BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485448
Length=2848
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50950.2 | Symbols: ZAR1 | HOPZ-ACTIVATED RESISTANCE 1 | chr... 4163 0.0
AT3G50960.1 | Symbols: PLP3a | phosducin-like protein 3 homolog... 180 8e-44
> AT3G50950.2 | Symbols: ZAR1 | HOPZ-ACTIVATED RESISTANCE 1 | chr3:18935714-18938685
FORWARD LENGTH=2750
Length=2750
Score = 4163 bits (2254), Expect = 0.0
Identities = 2600/2761 (94%), Gaps = 48/2761 (2%)
Strand=Plus/Plus
Query 1 AGTAACCAAGAAACCGAGTAAGGTTGACTCTTGACTTATAATTGTTAAACCATTGACTTC 60
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 10 AGTAACCAAGAAAACGAGTAAGGTTGACTCTTGAC------TTGTTAAACCATTGACTTC 63
Query 61 -A-TT---T--A-TCT-T-T-TAAGCTCA-TTCT-TGAAACAAG-TTTGCTAAAACGATC 106
| || | | ||| | | |||||||| || | ||||||||| |||||||||| |||
Sbjct 64 AATTTCGATAAAGTCTCTATGTAAGCTCATTTTTCTGAAACAAGTTTTGCTAAAAAAATC 123
Query 107 CAATGATCTGAAGCTTCAGATCC-TCATCGGCTAAGAGCTAAGTCAC-ACC--TT----G 158
||| ||||||||||||||||||| || ||||||||| |||||||||| ||| || |
Sbjct 124 CAAAGATCTGAAGCTTCAGATCCTTC-TCGGCTAAG-GCTAAGTCACAACCTTTTGCAGG 181
Query 159 GTCTGAGAAAATGGTGGACGCTGTTGTAACAGTGTGTTTAGAGAAAGCCTTGAACATCCT 218
||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 182 GTCTGAGTAAATGGTGGACGCTGTTGTAACAGTGTTTTTAGAGAAAACCTTGAACATCCT 241
Query 219 CGAAGAAAAAGGCCGAACCGTATCGGACTACCGAAAACAGTTAGAAGATTTGCAAAGGGA 278
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 242 CGAAGAAAAAGGCCGAACCGTATCGGACTACCGAAAACAGTTGGAAGATTTGCAAAGCGA 301
Query 279 GTTGCAATATATGCAGTCTTTTCTCAAGGATGCAGAGAGGCAGAAGAGAACTAATGAAAT 338
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 ATTGAAATATATGCAGTCTTTTCTCAAGGATGCAGAGAGGCAGAAGAGAACTAATGAAAC 361
Query 339 GTTGCGTAATCTTG-TGACGGATTTACGAGAACTGGTTTATGAAGCTGAGGACATACTTG 397
|||||||| ||||| || |||||||||||||||||||||| ||||||||||| |||||||
Sbjct 362 GTTGCGTACTCTTGTTG-CGGATTTACGAGAACTGGTTTACGAAGCTGAGGATATACTTG 420
Query 398 TGGATTGTCAGCTCGCGGATGGTGATGCTGATGATGGTGGGAACGAGCAAAGGTCATCAA 457
||||||||||||||||||| || | |||||| |||||||||||||||||||||||
Sbjct 421 TGGATTGTCAGCTCGCGGA---TG--G-TGATGA---TGGGAACGAGCAAAGGTCATCAA 471
Query 458 ATGCGTGGCTTTCTCGGTTTAATCCTCCCCGGGTTTCATTGCAGTACAAGAAAAGCAAAC 517
||||||||||||| ||| || ||||| |||||||| | ||||||||||||||||||||||
Sbjct 472 ATGCGTGGCTTTCGCGGCTTCATCCTGCCCGGGTTCCGTTGCAGTACAAGAAAAGCAAAC 531
Query 518 GTTTGAAAGAGATCAATGAGAGGATATCGAAGATAAAGAGTCAAGTAGAGCCTTATTTCA 577
||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 532 GTTTGCAAGAGATCAATGAGAGGATAACGAAAATAAAGAGTCAAGTAGAGCCTTATTTCG 591
Query 578 AATTCAGAACGCCGAGTAATGTTGGAAGAGATAATGGAACTGATCGGTGGAGCTCTCCGG 637
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 AATTCATAACGCCGAGTAATGTTGGAAGAGATAATGGAACTGATCGGTGGAGCTCTCCGG 651
Query 638 TGTATAATCATACTCAGGTGGTTGGTTTGGAAGGAGATAAAAGAAAAATCAAGGAGTGGC 697
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 TGTATGATCATACTCAGGTGGTTGGTTTGGAAGGAGATAAAAGAAAAATCAAGGAGTGGC 711
Query 698 TCTTTCGATCAAACGAGAGCGAGCTATTGATCATGGCCTTTGTAGGGATGGGAGGACTAG 757
|||||||||||||||| ||| |||| ||||| ||||||||||| ||||||||||| ||||
Sbjct 712 TCTTTCGATCAAACGACAGCCAGCTTTTGATAATGGCCTTTGTTGGGATGGGAGGGCTAG 771
Query 758 GTAAAACTACGATTGCTCAAGAAGTGTTCAATGACAAAGAGATCGAACATCGTTTCGAAA 817
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 GTAAAACTACAATCGCTCAAGAAGTGTTCAATGACAAAGAGATCGAACATCGTTTCGAAA 831
Query 818 GAAGGATATGGGTGTCTGTGTCCCAGACTTTTACCGAAGAACAGATCATGAGAAGCATTT 877
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 832 GAAGGATATGGGTGTCTGTGTCCCAGACTTTTACTGAAGAACAGATCATGAGAAGCATAT 891
Query 878 TGCGGAACTTGGGGGACGCGAGCGTTGGAGATGATCTTGGAACATTGCTGAGAAAAATCC 937
|| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 892 TGAGGAACTTGGGGGACGCGAGTGTTGGAGATGATATTGGAACATTGCTGAGAAAAATCC 951
Query 938 AGCAGTATCTTTTGGGGAAAAGGTACTTGATTGTTATGGACGATGTGTGGGACAAGAATT 997
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 952 AGCAGTATCTTTTGGGGAAAAGGTACTTGATAGTTATGGACGATGTATGGGACAAGAATT 1011
Query 998 TGAGTTGGTGGGACAAGATCTACCAAGGACTGCCTAGAGGACAAGGTGGTAGCGTTATCG 1057
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1012 TGAGCTGGTGGGACAAGATCTACCAAGGACTGCCTAGAGGACAAGGAGGTAGCGTTATCG 1071
Query 1058 TGACCACAAGGTCGGAATCTGTCGCGGTAAGGGTGCAAGC--GAGA-GACAAGACTCACC 1114
|||||||||||||||||||||| ||| |||||||||||| |||| |||||||||||||
Sbjct 1072 TGACCACAAGGTCGGAATCTGTAGCGAAAAGGGTGCAAGCGAGAGACGACAAGACTCACC 1131
Query 1115 GACCACAGCTCCTCAGTTCTGATAACAGTTGGCTGCTGTTTTGTAAGGTGGCATTTGCAG 1174
| ||| ||||||| ||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1132 GTCCAGAGCTCCTTAGTCCTGATAACAGTTGGCTGCTGTTTTGTAATGTGGCATTTGCAG 1191
Query 1175 CAAATGACGGTACTTGTGAGCGTCCCGAGCTAGAGGATGTCGGCAAGGAGATTGTAACAA 1234
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1192 CAAATGACGGTACTTGTGAGCGTCCCGAGCTAGAGGATGTTGGCAAGGAGATTGTAACGA 1251
Query 1235 AATGCAAAGGTTTGCCTTTGACAATCAAAGCAGTTGGTGGATTACTTTTGTGCAAAGACC 1294
||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||
Sbjct 1252 AATGCAAAGGTTTGCCTTTGACAATCAAAGCGGTTGGTGGGTTACTTCTGTGCAAAGACC 1311
Query 1295 ATGTCTATCATGAATGGAGACGAATAGCAGATCATTTTCAGGATGAGCTAAGAGGAAACA 1354
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1312 ATGTCTATCATGAATGGAGACGAATTGCAGAGCATTTTCAGGATGAGCTAAGAGGAAACA 1371
Query 1355 CTTCTGAAACTGACAATGTGATGTCTTCTCTGCAATTGAGCTACGACGAACTCCCTCCCC 1414
||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||| |||
Sbjct 1372 CTTCTGAAACTGACAATGTTATGTCTTCTCTGCAGTTGAGCTACGATGAACTCCCTTCCC 1431
Query 1415 ACCTTAAGTCGTGCTTTCTCACGCTTTCTCTCTATCCAGAAGACTGTGTTATACCAAAAC 1474
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1432 ACCTTAAGTCGTGCATTCTCACGCTTTCGCTCTATCCAGAAGACTGTGTTATACCAAAAC 1491
Query 1475 AGCAACTCGTACATGGATGGATCGGAGAAGGTTTTGTCATATGGAGAAACGGAAGATCTG 1534
| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1492 AACAACTAGTACATGGATGGATCGGAGAAGGTTTTGTCATGTGGAGAAACGGAAGATCTG 1551
Query 1535 CAACTGAATCTGGAGAAGACTGCTTTTCCGGGCTCACAAACAGGTGTCTAATAGAAGTTG 1594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 CAACTGAATCTGGAGAAGACTGCTTTTCCGGGCTCACAAACAGGTGTCTAATAGAAGTTG 1611
Query 1595 TTGACAAAACCTATAGTGGAACCATCATCACTTGCAAGATTCATGACATGGTTCGTGATT 1654
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 TAGACAAAACCTATAGCGGAACCATCATCACTTGCAAGATTCATGACATGGTTCGTGATT 1671
Query 1655 TGGTGATTGATATAGCCAAGAAGGATTCGTTCTCTAACCCAGAAGGCCTCAACTGTCGTC 1714
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1672 TGGTGATCGATATAGCCAAGAAGGATTCGTTCTCTAACCCGGAAGGCCTCAACTGTCGTC 1731
Query 1715 ACCTTGGGATTAGTGGAAACTTTGATGAGAAGCAGATCAAAGTTAATCATAAGCTGAGAG 1774
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1732 ACCTTGGGATTAGTGGAAACTTTGATGAGAAGCAGATCAAAGTTAACCATAAGCTGAGAG 1791
Query 1775 GCGTTGTGTCAACAACTAAGACAGGTGAGGTGAACAAGCTCAACTCAGACTTAGCTAAGA 1834
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1792 GCGTAGTGTCAACAACTAAGACAGGTGAAGTGAACAAGCTCAACTCAGACTTAGCTAAGA 1851
Query 1835 AATTCACAGATTGCAAATATCTTCGGGTTCTCGATATCTC-AAAGTCAATATTTGATGCT 1893
|||||||||| ||||||||||||||||||||||||||||| ||| || ||||||||||||
Sbjct 1852 AATTCACAGACTGCAAATATCTTCGGGTTCTCGATATCTCGAAA-TCCATATTTGATGCT 1910
Query 1894 CCTCTGTCTGAGATTTTGGATGAGATTACAAGCCTTCAACACTTAGCATGTCTTAGTATG 1953
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1911 CCTCTGTCTGAGATTTTGGATGAGATTGCAAGCCTTCAACACTTAGCATGTCTTAGTTTG 1970
Query 1954 AGCAACACACATCCGCTGATCCAGTTTCCTCGTTCCATGGAAGATCTCCACAATCTTCAG 2013
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1971 AGCAACACACATCCGTTGATCCAGTTTCCTCGTTCCATGGAAGATCTCCACAACCTTCAG 2030
Query 2014 ATTCTAGACGCAAGCTACTGTCAGAATCTGAAACAACTTCAACCTTGCATTGTCTTGTTC 2073
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2031 ATTCTAGACGCAAGCTACTGTCAGAATCTGAAACAACTTCAACCTTGCATCGTCTTGTTC 2090
Query 2074 AAGAAACTCCTTGTACTTGACATGACGAATTGTGGATCACTTGAGTGCTTCCCCAAGGGT 2133
||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 2091 AAGAAACTCCTTGTACTTGACATGACGAACTGTGGATCCCTTGAATGCTTCCCCAAGGGT 2150
Query 2134 ATTGGAAGTCTCGTGAACCTCGAAGTGCTGTTGGGATTTAAGCCAGCCAGGTCCAACAAT 2193
|| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 2151 ATCGGAAGTCTCGTGAAGCTCGAAGTTCTGTTGGGATTTAAGCCAGCCAGGTCCAACAAT 2210
Query 2194 GGGTGCAAGCTCAGTGAAGTGAAAAATCTCACAAACCTCCGGAAACTTGGTCTTTCTCTG 2253
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2211 GGGTGCAAGCTCAGTGAAGTGAAAAATCTCACAAACCTTCGGAAACTTGGTCTTTCTCTG 2270
Query 2254 ACTCGTGGCGATCAGATCGAAGAGGATGAGCTTGATTCTTTGATAAACCTAAGCAAGCTT 2313
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 2271 ACTCGTGGCGATCAGATAGAAGAGGAGGAGCTTGATTCTTTGATAAACCTAAGCAAGCTG 2330
Query 2314 ATGTCCATTTCGATCAACTGCTACGATAGCTACGGCGATGATCTCATAACCAAAATTGAT 2373
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 2331 ATGTCCATTTCGATCAACTGCTATGATAGCTACGGCGATGATCTCATAACCAAAATAGAC 2390
Query 2374 GCGCTCACTCCTCCACACCAGCTCCATGAGCTTTCTCTACAATTCTATCCTGGAAAGTCG 2433
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2391 GCCCTTACTCCTCCACACCAGCTCCATGAGCTTTCTCTACAATTCTATCCTGGAAAGTCG 2450
Query 2434 AGTCCATCGTGGTTGAGTCCTCACAAGCTTCCGATGTTGAGGTACATGTCAATATGCTCA 2493
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2451 AGTCCATCGTGGTTGAGTCCTCACAAGCTTCCGATGTTGAGGTACATGTCAATATGTTCA 2510
Query 2494 GGTAATTTGGTGAAAATGCATGAACGATTCTGGGGAATTGAAAATACTCACTGGAGAATC 2553
|||||||||||||||||||| |||| ||||||||||| || |||||||||||||||||
Sbjct 2511 GGTAATTTGGTGAAAATGCAGGAACCATTCTGGGGAAACGAGAATACTCACTGGAGAATT 2570
Query 2554 GAAGGTTTAATGTTAAGTTCGTTGTCGGACCTAGACATGGACTGGGAAGCGCTGCAACAG 2613
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 2571 GAAGGTTTAATGTTAAGTTCATTGTCGGACCTAGACATGGACTGGGAAGTGCTGCAACAG 2630
Query 2614 TCAATGCCATACCTGAGGACTGTGACCGCAAACTGGTGTCCAGAGCTAGAGTCTTTCCCG 2673
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 2631 TCAATGCCGTACCTGAGGACCGTGACCGCAAACTGGTGTCCAGAGCTAGAGTCTTTCGCG 2690
Query 2674 ATCGAAGATGTCGGCTTTAGAGGCGGAGTGTGGACGAAAACACC-TCTGCACAGAACCTG 2732
|| |||||||| |||||||||||||||||||||| ||||||||| | |||||||||||||
Sbjct 2691 ATTGAAGATGTTGGCTTTAGAGGCGGAGTGTGGATGAAAACACCAT-TGCACAGAACCTG 2749
Query 2733 A 2733
|
Sbjct 2750 A 2750
> AT3G50960.1 | Symbols: PLP3a | phosducin-like protein 3 homolog
| chr3:18938697-18940428 REVERSE LENGTH=1020
Length=1020
Score = 180 bits (97), Expect = 8e-44
Identities = 102/104 (98%), Gaps = 1/104 (1%)
Strand=Plus/Minus
Query 2745 AAGCAACTAGATCAATGTTTATTAATCAGTGACAATAAGTTGGTGTATTACATATACCTT 2804
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1020 AAGCAACTAGATCAATGTTTATTAAACAGTGACAATAAGTTGGTGTATTACATATACCTT 961
Query 2805 GATACAATGTAATGTTGCATTTGACCGTTTGGATTTCATATCGC 2848
|||||||||||||||||| |||||||||||||||||||||||||
Sbjct 960 GATACAATGTAATGTTGC-TTTGACCGTTTGGATTTCATATCGC 918
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 141520946203
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5