BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485441
Length=982
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50890.1 | Symbols: AtHB28, HB28, ZHD7 | homeobox protein 28... 1319 0.0
> AT3G50890.1 | Symbols: AtHB28, HB28, ZHD7 | homeobox protein
28 | chr3:18916166-18917328 FORWARD LENGTH=1056
Length=1056
Score = 1319 bits (714), Expect = 0.0
Identities = 849/910 (93%), Gaps = 26/910 (3%)
Strand=Plus/Plus
Query 1 GATGGGTGATAGGAAACAAACACACATACGTCATCATCACCCTTAATTTCTATTTCTCCT 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 GATGGGTGATAGGAAACAAACACACATACGTCATCATCATCCTTAATTTCTATTTCTCCT 60
Query 61 TC--CTTCTTCATCAATATCAATCTCATCTTCCACTACT-CTTCCCTATAACAAT-A--A 114
|| |||| |||||||||||||||||||||||||||||| || |||| ||||||| | |
Sbjct 61 TCTTCTTCATCATCAATATCAATCTCATCTTCCACTACTCCTCCCCTCTAACAATAAGCA 120
Query 115 GCATCTCTATAATCCGTAAGATTCACAATGGAGCTTGGAGGAAAATGTAATGCAATTACT 174
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 GCATCTCTATAATCCCTAAGATTCACAATGGAGCTTGGAGGAAAATGCAATGCAATTACA 180
Query 175 TCTC-CAACAATGATCTCAACAGAAGTAAAGCCACATACGGATCCGG-A--AGAAGCCAA 230
| | |||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 181 AC-CACAACAATGATCTCAACAGAAGTAAAGCCACATACGGATCCGGAACCAGAAGCCAA 239
Query 231 ACCGGAATCAGATCCATCCATGGCTTTATTCCCGATCAAGAAAGAAAAACAAAAACCGAA 290
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 240 ACCCGAATCAGATCCATCCATGGCTTTATTCCCGATCAAGAAAGAAAACCAAAAACCAAA 299
Query 291 GACACGTGTCGACCAAGCAGCTAAGTACCGGGAATGCCAGAAGAACCACGCGGCCTCTAC 350
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||
Sbjct 300 GACACGTGTCGACCAAGGAGCTAAGTACCGGGAATGTCAGAAGAACCACGCGGCCTCAAC 359
Query 351 CGGAGGACACGTGGTGGACGGATGCTGCGAGTTCATGGCCGGCGGAGAAGAAGGAACGCT 410
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 360 CGGAGGACACGTGGTGGACGGATGCTGCGAGTTCATGGCCGGCGGAGAAGAAGGTACACT 419
Query 411 CGAAGCTGTAAAATGCGCCGCCTGTAACTGTCACCGGAGTTTCCACCGGAAAGAAATGTA 470
|| ||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 420 CGGTGCTTTAAAATGCGCCGCCTGTAACTGTCACCGGAGCTTCCACCGGAAAGAAGTGTA 479
Query 471 CGGACACATGAGCAGTAAACAAGATCA---GCTGATAATAACTCCGGCGTTTTACAGCAG 527
|||||||| || ||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 480 CGGACACAGGAACAGTAAACAAGATCATCAGCTGATGATAACTCCGGCGTTTTACAGCAG 539
Query 528 TAACAGCTCGTACAAGGCGATGCAGACACGTGGAATGCATCCAACGGGTGAGATTGGACG 587
|||||||||||||||| | || | ||| |||||||||||||||||||||||||||
Sbjct 540 TAACAGCTCGTACAAG-C----CA--C--GTGTAATGCATCCAACGGGTGAGATTGGACG 590
Query 588 GAGGACATCTTCGTCAAGCGAGGATATGAAGAAGATTCTGAGTCATCGTAACCAGAACAT 647
|||||| || || ||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 591 GAGGACTTCATCTTCAAGCGAGGATATGAAGAAGATTCTGAGTCATCGTAACCAAAACGT 650
Query 648 TGATGGGAAAGGTTtgatgatgatgatgatgaggaagaagaagagagtgaggacaaagat 707
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TGATGGGAAAAGTTTGATGATGATGATGATGAGGAAGAAGAAGAGAGTGAGGACAAAGAT 710
Query 708 caatgaagaacaaaaagagaagatgaaggaaTTTGCAGAGAGGTTAGGGTGGAGGATGCA 767
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 711 CAATGAAGAACAAAAGGAGAAGATGAAGGAATTTGCAGAGAGATTAGGGTGGAGGATGCA 770
Query 768 GAAGAAAGATGAAGAAGAGATTGATAAGTTTTGTAGGATGGTGAATCTAAGGAGACAGGT 827
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 771 GAAGAAAGATGAAGAAGAGATTGATAAGTTTTGTAGGATGGTGAATCTGAGGAGACAAGT 830
Query 828 TTTTAAGGTTTGGATGCATAATAACAAGCAAGCAATGAAGAGAAACA---GTAACATTAG 884
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 831 TTTTAAGGTTTGGATGCATAATAACAAGCAAGCAATGAAGAGAAACAATAGTAACATTAG 890
Query 885 TGAATAGTTT 894
||||||||||
Sbjct 891 TGAATAGTTT 900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48074078679
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5