BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485445
Length=899
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50920.1 | Symbols: | Phosphatidic acid phosphatase (PAP2) ... 1363 0.0
> AT3G50920.1 | Symbols: | Phosphatidic acid phosphatase (PAP2)
family protein | chr3:18922387-18923596 REVERSE LENGTH=919
Length=919
Score = 1363 bits (738), Expect = 0.0
Identities = 849/903 (94%), Gaps = 5/903 (1%)
Strand=Plus/Plus
Query 1 TTAGCGATGGATTTAATACTACGTTGACTTTTATCTTCCTTTTGGAAATGGCAGCGTCGT 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 17 TTAGCGATGGATTTGATACTACGTTGACTTTTATCTTCCTTTTGGAAATGGCAGCGTCGT 76
Query 61 C--GTCTTC-TCTTCTTCTTCACTATCCCACCTGCAATTTCTACTTTGGCTCTTCCTCAT 117
| ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| |
Sbjct 77 CTTCTCTTCTTCTTCTTCTTCACTGTCCCACCTGCAATTTCTACTTTGACTCTTCCTCGT 136
Query 118 ACCTTAAAAGATCGAGACTTTCGAGCTATAGTTCGATTATCTCTCGTGGGTCTCCTTTGT 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 ACCTTAAAAGATCGAGACTTTCGAGCTATAGTTCGATTATCTCTCGTGGGTCTCCTTTGT 196
Query 178 TTGTCACTGGCTTTGGATCTATGACCGTTAAAAGATTCTCTAGGAGAGACGGAGGTAGCA 237
||||| || |||||||||||||||||||||||||||||||||| |||| |||| | || |
Sbjct 197 TTGTCTCTAGCTTTGGATCTATGACCGTTAAAAGATTCTCTAGCAGAGTCGGAAGCAGGA 256
Query 238 GCAATGACGGTAACGAACAATTTGGAGC-TGCGGAGAAAGAATCTTTCATCAATAACTCG 296
|||||||||||||||||||||||||||| | |||| |||||||||||||||| |||||
Sbjct 257 GCAATGACGGTAACGAACAATTTGGAGCGTT-GGAGCAAGAATCTTTCATCAACAACTCA 315
Query 297 TCGGAAATCCGGAAAGACTTGGTCGCCGGCGGTGGGATTGAAGCTATTGTTAATCGTCTG 356
||||| || ||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 316 TCGGAGATACGGAAAGACTTGGTCACCGGCGGTGGGATTGAAGCCATTGTTAATCGTCTG 375
Query 357 AGCAAATGGGTTGTGTCTGCTCTGTTTGGTTCAATCATTCTTCTAAGACATGATGGTGCA 416
||||||||||||||||||| ||| |||||||||||||||||| | ||||||||||||||
Sbjct 376 AGCAAATGGGTTGTGTCTGTTCTATTTGGTTCAATCATTCTTTTGCGACATGATGGTGCA 435
Query 417 GCCTTGTGGGCAGTCATTGGATCGATTTCGAATTCCGCTCTCTCTGTAGTTCTGAAACGT 476
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 436 GCCTTGTGGGCAGTCATTGGATCGATTTCGAATTCTGCTCTCTCTGTAGTTCTTAAACGT 495
Query 477 ATACTTAACCAAGAAAGGCCTGCTACAACATTGCGATCCGATCCCGGGATGCCATCTTCT 536
|||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 496 ATACTTAACCAAGAGAGGCCTACTACAACATTGCGATCTGATCCCGGGATGCCATCTTCT 555
Query 537 CACGCTCAATCTATTTCTTTCATATCTGTATTTGCTGTTTTATCCGTTATGGAATGGCTT 596
|| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 556 CATGCTCAATCCATTTCTTTCATATCTGTCTTTGCTGTTTTATCCGTTATGGAATGGCTT 615
Query 597 GGAACCAACGGAGTGTCTTTGTTTCTTAGCGGCTTAATCCTCGCATTGGGTTCCTACTTT 656
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 616 GGAACCAACGGTGTGTCTTTGTTTCTTAGCGGCTTAATCCTCGCATTGGGTTCATACTTT 675
Query 657 ATACGGTTAAGGGTTTCTCAGAAACTACACACAAGCAGTCAAGTGGTGGTGGGTGCCATT 716
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 676 ATACGGTTAAGGGTTTCTCAAAAACTGCACACAAGCAGTCAAGTGGTGGTGGGTGCCATT 735
Query 717 GTTGGTTCTGTTTTCTGCATCTTGTGGTACACAATGTGGAACTCACTTCTTCGTGAAGCC 776
||||||||| ||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 736 GTTGGTTCTCTTTTCTGCATCTTATGGTACACAATGTGGAATTCGCTTCTTCGTGAAGCC 795
Query 777 TTTGAGTCATCTCTATTAGTCCAAATATCTGTATTTCTGTTTGCAGCTACATTTGCGCTA 836
|| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 796 TTCGAGGCATCTCTATTAGTGCAAATATCTGTATTTCTGTTTGCAGCTACATTTGCGCTA 855
Query 837 GCTTTCGTAGCGTACGTTGTACTTAACTGGTTCAAAGATGACAGATAAGCAAAACAAAGC 896
||||||| |||||||||||||||||||||||||||||| || |||||||||| || ||||
Sbjct 856 GCTTTCGCAGCGTACGTTGTACTTAACTGGTTCAAAGACGAGAGATAAGCAATACCAAGC 915
Query 897 TTT 899
|||
Sbjct 916 TTT 918
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43904644478
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5