BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485452
Length=1109
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51000.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1736 0.0
AT3G05600.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 62.1 1e-08
> AT3G51000.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr3:18945025-18946621 REVERSE LENGTH=1327
Length=1327
Score = 1736 bits (940), Expect = 0.0
Identities = 1057/1114 (95%), Gaps = 6/1114 (1%)
Strand=Plus/Plus
Query 1 CCGCCACGACACGTGTACATCCATTTCTCAACTCTTGTAATAAAGTCTTCAGCTTGGTCG 60
|||||||| || |||| ||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 20 CCGCCACGTCATGTGTGCATCCATTTCTCAACTCTTGTGATAAAGTCTTCACCTTGGTCG 79
Query 61 CTGATTTT--TCTTCTCTCTCACAACTATCAAGATCAAGAATCATGACGAGCTCTCTTAG 118
|||||||| || |||||||||||||||||| | |||||||||||||||||||| ||||
Sbjct 80 CTGATTTTCCTCCTCTCTCTCACAACTATCACCAACAAGAATCATGACGAGCTCTGTTAG 139
Query 119 AGAGAAGAAAG-TAAAGACCAACGGGATTTGGTTAAACGTTGCTGAGAAAGGAGACAAAG 177
||||||| ||| | |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 140 AGAGAAG-AAGATCAAGACCAACGGGATTTGGTTAAACGTTGCTGAGAAAGGAGACGAAG 198
Query 178 AAGGGCCTTTGGTTCTGTTACTTCATGGTTTCCCTGAGACATGGTACTCTTGGCGTCACC 237
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 199 AAGGGCCTTTGGTTCTGTTACTCCATGGTTTCCCTGAGACATGGTACTCTTGGCGTCACC 258
Query 238 AGATCGATTTCTTGTCTAGCCATGGTTACCACGTGGTCGCTCCAGATCTCAGAGGCTACG 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 AGATCGATTTCTTGTCTAGCCATGGTTACCACGTGGTCGCTCCAGATCTCAGAGGCTACG 318
Query 298 GTGACTCCGATACTCTTCCGAGCCATGAGTCTTACACTGTGAGCCACCTCGTTGCTGATG 357
||||||||||| |||| |||||||| ||||||||||||||||| ||||| || |||||||
Sbjct 319 GTGACTCCGATTCTCTACCGAGCCACGAGTCTTACACTGTGAGTCACCTAGTCGCTGATG 378
Query 358 TCATCGGTTTGCTCGACCACTACGGCACTGCTCAGGCTTTTGTGGCTGGGCATGACTGGG 417
|||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 379 TCATCGGTTTACTCGATCACTACGGCACTACTCAGGCTTTTGTGGCTGGGCATGACTGGG 438
Query 418 GAGCAATCATAGGTTGGTGTCTGTGCTTATTTAGACCAGACCGAGTCAAAGGTTACATAA 477
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||
Sbjct 439 GAGCAATCATAGGTTGGTGTCTATGCTTGTTTAGACCAGACCGAGTCAAAGGTTTCATAA 498
Query 478 GTCTCTCTGTTCCATATTTCCCAAGAGATCCAAAACTCAAACCTTCAGATTTTTTCAAGA 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 499 GTCTCTCTGTTCCATATTTCCCAAGAGATCCAAAACTCAAACCTTCAGATTTTTTCAAAA 558
Query 538 GTTTTGGAGATGGTTTATACATCTCTCAGTTTCAGAAACCCGGAAGAGCTGAGGCTGCAT 597
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 559 TTTTTGGAGATGGTTTATACATCACTCAGTTTCAGAAACCCGGAAGAGCTGAGGCTGCAT 618
Query 598 TTGCCAAGCATGATTGCTTAACGGTTATGAAGAAGTTCTTGCTGATAACAAGAACAGACT 657
|||||||||||||||| ||| |||| ||||||||||||||||| ||||||||||||||||
Sbjct 619 TTGCCAAGCATGATTGTTTATCGGTAATGAAGAAGTTCTTGCTAATAACAAGAACAGACT 678
Query 658 ACTTAGTGGCTCCTCCTGATACAGAGATCATCGATCATCTTGAGATACCATCGACGATTC 717
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 679 ACTTAGTGGCTCCTCCTGACACAGAGATCATAGATCATCTTGAGATACCGTCGACGATTC 738
Query 718 CAGATTGGATAACAGAAGAAGAGATTCAAGTGTATGCAGAAAAGTTTCAAAGATCTGGAT 777
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 739 CAGATTGGATAACAGAAGAAGAGATTCAAGTGTATGCGGAAAAGTTTCAAAGATCTGGAT 798
Query 778 TCACAGGCCCTTTGAATTACTACAGAGCCATGGATCTGAATTGGGAGATATTGGCGCCGT 837
|||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 799 TCACTGGCCCTTTGAATTACTACAGATCCATGGATATGAATTGGGAGATATTGGCGCCGT 858
Query 838 GGCAAGACTCCAAAATCGTCGTTCCTACTAAGTTTATAGCGGGAGACAAAGATATCGGAA 897
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 GGCAAGACTCCAAAATCGTCGTTCCTACTAAGTTTATAGCGGGAGACAAAGATATCGGAT 918
Query 898 ATGAAGGACCCAATGGAACAATGGAGTATGTAAAAGGAGAGATGTTCAAGAGTGTTGTAC 957
|||||||||| |||||||||||||||||||| ||||||||| ||||||||| |||||| |
Sbjct 919 ATGAAGGACCTAATGGAACAATGGAGTATGTGAAAGGAGAGGTGTTCAAGATTGTTGTGC 978
Query 958 CTAACCTTGAGATTGTTGTTATTGAAGATGGTCATCATTTTATCCAGCAGGAGAAGTCTG 1017
|||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 979 CTAATCTTGAGATAGTTGTTATTGAAGGTGGTCATCATTTTATCCAGCAGGAGAAGTCTG 1038
Query 1018 AACAAGTCTCTCAAGAGATTCTCTTTTTCTTAAACAAGTTAAGCAAAACAGAGTAAAATC 1077
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1039 AACAAGTCTCTCAAGAGATTCTCTCTTTCTTAAACAAGTTAAGCAAAACAGAGTAAAATC 1098
Query 1078 ATGCCGTTGT--GTGGCCTTATAGAAGAACCATG 1109
|| ||||| | ||||||||||||||||||||||
Sbjct 1099 ATACCGTTCTCTGTGGCCTTATAGAAGAACCATG 1132
> AT3G05600.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr3:1623244-1624763 REVERSE LENGTH=1296
Length=1296
Score = 62.1 bits (33), Expect = 1e-08
Identities = 35/36 (97%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 789 TTGAATTACTACAGAGCCATGGATCTGAATTGGGAG 824
||||| ||||||||||||||||||||||||||||||
Sbjct 762 TTGAACTACTACAGAGCCATGGATCTGAATTGGGAG 797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54367190235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5