGTAAAACCCTAACCGCCGTGAATCAA-CATTCGAT 59
||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||| |
Sbjct 9 AACTCGGCCGTCGTCATGTCTCTCCGTAAAACCCTAACCGCCGTGAATCAATC-TTCGTT 67
Query 60 GTCGCCGGGTTCTTCAATTGT-CGCCGTTAAACTGGCGGATTCAGAGGCCTCTGGTTCTT 118
|||||| ||||| || | | ||||| ||| || | | |||||||| ||||||||| |
Sbjct 68 ACCGCCGGATTCTTTAA-TCTCCGCCGGTAATCTCACTGTTTCAGAGGTCTCTGGTTCAT 126
Query 119 CTTCTAGAATCACG-TTTCGACCTCGTAAAATCCGGAAAGTTTCGTCAGATCCGTCGCCG 177
|||||||||||| | ||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 127 CTTCTAGAATCA-GATTTCGTCCTCGTAAAATCAGGAAAGTTTCGTCAGATCCGTCGCCG 185
Query 178 AGAATCATCATCACCGCGTCTCCTCCTTTATCAACCAAATCGAC-GATTGATCTCGCTCT 236
|| ||||| |||||||||||||||||| ||||||| |||||||| | ||||| |||||||
Sbjct 186 AGGATCATTATCACCGCGTCTCCTCCTCTATCAACAAAATCGACTG-TTGATATCGCTCT 244
Query 237 CCGTCACTTACAAAGCTCCGACGAACTCCTCGGAGAC-TTAATCACATCGCACAACGATC 295
|||||||||||||||||||| ||||| ||||||| | ||||||||| ||||||||||||
Sbjct 245 ACGTCACTTACAAAGCTCCGATGAACTTCTCGGAG-CATTAATCACAACGCACAACGATC 303
Query 296 CTCCAGTGTTCGAATCAAGCAATCCTCCGTTTCTCTCCCTAGCGAGATCAATCCTCTACC 355
||||| ||||||| ||||| ||| |||||||||||||| |||||||||||||||| ||||
Sbjct 304 CTCCACTGTTCGACTCAAGTAATACTCCGTTTCTCTCCTTAGCGAGATCAATCCTATACC 363
Query 356 AACAACTCGCGACAAAAGCAGCGAAATGTATCTACGATCGATTCATCTCTTTATTCAACG 415
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 364 AACAACTCGCGACGAAAGCAGCGAAATGTATCTACGATCGATTCATCTCTCTATTCAACG 423
Query 416 GCGGAGAATCAGGTGTTGTTCCTGAATCTGTGATCTCTCTCTCCGCCGTTGATCTTCGTA 475
| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 424 GTGGAGAAGCAGGTGTTGTTCCTGAATCTGTGATCTCACTCTCCGCCGTTGATCTTCGTA 483
Query 476 AGATAGGTGTCTCCGGGAGAAAAGCGAGTTACCTTCACGATTTAGCTGAGAAGTACAACA 535
|||| |||||||||||||||||||| |||||||| |||||| ||||||| || |||||||
Sbjct 484 AGATCGGTGTCTCCGGGAGAAAAGCTAGTTACCTCCACGATCTAGCTGATAAATACAACA 543
Query 536 ACGGTGTCCTCTCCGATGAATTGATTATGAAAATGAGTGATGAAGAGTTGATTGAGAGAT 595
||||||| || || |||||||||||| |||||||||||||||||||||||||||| || |
Sbjct 544 ACGGTGTGCTTTCTGATGAATTGATTCTGAAAATGAGTGATGAAGAGTTGATTGATAGGT 603
Query 596 TAACATTGGTTAAAGGAATTGGAGTGTGGACTGTTCATATGTTCATGATCTTCTCTTTGC 655
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 604 TAACTTTGGTTAAAGGAATTGGAGTGTGGACTGTTCATATGTTTATGATCTTCTCGTTGC 663
Query 656 ATAGACCTGATGTTTTGCCTGTGGGAGAT-TTAGGTGTGAGGAAAGGTGTGAAAGATCTT 714
||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 664 ATAGACCTGATGTGTTGCCTGTGGGAGATCTT-GGTGTGAGGAAAGGTGTGAAAGATCTT 722
Query 715 TATGGTTTGAAAGATCTTCCAGGTCCATTGCAAATGGAGCAGCTTTGTGAGAAATGGCGT 774
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 TATGGTTTGAAAAATCTTCCAGGTCCATTGCAAATGGAGCAGCTTTGTGAGAAATGGCGT 782
Query 775 CCTTATAGGTCCGTTGGTTCATGGTACATGTGGAGACTAATCGAGGCTCGTAAGATCAAA 834
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 783 CCTTATAGGTCTGTTGGTTCATGGTACATGTGGAGACTAATCGAGTCTCGTAAGACCAAA 842
Query 835 TAGCACCT 842
||||||||
Sbjct 843 TAGCACCT 850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41292468834
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5